UHGV-0071668 (vOTU-010301)

Viral Genome: UHGV-0071668

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0071668
vOTU ID	vOTU-010301
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_125266
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	97.12 (High-quality)
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.98
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	50.33
Jumbo phage	No

Genome content
Genome length (bp)	36,075
GC content	34.95%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	50
CDS density	91%
Average CDS length (bps)	655.02
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 97.12)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0071668_1	K01447	94.1	2.2e-27	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0071668_1	phrog_9611	109.1	5.1e-32	endolysin	lysis
UniRef90	UHGV-0071668_1	UniRef90_A0A352SK06	185.0	0	N-acetylmuramoyl-L-alanine amidase domain-containing protein	N/A
eggNOG-mapper	UHGV-0071668_1	1042156.CXIVA_01560	153.0	7.70714e-44	N-Acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-0071668_1	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
COG	UHGV-0071668_1	COG5632	N/A	N/A	N-acetylmuramoyl-L-alanine amidase CwlA	N/A
structural_annotation	UHGV-0071668_1	PF01510,MF_04111,NF008758,COG5632	N/A	N/A	N/A	N/A
PHROG	UHGV-0071668_2	phrog_199	68.3	1e-19	holin	lysis
UniRef90	UHGV-0071668_2	UniRef90_UPI000E4FBD87	269.0	0	phage holin family protein	N/A
eggNOG-mapper	UHGV-0071668_2	411462.DORLON_00766	184.0	0	Bacteriophage holin family	N/A
Pfam	UHGV-0071668_2	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-0071668_2	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-0071668_2	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-0071668_2	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
PHROG	UHGV-0071668_5	phrog_6616	446.3	0	tail protein	tail
UniRef90	UHGV-0071668_5	UniRef90_A0A0J1FXD9	346.0	0	Peptidase S74 domain-containing protein	N/A
eggNOG-mapper	UHGV-0071668_5	1121866.AUGK01000003_gene1439	206.0	0	Phage minor structural protein	N/A
COG	UHGV-0071668_5	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0071668_5	PF05113,NF033848,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-0071668_6	phrog_1194	84.0	1.6e-24	N/A	unknown function
eggNOG-mapper	UHGV-0071668_6	33035.JPJF01000093_gene2242	154.0	0	N/A	N/A
structural_annotation	UHGV-0071668_6	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0071668_7	phrog_1535	269.5	0	tail length tape measure protein	tail
UniRef90	UHGV-0071668_7	UniRef90_A0A1C5PIN9	759.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0071668_7	33035.JPJF01000093_gene2243	487.0	0	phage tail tape measure protein	N/A
COG	UHGV-0071668_7	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-0071668_7	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-0071668_8	phrog_8355	84.5	6.8e-25	N/A	unknown function
UniRef90	UHGV-0071668_8	UniRef90_UPI001F2CFAB2	79.0	1.95e-17	bacteriophage Gp15 family protein	N/A
eggNOG-mapper	UHGV-0071668_8	742740.HMPREF9474_03513	69.3	0.0000000000000224	N/A	N/A
PHROG	UHGV-0071668_9	phrog_8300	88.1	8.5e-26	N/A	unknown function
eggNOG-mapper	UHGV-0071668_9	1282664.H354_06701	90.9	1.4e-22	N/A	N/A
structural_annotation	UHGV-0071668_9	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0071668_10	phrog_820	114.0	9e-34	major tail protein	tail
eggNOG-mapper	UHGV-0071668_10	33035.JPJF01000093_gene2246	193.0	0	N/A	N/A
structural_annotation	UHGV-0071668_10	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0071668_11	phrog_2595	98.5	5.6e-29	head-tail connector protein	connector
UniRef90	UHGV-0071668_11	UniRef90_UPI001D0627B3	135.0	1.21e-38	minor capsid protein	N/A
eggNOG-mapper	UHGV-0071668_11	1282664.H354_06686	149.0	1.54143e-44	N/A	N/A
Pfam	UHGV-0071668_11	PF12691	N/A	N/A	Bacteriophage minor capsid protein	Minor_capsid_3
structural_annotation	UHGV-0071668_11	PF12691,COG5003	N/A	N/A	N/A	N/A
PHROG	UHGV-0071668_12	phrog_556	73.8	2.3e-21	minor head protein	head and packaging
eggNOG-mapper	UHGV-0071668_12	742740.HMPREF9474_03509	167.0	0	N/A	N/A
Pfam	UHGV-0071668_12	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
PHROG	UHGV-0071668_13	phrog_8710	135.2	2e-40	N/A	unknown function
eggNOG-mapper	UHGV-0071668_13	1304866.K413DRAFT_0782	137.0	1.35e-40	N/A	N/A
structural_annotation	UHGV-0071668_13	PF10665,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0071668_14	phrog_541	84.4	1.2e-24	head-tail adaptor	connector
eggNOG-mapper	UHGV-0071668_14	742740.HMPREF9474_03507	167.0	0	N/A	N/A
PHROG	UHGV-0071668_15	phrog_1378	70.4	2.4e-20	N/A	unknown function
eggNOG-mapper	UHGV-0071668_15	552396.HMPREF0863_01636	65.9	0.000000000000721	N/A	N/A
PHROG	UHGV-0071668_16	phrog_422	317.1	0	major head protein	head and packaging
UniRef90	UHGV-0071668_16	UniRef90_A0A413RCT9	547.0	0	Capsid protein	N/A
eggNOG-mapper	UHGV-0071668_16	552396.HMPREF0863_01635	396.0	0	N/A	N/A
structural_annotation	UHGV-0071668_16	PF19821,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0071668_17	phrog_2303	165.5	0	head scaffolding protein	head and packaging
eggNOG-mapper	UHGV-0071668_17	483218.BACPEC_01156	152.0	1.41531e-43	N/A	N/A
PHROG	UHGV-0071668_19	phrog_3675	115.5	2.1e-34	N/A	unknown function
UniRef90	UHGV-0071668_19	UniRef90_A0A3E2WML7	172.0	0	Dihydrolipoyl dehydrogenase	N/A
eggNOG-mapper	UHGV-0071668_19	585501.HMPREF6123_0838	130.0	3.49e-38	YjcQ protein	N/A
Pfam	UHGV-0071668_19	PF09639	N/A	N/A	YjcQ protein	YjcQ
structural_annotation	UHGV-0071668_19	PF09639,TIGR04176,COG2345	N/A	N/A	N/A	N/A
PHROG	UHGV-0071668_20	phrog_355	56.2	6.4e-16	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0071668_20	UniRef90_UPI000E473058	141.0	1.04999e-41	N/A	N/A
eggNOG-mapper	UHGV-0071668_20	397290.C810_05229	140.0	2.5896e-42	N/A	N/A
structural_annotation	UHGV-0071668_20	PF14359	N/A	N/A	N/A	N/A
PHROG	UHGV-0071668_21	phrog_581	228.8	0	minor head protein	head and packaging
UniRef90	UHGV-0071668_21	UniRef90_A0A1C5VPR8	855.0	0	ATPase involved in DNA repair	N/A
eggNOG-mapper	UHGV-0071668_21	33035.JPJF01000093_gene2255	394.0	0	N/A	N/A
Pfam	UHGV-0071668_21	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
Pfam	UHGV-0071668_21	PF18810	N/A	N/A	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease2	PBECR2
COG	UHGV-0071668_21	COG5585	N/A	N/A	Putative phage head morphogenesis protein, F of phage Mu or gp7 of SPP1	N/A
PHROG	UHGV-0071668_22	phrog_25639	84.3	9.1e-25	N/A	unknown function
eggNOG-mapper	UHGV-0071668_22	742740.HMPREF9474_03502	68.6	0.0000000000000188	N/A	N/A
PHROG	UHGV-0071668_23	phrog_533	285.3	0	portal protein	head and packaging
UniRef90	UHGV-0071668_23	UniRef90_A0A413RCQ7	894.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0071668_23	33035.JPJF01000093_gene2257	575.0	0	N/A	N/A
structural_annotation	UHGV-0071668_23	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-0071668_24	K06909	87.5	2.1e-25	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0071668_24	phrog_2	77.9	2.2e-22	terminase large subunit	head and packaging
UniRef90	UHGV-0071668_24	UniRef90_A0A413RCQ1	904.0	0	Terminase	N/A
eggNOG-mapper	UHGV-0071668_24	552396.HMPREF0863_01628	578.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-0071668_24	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-0071668_24	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0071668_24	PF03237,PF17289,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
KOfam	UHGV-0071668_25	K07474	92.6	9.1e-27	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-0071668_25	phrog_51	112.5	3.9e-33	terminase small subunit	head and packaging
UniRef90	UHGV-0071668_25	UniRef90_A0A413RCV1	322.0	0	Terminase small subunit	N/A
eggNOG-mapper	UHGV-0071668_25	1256908.HMPREF0373_00489	145.0	7.71975e-42	Terminase small subunit	N/A
Pfam	UHGV-0071668_25	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-0071668_25	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-0071668_25	PF03592,COG3728	N/A	N/A	N/A	N/A
PHROG	UHGV-0071668_26	phrog_36	40.7	0.000000000048	transcriptional regulator	transcription regulation
UniRef90	UHGV-0071668_26	UniRef90_UPI001C010EDC	198.0	0	sigma-70 family RNA polymerase sigma factor	N/A
PHROG	UHGV-0071668_29	phrog_20593	48.4	0.00000000000016	N/A	unknown function
eggNOG-mapper	UHGV-0071668_30	411461.DORFOR_01156	181.0	0	N/A	N/A
structural_annotation	UHGV-0071668_30	PF06319,NF033832,COG5321	N/A	N/A	N/A	N/A
PHROG	UHGV-0071668_31	phrog_15198	51.3	0.000000000000013	N/A	unknown function
UniRef90	UHGV-0071668_31	UniRef90_A0A416VUN0	138.0	1.12e-39	N/A	N/A
eggNOG-mapper	UHGV-0071668_31	742723.HMPREF9477_00919	52.8	0.00000242	N/A	N/A
Pfam	UHGV-0071668_31	PF04448	N/A	N/A	N/A	DUF551
PHROG	UHGV-0071668_32	phrog_5051	118.6	4.6e-35	N/A	unknown function
PHROG	UHGV-0071668_33	phrog_15198	44.3	0.0000000000016	N/A	unknown function
UniRef90	UHGV-0071668_33	UniRef90_A0A373VSI6	239.0	0	N/A	N/A
Pfam	UHGV-0071668_33	PF04448	N/A	N/A	N/A	DUF551
PHROG	UHGV-0071668_34	phrog_17690	123.9	6.9e-37	N/A	unknown function
UniRef90	UHGV-0071668_34	UniRef90_A0A6L5XWF4	116.0	3.54e-31	3-dehydroquinate synthase	N/A
eggNOG-mapper	UHGV-0071668_34	33035.JPJF01000123_gene2433	106.0	7.78e-28	N/A	N/A
KOfam	UHGV-0071668_36	K00558	55.6	6.3e-16	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-0071668_36	phrog_23072	184.7	0	DNA methyltransferase	other
UniRef90	UHGV-0071668_36	UniRef90_A0A3R6PIU8	340.0	0	DNA (cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-0071668_36	1235800.C819_02255	225.0	0	C-5 cytosine-specific DNA methylase	N/A
PADLOC	UHGV-0071668_36	DrmMII_00008	52.3	0.0000000000000032	DrmMII	DISARM
Pfam	UHGV-0071668_36	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
COG	UHGV-0071668_36	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
KOfam	UHGV-0071668_37	K00558	171.3	0	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-0071668_37	phrog_29443	225.6	0	N/A	unknown function
UniRef90	UHGV-0071668_37	UniRef90_A0A318EQP9	372.0	0	DNA (cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-0071668_37	1235800.C819_02255	413.0	0	C-5 cytosine-specific DNA methylase	N/A
PADLOC	UHGV-0071668_37	MTase_II_00020	117.2	3.1e-34	Type II methyltransferase	RM
Pfam	UHGV-0071668_37	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
COG	UHGV-0071668_37	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0071668_37	PF00145,MF_00786,TIGR00675,COG0270	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0071668_39	PF20531	N/A	N/A	N/A	N/A
PHROG	UHGV-0071668_40	phrog_2562	140.8	9.19952e-42	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0071668_40	UniRef90_R5ZK48	504.0	0	N/A	N/A
eggNOG-mapper	UHGV-0071668_40	97138.C820_00626	148.0	2.77e-40	N/A	N/A
Pfam	UHGV-0071668_40	PF14297	N/A	N/A	Lin1244/Lin1753-like, N-terminal	Lin1244_N
COG	UHGV-0071668_40	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0071668_40	PF14297	N/A	N/A	N/A	N/A
PHROG	UHGV-0071668_41	phrog_589	41.6	0.000000000018	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0071668_41	UniRef90_D4MWK8	110.0	2.14e-29	HNH endonuclease	N/A
Pfam	UHGV-0071668_41	PF01844	N/A	N/A	HNH endonuclease	HNH
PHROG	UHGV-0071668_42	phrog_244	82.2	8.4e-24	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0071668_42	1280692.AUJL01000044_gene2344	154.0	0	N/A	N/A
structural_annotation	UHGV-0071668_42	PF01870,MF_01490,NF040854,COG1591	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0071668_43	PF21715,COG1654	N/A	N/A	N/A	N/A
KOfam	UHGV-0071668_44	K07455	201.9	0	recT; recombination protein RecT	N/A
PHROG	UHGV-0071668_44	phrog_148	220.4	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0071668_44	UniRef90_UPI000BE24B78	407.0	0	recombinase RecT	N/A
eggNOG-mapper	UHGV-0071668_44	742765.HMPREF9457_02107	373.0	0	RecT family	N/A
Pfam	UHGV-0071668_44	PF03837	N/A	N/A	RecT family	RecT
NCBIFam	UHGV-0071668_44	TIGR00616.1	N/A	N/A	recombinase, phage RecT family	N/A
COG	UHGV-0071668_44	COG3723	N/A	N/A	Recombinational DNA repair protein RecT	N/A
structural_annotation	UHGV-0071668_44	PF03837,TIGR00616,COG3723	N/A	N/A	N/A	N/A
PHROG	UHGV-0071668_45	phrog_674	182.7	0	N/A	unknown function
UniRef90	UHGV-0071668_45	UniRef90_A0A413RZX0	260.0	0	N/A	N/A
eggNOG-mapper	UHGV-0071668_45	742740.HMPREF9474_03487	215.0	0	N/A	N/A
Pfam	UHGV-0071668_45	PF07083	N/A	N/A	N/A	DUF1351
structural_annotation	UHGV-0071668_45	PF07083	N/A	N/A	N/A	N/A
PHROG	UHGV-0071668_46	phrog_434	158.5	0	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0071668_46	UniRef90_UPI0019150417	277.0	0	YqaJ viral recombinase family protein	N/A
eggNOG-mapper	UHGV-0071668_46	1095750.HMPREF9970_1677	251.0	0	YqaJ viral recombinase family	N/A
Pfam	UHGV-0071668_46	PF09588	N/A	N/A	YqaJ-like viral recombinase domain	YqaJ
NCBIFam	UHGV-0071668_46	TIGR03033.1	N/A	N/A	putative phage-type endonuclease	N/A
COG	UHGV-0071668_46	COG5377	N/A	N/A	Phage-related protein, predicted endonuclease	N/A
structural_annotation	UHGV-0071668_46	PF09588,MF_03030,TIGR03033,COG5377	N/A	N/A	N/A	N/A
UniRef90	UHGV-0071668_48	UniRef90_UPI000E52936A	89.0	9.27e-22	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0071668_48	887929.HMP0721_1290	70.9	0.00000000000000206	Helix-turn-helix domain of resolvase	N/A
Pfam	UHGV-0071668_48	PF05339	N/A	N/A	N/A	DUF739
structural_annotation	UHGV-0071668_48	PF05339,NF041951,COG3655	N/A	N/A	N/A	N/A
KOfam	UHGV-0071668_49	K01356	167.0	0	lexA; repressor LexA [EC:3.4.21.88]	N/A
PHROG	UHGV-0071668_49	phrog_4	126.5	2.6e-37	transcriptional repressor	transcription regulation
UniRef90	UHGV-0071668_49	UniRef90_R5ZK71	274.0	0	Putative repressor LexA	N/A
eggNOG-mapper	UHGV-0071668_49	478749.BRYFOR_07570	247.0	0	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	N/A
Pfam	UHGV-0071668_49	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
Pfam	UHGV-0071668_49	PF00717	N/A	N/A	Peptidase S24-like	Peptidase_S24
COG	UHGV-0071668_49	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-0071668_49	PF01381,PF00717,MF_00015,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0071668_50	K06400	352.7	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0071668_50	phrog_95	350.7	0	integrase	integration and excision
UniRef90	UHGV-0071668_50	UniRef90_R5YR86	926.0	0	Site-specific recombinase	N/A
eggNOG-mapper	UHGV-0071668_50	411462.DORLON_00823	459.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-0071668_50	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0071668_50	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-0071668_50	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-0071668_50	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0071668_50	PF07508,PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A