UHGV-0071676 (vOTU-020003)

Viral Genome: UHGV-0071676

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0071676
vOTU ID	vOTU-020003
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_115009
Associated BioSample	SAMEA2579965
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	60.48 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9736
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	43.16
Jumbo phage	No

Genome content
Genome length (bp)	23,982
GC content	42.86%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	26
CDS density	94%
Average CDS length (bps)	867.69
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 60.48)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0071676_2	phrog_59	89.9	2.2e-26	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0071676_2	UniRef90_A0A829H6Y2	381.0	0	HNH endonuclease family protein	N/A
eggNOG-mapper	UHGV-0071676_2	212035.YL245_MIMIV	74.7	0.000000000000297	HNH endonuclease	N/A
PADLOC	UHGV-0071676_2	HEase_00016	79.6	4.2e-23	homing endonuclease	RM
Pfam	UHGV-0071676_2	PF13392	N/A	N/A	HNH endonuclease	HNH_3
eggNOG-mapper	UHGV-0071676_4	568703.LGG_01542	322.0	0	N/A	N/A
KOfam	UHGV-0071676_5	K03111	55.8	0.0000000000000013	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0071676_5	phrog_44	66.2	9e-19	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0071676_5	UniRef90_UPI00137739B8	228.0	0	single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0071676_5	1423732.BALS01000055_gene2723	207.0	0	Single-strand binding protein family	N/A
Pfam	UHGV-0071676_5	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0071676_5	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0071676_5	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0071676_5	PF00436,MF_00984,NF005580,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0071676_6	phrog_25061	124.4	1.5e-36	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0071676_6	UniRef90_A0A829H7N3	298.0	0	Phage-related HNH nuclease	N/A
eggNOG-mapper	UHGV-0071676_6	568703.LGG_01540	206.0	0	HNH nucleases	N/A
COG	UHGV-0071676_6	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-0071676_6	PF05766	N/A	N/A	N/A	N/A
PHROG	UHGV-0071676_10	phrog_1071	220.6	0	DNA methyltransferase	other
UniRef90	UHGV-0071676_10	UniRef90_A0A829H8G6	610.0	0	N/A	N/A
eggNOG-mapper	UHGV-0071676_10	386043.lwe1202	188.0	0	site-specific DNA-methyltransferase (adenine-specific) activity	N/A
COG	UHGV-0071676_10	COG0286	N/A	N/A	Type I restriction-modification system, DNA methylase subunit	N/A
PHROG	UHGV-0071676_11	phrog_83	101.8	7.1e-30	terminase small subunit	head and packaging
UniRef90	UHGV-0071676_11	UniRef90_A0A7S7JGC6	297.0	0	Phage terminase small subunit	N/A
eggNOG-mapper	UHGV-0071676_11	568703.LGG_01536	297.0	0	Phage terminase, small subunit	N/A
Pfam	UHGV-0071676_11	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
NCBIFam	UHGV-0071676_11	TIGR01558.1	N/A	N/A	phage terminase small subunit P27 family	N/A
COG	UHGV-0071676_11	COG3747	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-0071676_11	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-0071676_12	phrog_9	274.3	0	terminase large subunit	head and packaging
UniRef90	UHGV-0071676_12	UniRef90_A0A7S7JHB8	1256.0	0	Phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0071676_12	568703.LGG_01535	1241.0	0	Phage Terminase	N/A
Pfam	UHGV-0071676_12	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0071676_12	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0071676_12	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0071676_13	phrog_12	216.9	0	portal protein	head and packaging
UniRef90	UHGV-0071676_13	UniRef90_A0A5R8LK59	697.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0071676_13	568703.LGG_01534	700.0	0	Phage portal protein	N/A
Pfam	UHGV-0071676_13	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0071676_13	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0071676_13	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0071676_13	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-0071676_14	K06904	116.1	3.1e-36	N/A	N/A
PHROG	UHGV-0071676_14	phrog_2263	457.1	0	major head protein	head and packaging
UniRef90	UHGV-0071676_14	UniRef90_A0A0E2BQL6	954.0	0	N/A	N/A
eggNOG-mapper	UHGV-0071676_14	568703.LGG_01533	939.0	0	Phage capsid family	N/A
Pfam	UHGV-0071676_14	PF04586	N/A	N/A	Caudovirus prohead serine protease	Peptidase_S78
Pfam	UHGV-0071676_14	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0071676_14	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0071676_14	COG3740	N/A	N/A	Phage head maturation protease	N/A
structural_annotation	UHGV-0071676_14	PF04586,PF05065,MF_04119,TIGR01554,TIGR01543,COG3740,COG4653	N/A	N/A	N/A	N/A
UniRef90	UHGV-0071676_15	UniRef90_A0A7S7FP74	176.0	0	N/A	N/A
eggNOG-mapper	UHGV-0071676_15	1423732.BALS01000063_gene2223	139.0	3.44019e-42	N/A	N/A
structural_annotation	UHGV-0071676_15	TIGR01560	N/A	N/A	N/A	N/A
UniRef90	UHGV-0071676_16	UniRef90_A0A5R8LK65	214.0	0	Head-tail adaptor protein	N/A
eggNOG-mapper	UHGV-0071676_16	1423732.BALS01000063_gene2224	214.0	0	Phage head-tail joining protein	N/A
Pfam	UHGV-0071676_16	PF05521	N/A	N/A	Phage head-tail joining protein	Phage_H_T_join
NCBIFam	UHGV-0071676_16	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
structural_annotation	UHGV-0071676_16	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0071676_17	phrog_5	48.5	0.00000000000026	tail completion or Neck1 protein	connector
UniRef90	UHGV-0071676_17	UniRef90_UPI0011582C9F	259.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0071676_17	1423732.BALS01000063_gene2225	241.0	0	Bacteriophage HK97-gp10, putative tail-component	N/A
Pfam	UHGV-0071676_17	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
NCBIFam	UHGV-0071676_17	TIGR01725.1	N/A	N/A	HK97-gp10 family putative phage morphogenesis protein	N/A
structural_annotation	UHGV-0071676_17	PF05069,TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-0071676_18	phrog_1217	147.2	4.90454e-44	tail protein	tail
UniRef90	UHGV-0071676_18	UniRef90_UPI0011582DF8	242.0	0	N/A	N/A
eggNOG-mapper	UHGV-0071676_18	1423732.BALS01000063_gene2226	227.0	0	N/A	N/A
Pfam	UHGV-0071676_18	PF05657	N/A	N/A	N/A	DUF806
structural_annotation	UHGV-0071676_18	PF05657,COG5003	N/A	N/A	N/A	N/A
PHROG	UHGV-0071676_19	phrog_88	124.4	8.3e-37	major tail protein	tail
UniRef90	UHGV-0071676_19	UniRef90_A0A510WKC3	363.0	0	Small major structural protein	N/A
eggNOG-mapper	UHGV-0071676_19	1423732.BALS01000063_gene2227	372.0	0	Phage tail tube protein	N/A
Pfam	UHGV-0071676_19	PF04630	N/A	N/A	Phage tail tube protein	Phage_TTP_1
structural_annotation	UHGV-0071676_19	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-0071676_20	phrog_1346	106.4	2e-31	tail protein	tail
UniRef90	UHGV-0071676_20	UniRef90_A0A829H735	208.0	0	Putative phage tail protein	N/A
eggNOG-mapper	UHGV-0071676_20	1423732.BALS01000063_gene2228	100.0	8.28e-26	Phage tail assembly chaperone proteins, TAC	N/A
Pfam	UHGV-0071676_20	PF06896	N/A	N/A	Phage tail assembly chaperone proteins, TAC	Phage_TAC_3
structural_annotation	UHGV-0071676_20	PF06896	N/A	N/A	N/A	N/A
PHROG	UHGV-0071676_21	phrog_2629	102.5	1.3e-30	N/A	unknown function
UniRef90	UHGV-0071676_21	UniRef90_S2QS31	164.0	0	N/A	N/A
eggNOG-mapper	UHGV-0071676_21	1423732.BALS01000063_gene2229	92.8	6.5e-24	N/A	N/A
PHROG	UHGV-0071676_22	phrog_21157	278.6	0	minor tail protein	tail
eggNOG-mapper	UHGV-0071676_22	1423732.BALS01000132_gene398	100.0	3.1e-21	Phage tail tape measure protein TP901	N/A
COG	UHGV-0071676_22	COG5283	N/A	N/A	Phage-related tail protein	N/A
PHROG	UHGV-0071676_23	phrog_167	744.3	0	tail length tape measure protein	tail
UniRef90	UHGV-0071676_23	UniRef90_UPI000BC2D8F7	1951.0	0	tape measure protein	N/A
eggNOG-mapper	UHGV-0071676_23	1122147.AUEH01000011_gene2115	1007.0	0	Phage tail tape measure protein TP901	N/A
Pfam	UHGV-0071676_23	PF20155	N/A	N/A	Tape measure protein	TMP_3
NCBIFam	UHGV-0071676_23	TIGR02675.1	N/A	N/A	tape measure protein	N/A
COG	UHGV-0071676_23	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-0071676_23	PF20155,TIGR01760,NF012014,COG3941,COG3953	N/A	N/A	N/A	N/A
PHROG	UHGV-0071676_24	phrog_202	512.9	0	distal tail protein Dit	tail
UniRef90	UHGV-0071676_24	UniRef90_UPI00069D6CF8	1090.0	0	phage tail family protein	N/A
eggNOG-mapper	UHGV-0071676_24	39103.U5U775_9CAUD	755.0	0	Phage tail protein	N/A
Pfam	UHGV-0071676_24	PF05709	N/A	N/A	Phage tail protein RIFT-related domain	Sipho_tail
NCBIFam	UHGV-0071676_24	TIGR01633.1	N/A	N/A	distal tail protein Dit	N/A
structural_annotation	UHGV-0071676_24	PF05709,PF03388,TIGR01633,NF041449,NF033675,COG4722,COG3506	N/A	N/A	N/A	N/A
PHROG	UHGV-0071676_25	phrog_588	320.2	0	tail fiber protein and host specificity	tail
UniRef90	UHGV-0071676_25	UniRef90_UPI0003433B16	813.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-0071676_25	51369.Q9T0W6_9CAUD	362.0	0	peptidoglycan catabolic process	N/A
Pfam	UHGV-0071676_25	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0071676_25	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
structural_annotation	UHGV-0071676_25	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
KOfam	UHGV-0071676_26	K19721	43.8	0.0000000000007	COL5AS; collagen type V/XI/XXIV/XXVII, alpha	N/A
PHROG	UHGV-0071676_26	phrog_10693	128.0	0	host range and adsorption protein	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0071676_26	UniRef90_UPI000FF112BE	768.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-0071676_26	568703.LGG_01523	573.0	0	cellulase activity	N/A
Pfam	UHGV-0071676_26	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
Pfam	UHGV-0071676_26	PF21470	N/A	N/A	Minor structural protein 5-like, C-terminal domain	BppU-like_C
COG	UHGV-0071676_26	COG4733	N/A	N/A	Phage-related protein, tail protein J	N/A