UHGV-0071049 (vOTU-019793)

Viral Genome: UHGV-0071049

Genome Information

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Overview
UHGV ID	UHGV-0071049
vOTU ID	vOTU-019793
Representative Genome?	Yes
Source	GPD
Original Genome ID	uvig_137509
Associated Biosample	N/A
Viral Genome Confidence	Confident

Quality Assessment
CheckV Method	AAI-based
CheckV Completeness	89.24 (Medium-quality)
Trimmed?	No
CheckV Viral Markers	10
CheckV Host Markers	3
Recoded?	No

Viral Content
geNomad score	0.9753
Viral Hallmark Genes (geNomad)	9
Plasmid Hallmark Genes (geNomad)	0
ViralVerify Prediction	Virus
ViralVerify Score	25.72
Jumbo Phage?	No

Genome Content
Length (bps)	32,187
GC Content	46.89%
Genetic Code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS Genes	75
CDS Density	92%
Average CDS Length (bps)	394.84
Total tRNA Genes	0
Suppressor tRNA Genes	0

Genome Content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 89.24)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0071049_1	phrog_119	54.6	0.0000000000000017	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0071049_1	UniRef90_G9YSB5	103.0	2.11e-26	HNH domain-containing protein	N/A
eggNOG-mapper	UHGV-0071049_1	936140.AEOT01000014_gene1352	77.0	5.93e-17	HNH nucleases	N/A
COG	UHGV-0071049_1	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-0071049_2	phrog_36	66.0	8e-19	transcriptional regulator	transcription regulation
UniRef90	UHGV-0071049_2	UniRef90_E4L8B7	57.8	0.0000000558	Sigma70_r4 domain-containing protein	N/A
eggNOG-mapper	UHGV-0071049_2	1410624.JNKK01000017_gene1964	67.4	0.00000000000209	sigma factor activity	N/A
COG	UHGV-0071049_2	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
structural_annotation	UHGV-0071049_2	PF04545,MF_00674,NF009180,COG1342	N/A	N/A	N/A	N/A
KOfam	UHGV-0071049_4	K00571	114.1	1.7e-33	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-0071049_4	phrog_498	254.2	0	DNA methyltransferase	other
UniRef90	UHGV-0071049_4	UniRef90_A0A6L5TVY7	311.0	0	Methyltransferase	N/A
eggNOG-mapper	UHGV-0071049_4	742823.HMPREF9465_00225	290.0	0	PFAM DNA methylase N-4 N-6	N/A
PADLOC	UHGV-0071049_4	MTase_II_00015	259.7	0	Type II methyltransferase	RM
Pfam	UHGV-0071049_4	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-0071049_4	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-0071049_4	PF01555,MF_01872,NF010253,COG0863	N/A	N/A	N/A	N/A
KOfam	UHGV-0071049_5	K03497	53.7	0.000000000000005	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	N/A
PHROG	UHGV-0071049_5	phrog_498	201.6	0	DNA methyltransferase	other
UniRef90	UHGV-0071049_5	UniRef90_UPI001D02B0A1	183.0	0	site-specific DNA-methyltransferase	N/A
eggNOG-mapper	UHGV-0071049_5	1127695.HMPREF9163_00429	179.0	0	Belongs to the N(4) N(6)-methyltransferase family	N/A
PADLOC	UHGV-0071049_5	MTase_II_00015	142.9	3.89981e-42	Type II methyltransferase	RM
Pfam	UHGV-0071049_5	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
COG	UHGV-0071049_5	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-0071049_5	PF02195,MF_02015,TIGR04285,COG1475	N/A	N/A	N/A	N/A
PHROG	UHGV-0071049_13	phrog_924	45.1	0.0000000000023	N/A	unknown function
UniRef90	UHGV-0071049_13	UniRef90_UPI00195D1DCA	54.3	0.000000105	N/A	N/A
Pfam	UHGV-0071049_13	PF04448	N/A	N/A	N/A	DUF551
structural_annotation	UHGV-0071049_13	PF04448,NF041588	N/A	N/A	N/A	N/A
PHROG	UHGV-0071049_17	phrog_757	211.1	0	DNA methyltransferase	other
UniRef90	UHGV-0071049_17	UniRef90_A0A7J2REI9	226.0	0	DNA cytosine methyltransferase	N/A
eggNOG-mapper	UHGV-0071049_17	1291050.JAGE01000001_gene2906	269.0	0	DNA (cytosine-5-)-methyltransferase activity	N/A
COG	UHGV-0071049_17	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0071049_17	PF00145,MF_01872,TIGR00675,COG0270	N/A	N/A	N/A	N/A
KOfam	UHGV-0071049_21	K01160	52.8	0.000000000000012	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0071049_21	phrog_34	63.6	4.1e-18	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0071049_21	UniRef90_C7RH80	161.0	0	Endodeoxyribonuclease RusA	N/A
eggNOG-mapper	UHGV-0071049_21	525919.Apre_0813	161.0	0	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-0071049_21	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0071049_21	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0071049_21	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
KOfam	UHGV-0071049_22	K03111	152.9	2.8026e-45	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0071049_22	phrog_44	144.0	9.30462e-43	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0071049_22	UniRef90_A0A1W1VQW5	162.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0071049_22	635013.TherJR_2978	158.0	0	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-0071049_22	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0071049_22	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0071049_22	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0071049_22	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0071049_22	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0071049_24	phrog_16304	85.6	8.4e-25	N/A	unknown function
eggNOG-mapper	UHGV-0071049_24	33035.JPJF01000071_gene4467	65.1	0.00000000172	N/A	N/A
Pfam	UHGV-0071049_24	PF19808	N/A	N/A	N/A	DUF6291
Pfam	UHGV-0071049_24	PF07261	N/A	N/A	Replication initiation and membrane attachment	DnaB_2
NCBIFam	UHGV-0071049_24	TIGR01446.1	N/A	N/A	DnaD domain protein	N/A
structural_annotation	UHGV-0071049_24	PF19808,TIGR01446	N/A	N/A	N/A	N/A
PHROG	UHGV-0071049_25	phrog_5070	168.6	0	N/A	unknown function
UniRef90	UHGV-0071049_25	UniRef90_A0A3A9AGI5	120.0	9.04e-31	Polymer-forming cytoskeletal protein	N/A
eggNOG-mapper	UHGV-0071049_25	768710.DesyoDRAFT_1067	128.0	9.82e-35	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell	N/A
Pfam	UHGV-0071049_25	PF18836	N/A	N/A	YdcK Beta solenoid repeat	B_solenoid_ydck
COG	UHGV-0071049_25	COG1044	N/A	N/A	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	N/A
structural_annotation	UHGV-0071049_25	MF_01691,NF040481	N/A	N/A	N/A	N/A
KOfam	UHGV-0071049_31	K01449	78.2	1.5e-22	cwlJ, sleB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0071049_31	phrog_938	67.2	8e-20	endolysin	lysis
UniRef90	UHGV-0071049_31	UniRef90_R6DPB3	87.4	2.22e-18	Putative Cell wall hydrolase	N/A
eggNOG-mapper	UHGV-0071049_31	1274524.BSONL12_12176	69.3	0.00000000000395	COG3773 Cell wall hydrolyses involved in spore germination	N/A
Pfam	UHGV-0071049_31	PF07486	N/A	N/A	Cell Wall Hydrolase	Hydrolase_2
COG	UHGV-0071049_31	COG3773	N/A	N/A	Cell wall hydrolase CwlJ, involved in spore germination	N/A
structural_annotation	UHGV-0071049_31	PF07486,TIGR02869,COG3773	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0071049_34	PF08679,MF_01177,NF038268,COG1846	N/A	N/A	N/A	N/A
PHROG	UHGV-0071049_35	phrog_643	47.6	0.00000000000032	transcriptional regulator	transcription regulation
Pfam	UHGV-0071049_35	PF11195	N/A	N/A	N/A	DUF2829
structural_annotation	UHGV-0071049_35	PF11195	N/A	N/A	N/A	N/A
UniRef90	UHGV-0071049_39	UniRef90_A0A415TAI7	84.0	7.17e-20	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0071049_39	768486.EHR_02785	66.2	0.000000000000132	N/A	N/A
structural_annotation	UHGV-0071049_39	PF05339,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
KOfam	UHGV-0071049_40	K22300	60.7	3.4e-17	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0071049_40	phrog_3	50.7	0.000000000000075	transcriptional repressor	transcription regulation
UniRef90	UHGV-0071049_40	UniRef90_UPI0005E915F7	81.6	2.79e-17	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0071049_40	645991.Sgly_0310	75.9	0.00000000000000218	PFAM Peptidase S24 S26A S26B, conserved region	N/A
Pfam	UHGV-0071049_40	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0071049_40	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-0071049_40	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0071049_42	phrog_4980	123.2	0	superinfection exclusion	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0071049_42	UniRef90_A0A134AC14	127.0	1.98e-31	Copper amine oxidase domain protein	N/A
eggNOG-mapper	UHGV-0071049_42	642492.Clole_3420	123.0	3.2e-30	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides	N/A
Pfam	UHGV-0071049_42	PF07833	N/A	N/A	Copper amine oxidase N-terminal domain	Cu_amine_oxidN1
Pfam	UHGV-0071049_42	PF07553	N/A	N/A	Host cell surface-exposed lipoprotein	Lipoprotein_Ltp
COG	UHGV-0071049_42	COG0652	N/A	N/A	Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family	N/A
KOfam	UHGV-0071049_43	K14059	312.1	0	int; integrase	N/A
PHROG	UHGV-0071049_43	phrog_1	231.6	0	integrase	integration and excision
UniRef90	UHGV-0071049_43	UniRef90_Q3ABG2	270.0	0	Prophage LambdaCh01, site-specific recombinase, phage integrase family	N/A
eggNOG-mapper	UHGV-0071049_43	246194.CHY_1702	270.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0071049_43	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-0071049_43	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0071049_43	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0071049_43	PF00589,PF14659,PF14657,MF_01808,TIGR02224,COG4974	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0071049_46	PF18573,NF033147	N/A	N/A	N/A	N/A
KOfam	UHGV-0071049_48	K07726	52.2	0.000000000000013	K07726; putative transcriptional regulator	N/A
PHROG	UHGV-0071049_48	phrog_2104	46.5	0.0000000000005	N/A	unknown function
UniRef90	UHGV-0071049_48	UniRef90_A0A1Q9JGI6	110.0	5.24e-28	RHH_1 domain-containing protein	N/A
eggNOG-mapper	UHGV-0071049_48	1095750.HMPREF9970_2261	97.4	1.22e-23	N/A	N/A
Pfam	UHGV-0071049_48	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0071049_48	PF08965,PF19849,NF041951,COG2944	N/A	N/A	N/A	N/A
Pfam	UHGV-0071049_50	PF04545	N/A	N/A	Sigma-70, region 4	Sigma70_r4
KOfam	UHGV-0071049_51	K19304	115.4	6.8e-34	mepM; murein DD-endopeptidase [EC:3.4.24.-]	N/A
PHROG	UHGV-0071049_51	phrog_7767	95.9	2.7e-28	metallo-endopeptidase	other
UniRef90	UHGV-0071049_51	UniRef90_A0A2V2EQ01	229.0	0	Peptidase_M23 domain-containing protein	N/A
eggNOG-mapper	UHGV-0071049_51	33898.JRHJ01000001_gene581	95.9	3.29e-20	Peptidase family M23	N/A
Pfam	UHGV-0071049_51	PF01551	N/A	N/A	Peptidase family M23	Peptidase_M23
COG	UHGV-0071049_51	COG0739	N/A	N/A	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	N/A
structural_annotation	UHGV-0071049_51	PF01551,MF_00664,NF040883,COG0739	N/A	N/A	N/A	N/A
PHROG	UHGV-0071049_54	phrog_297	59.2	8.2e-17	holin	lysis
UniRef90	UHGV-0071049_54	UniRef90_N1ZDK1	117.0	9.03e-33	Phage phi LC3 family holin	N/A
eggNOG-mapper	UHGV-0071049_54	97138.C820_02010	119.0	5.29e-34	Bacteriophage holin	N/A
Pfam	UHGV-0071049_54	PF04531	N/A	N/A	Bacteriophage holin	Phage_holin_1
NCBIFam	UHGV-0071049_54	TIGR01598.1	N/A	N/A	phage holin	N/A
COG	UHGV-0071049_54	COG5546	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0071049_54	COG5546	N/A	N/A	N/A	N/A
PHROG	UHGV-0071049_55	phrog_1863	66.0	3.5e-19	N/A	unknown function
eggNOG-mapper	UHGV-0071049_55	748224.HMPREF9436_01412	91.3	2.83e-23	N/A	N/A
PHROG	UHGV-0071049_56	phrog_16701	55.1	0.000000000000001	peptidase	other
UniRef90	UHGV-0071049_56	UniRef90_A0A352NP54	115.0	1.48e-25	Pept_C1 domain-containing protein	N/A
eggNOG-mapper	UHGV-0071049_56	1449126.JQKL01000005_gene891	105.0	4.36e-24	Copper amine oxidase N-terminal domain	N/A
Pfam	UHGV-0071049_56	PF00112	N/A	N/A	Papain family cysteine protease	Peptidase_C1
Pfam	UHGV-0071049_56	PF07833	N/A	N/A	Copper amine oxidase N-terminal domain	Cu_amine_oxidN1
COG	UHGV-0071049_56	COG3292	N/A	N/A	Periplasmic ligand-binding sensor domain	N/A
structural_annotation	UHGV-0071049_56	PF00112,PF07833,COG4870	N/A	N/A	N/A	N/A
PHROG	UHGV-0071049_58	phrog_13589	205.5	0	N/A	unknown function
eggNOG-mapper	UHGV-0071049_58	411460.RUMTOR_01324	263.0	0	N/A	N/A
PHROG	UHGV-0071049_59	phrog_31538	56.8	5e-16	N/A	unknown function
eggNOG-mapper	UHGV-0071049_59	428125.CLOLEP_01433	58.5	0.000000000535	N/A	N/A
structural_annotation	UHGV-0071049_60	PF10651,NF038186	N/A	N/A	N/A	N/A
Pfam	UHGV-0071049_61	PF09693	N/A	N/A	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
structural_annotation	UHGV-0071049_61	PF09693,TIGR01669	N/A	N/A	N/A	N/A
PHROG	UHGV-0071049_63	phrog_863	48.0	0.00000000000016	tail fiber assembly	tail
eggNOG-mapper	UHGV-0071049_63	1232449.BAHV02000010_gene2732	59.7	0.0000000593	N/A	N/A
Pfam	UHGV-0071049_63	PF21722	N/A	N/A	Glycine-rich domain	Gly_rich_2
structural_annotation	UHGV-0071049_63	PF21722	N/A	N/A	N/A	N/A
PHROG	UHGV-0071049_65	phrog_18725	48.0	0.00000000000021	N/A	unknown function
eggNOG-mapper	UHGV-0071049_65	1226322.HMPREF1545_00062	77.0	7.13e-16	N/A	N/A
PHROG	UHGV-0071049_66	phrog_13879	218.2	0	N/A	unknown function
eggNOG-mapper	UHGV-0071049_66	645991.Sgly_0356	184.0	0	N/A	N/A
structural_annotation	UHGV-0071049_66	PF14594,PF03256,NF033848,COG4379,COG5156	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0071049_67	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0071049_68	phrog_23464	276.8	0	N/A	unknown function
eggNOG-mapper	UHGV-0071049_68	665950.HMPREF1025_02660	281.0	0	phage tail tape measure protein	N/A
COG	UHGV-0071049_68	COG5283	N/A	N/A	Phage-related tail protein	N/A
structural_annotation	UHGV-0071049_69	PF11836	N/A	N/A	N/A	N/A
PHROG	UHGV-0071049_70	phrog_88	106.9	1.7e-31	major tail protein	tail
UniRef90	UHGV-0071049_70	UniRef90_G9YSC5	218.0	0	Phage major tail protein, phi13 family	N/A
NCBIFam	UHGV-0071049_70	TIGR01603.1	N/A	N/A	major tail protein	N/A
COG	UHGV-0071049_70	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0071049_70	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0071049_71	908340.HMPREF9406_2573	82.8	6.25e-18	N/A	N/A
structural_annotation	UHGV-0071049_71	TIGR01725	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0071049_72	908340.HMPREF9406_2574	73.9	9.88e-16	N/A	N/A
structural_annotation	UHGV-0071049_72	PF05657,COG3167	N/A	N/A	N/A	N/A
PHROG	UHGV-0071049_73	phrog_19734	108.8	3.8e-32	N/A	unknown function
eggNOG-mapper	UHGV-0071049_73	349161.Dred_2602	80.5	7.35e-18	N/A	N/A
structural_annotation	UHGV-0071049_73	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0071049_74	phrog_749	69.9	3.3e-20	N/A	unknown function
UniRef90	UHGV-0071049_74	UniRef90_A0A7V7BBS9	73.6	0.00000000000000673	Phage gp6-like head-tail connector protein	N/A
eggNOG-mapper	UHGV-0071049_74	349161.Dred_2603	91.7	1.03e-22	N/A	N/A
Pfam	UHGV-0071049_75	PF12733	N/A	N/A	Cadherin-like beta sandwich domain	Cadherin-like
COG	UHGV-0071049_75	COG5184	N/A	N/A	Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins	N/A