UHGV-0073609 (vOTU-156853)

Viral Genome: UHGV-0073609

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0073609
vOTU ID	vOTU-156853
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_128326
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	83.63 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	22
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9807
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	39.57
Jumbo phage	No

Genome content
Genome length (bp)	28,900
GC content	45.65%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	41
CDS density	93%
Average CDS length (bps)	652.90
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 83.63)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
eggNOG-mapper	UHGV-0073609_1	1160721.RBI_II00526	86.7	2.46e-19	N/A	N/A
PHROG	UHGV-0073609_2	phrog_1194	47.4	0.00000000000031	N/A	unknown function
eggNOG-mapper	UHGV-0073609_2	1160721.RBI_II00527	101.0	5.84e-26	N/A	N/A
structural_annotation	UHGV-0073609_2	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0073609_3	phrog_6900	263.2	0	tail length tape measure protein	tail
eggNOG-mapper	UHGV-0073609_3	768726.HMPREF9178_1054	307.0	0	phage tail tape measure protein	N/A
COG	UHGV-0073609_3	COG1511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0073609_3	PF16535	N/A	N/A	N/A	N/A
PHROG	UHGV-0073609_4	phrog_1633	138.1	3.20001e-41	N/A	unknown function
UniRef90	UHGV-0073609_4	UniRef90_A0A139QHL2	124.0	3.32e-34	N/A	N/A
eggNOG-mapper	UHGV-0073609_4	873448.STRPO_0293	110.0	7.41e-30	N/A	N/A
Pfam	UHGV-0073609_4	PF17318	N/A	N/A	N/A	DUF5361
structural_annotation	UHGV-0073609_4	PF17318	N/A	N/A	N/A	N/A
PHROG	UHGV-0073609_5	phrog_1526	83.8	1.5e-24	N/A	unknown function
UniRef90	UHGV-0073609_5	UniRef90_A0A0E4H642	65.9	0.00000000000356	N/A	N/A
eggNOG-mapper	UHGV-0073609_5	665950.HMPREF1025_02524	80.5	1.06e-18	N/A	N/A
PHROG	UHGV-0073609_6	phrog_117	165.6	0	major tail protein	tail
UniRef90	UHGV-0073609_6	UniRef90_A0A373V4D0	364.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-0073609_6	1121864.OMO_02158	192.0	0	domain, Protein	N/A
COG	UHGV-0073609_6	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0073609_6	PF04630,TIGR01603,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0073609_7	phrog_123	62.8	6.2e-18	tail terminator	connector
UniRef90	UHGV-0073609_7	UniRef90_A0A2A5RIK6	121.0	1.36e-33	N/A	N/A
eggNOG-mapper	UHGV-0073609_7	1123263.AUKY01000068_gene495	127.0	1.69e-36	N/A	N/A
structural_annotation	UHGV-0073609_7	PF06141	N/A	N/A	N/A	N/A
PHROG	UHGV-0073609_8	phrog_387	59.5	5.5e-17	neck protein	connector
eggNOG-mapper	UHGV-0073609_8	1423775.BAMN01000011_gene600	61.6	0.0000000000138	N/A	N/A
PHROG	UHGV-0073609_9	phrog_501	70.2	2.9e-20	head closure Hc1	connector
UniRef90	UHGV-0073609_9	UniRef90_R6CEU4	149.0	2.10195e-44	N/A	N/A
eggNOG-mapper	UHGV-0073609_9	748224.HMPREF9436_00693	130.0	5.12e-38	N/A	N/A
structural_annotation	UHGV-0073609_9	PF12206,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0073609_10	phrog_137	53.3	0.000000000000004	head-tail adaptor Ad1	connector
UniRef90	UHGV-0073609_10	UniRef90_R6C7E8	160.0	0	Phage protein Gp19/Gp15/Gp42	N/A
eggNOG-mapper	UHGV-0073609_10	873448.STRPO_0287	87.8	3.25e-20	Phage protein Gp19/Gp15/Gp42	N/A
Pfam	UHGV-0073609_10	PF09355	N/A	N/A	N/A	Phage_Gp19
structural_annotation	UHGV-0073609_10	PF09355	N/A	N/A	N/A	N/A
PHROG	UHGV-0073609_11	phrog_32396	128.1	2.8e-38	N/A	unknown function
UniRef90	UHGV-0073609_11	UniRef90_A0A373V3S9	578.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0073609_11	936375.HMPREF1152_0679	325.0	0	Phage capsid family	N/A
Pfam	UHGV-0073609_11	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0073609_11	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
structural_annotation	UHGV-0073609_11	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0073609_12	phrog_233	65.3	1.8e-18	head scaffolding protein	head and packaging
UniRef90	UHGV-0073609_12	UniRef90_A0A7Z2B590	76.6	0.00000000000000573	N/A	N/A
eggNOG-mapper	UHGV-0073609_12	1280698.AUJS01000007_gene1037	66.6	0.00000000000728	N/A	N/A
Pfam	UHGV-0073609_12	PF14265	N/A	N/A	N/A	DUF4355
structural_annotation	UHGV-0073609_12	PF14265	N/A	N/A	N/A	N/A
PHROG	UHGV-0073609_13	phrog_17688	301.1	0	N/A	unknown function
UniRef90	UHGV-0073609_13	UniRef90_A0A373V412	847.0	0	Terminase	N/A
eggNOG-mapper	UHGV-0073609_13	665950.HMPREF1025_02532	513.0	0	phage terminase, large subunit	N/A
COG	UHGV-0073609_13	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0073609_13	PF20441,PF03354,MF_04146,NF033889,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0073609_14	phrog_872	96.7	2.6e-28	N/A	unknown function
UniRef90	UHGV-0073609_14	UniRef90_A0A373V416	165.0	0	N/A	N/A
eggNOG-mapper	UHGV-0073609_14	1280692.AUJL01000027_gene2162	129.0	5.15e-38	N/A	N/A
Pfam	UHGV-0073609_14	PF11195	N/A	N/A	N/A	DUF2829
dbAPIS	UHGV-0073609_14	APIS029	N/A	N/A	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	N/A
PHROG	UHGV-0073609_16	phrog_2494	164.8	0	minor head protein	head and packaging
UniRef90	UHGV-0073609_16	UniRef90_UPI000CF92673	117.0	4.75e-25	polymorphic toxin type 50 domain-containing protein	N/A
eggNOG-mapper	UHGV-0073609_16	1214184.ALKY01000039_gene923	132.0	6.1e-31	N/A	N/A
PHROG	UHGV-0073609_17	phrog_104	248.5	0	portal protein	head and packaging
UniRef90	UHGV-0073609_17	UniRef90_A0A373V3S0	796.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0073609_17	1280698.AUJS01000007_gene1033	491.0	0	Phage portal protein, SPP1 Gp6-like	N/A
structural_annotation	UHGV-0073609_17	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
PHROG	UHGV-0073609_18	phrog_36	47.5	0.000000000000082	transcriptional regulator	transcription regulation
UniRef90	UHGV-0073609_18	UniRef90_A0A374HLM1	242.0	0	Sigma-70 family RNA polymerase sigma factor	N/A
structural_annotation	UHGV-0073609_18	PF07374	N/A	N/A	N/A	N/A
UniRef90	UHGV-0073609_19	UniRef90_A0A373XZK2	726.0	0	N/A	N/A
eggNOG-mapper	UHGV-0073609_19	1160721.RBI_I01194	610.0	0	N/A	N/A
Pfam	UHGV-0073609_19	PF14199	N/A	N/A	N/A	DUF4317
structural_annotation	UHGV-0073609_19	PF14199,MF_00730,NF001557,COG3081	N/A	N/A	N/A	N/A
PHROG	UHGV-0073609_20	phrog_986	84.9	7.6e-25	RNA-binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0073609_20	UniRef90_A0A373V3T6	245.0	0	N/A	N/A
eggNOG-mapper	UHGV-0073609_20	2754.EH55_06950	71.2	0.0000000000000258	N/A	N/A
Pfam	UHGV-0073609_20	PF12961	N/A	N/A	N/A	DUF3850
structural_annotation	UHGV-0073609_20	PF12961,MF_00771,NF003443,COG4043	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0073609_21	PF08141,MF_00667,TIGR02861,COG0231	N/A	N/A	N/A	N/A
PHROG	UHGV-0073609_22	phrog_140	85.4	8.1e-25	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0073609_22	UniRef90_A0A373Y8T3	261.0	0	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0073609_22	411462.DORLON_00806	194.0	0	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-0073609_22	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0073609_22	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0073609_22	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
KOfam	UHGV-0073609_23	K07505	432.8	0	repA; regulatory protein RepA	N/A
PHROG	UHGV-0073609_23	phrog_2597	1195.4	0	DNA primase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0073609_23	UniRef90_A0A1C6E992	1508.0	0	Regulatory protein repA	N/A
eggNOG-mapper	UHGV-0073609_23	394503.Ccel_3304	1021.0	0	Primase C terminal 2 (PriCT-2)	N/A
Pfam	UHGV-0073609_23	PF08707	N/A	N/A	Primase C terminal 2 (PriCT-2)	PriCT_2
Pfam	UHGV-0073609_23	PF13481	N/A	N/A	AAA domain	AAA_25
COG	UHGV-0073609_23	COG3598	N/A	N/A	RecA-family ATPase	N/A
structural_annotation	UHGV-0073609_23	PF13481,PF16793,PF08220,MF_00350,MF_00700,NF006606,NF001641,COG3598,COG3285	N/A	N/A	N/A	N/A
KOfam	UHGV-0073609_24	K17677	347.6	0	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	N/A
PHROG	UHGV-0073609_24	phrog_16	283.5	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0073609_24	UniRef90_A0A1C6E943	1053.0	0	Type-1 restriction enzyme R protein	N/A
eggNOG-mapper	UHGV-0073609_24	1235792.C808_05388	819.0	0	helicase superfamily c-terminal domain	N/A
PADLOC	UHGV-0073609_24	mREase_IV_00005	120.1	2.4e-35	Type IV methyl-directed restriction enzyme	RM
Pfam	UHGV-0073609_24	PF04851	N/A	N/A	Type III restriction enzyme, res subunit	ResIII
Pfam	UHGV-0073609_24	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
COG	UHGV-0073609_24	COG1061	N/A	N/A	Superfamily II DNA or RNA helicase	N/A
structural_annotation	UHGV-0073609_24	PF04851,PF16203,MF_01489,NF008521,COG1061	N/A	N/A	N/A	N/A
PHROG	UHGV-0073609_25	phrog_2698	193.0	0	N/A	unknown function
UniRef90	UHGV-0073609_25	UniRef90_UPI001D0882DA	235.0	0	N/A	N/A
eggNOG-mapper	UHGV-0073609_25	742723.HMPREF9477_00927	164.0	0	N/A	N/A
structural_annotation	UHGV-0073609_25	PF17426,NF005674	N/A	N/A	N/A	N/A
PHROG	UHGV-0073609_26	phrog_124	239.5	0	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0073609_26	UniRef90_UPI000F52E538	471.0	0	ATP-binding protein	N/A
eggNOG-mapper	UHGV-0073609_26	1235792.C808_05390	422.0	0	AAA domain	N/A
Pfam	UHGV-0073609_26	PF13479	N/A	N/A	AAA domain	AAA_24
structural_annotation	UHGV-0073609_26	PF13479,MF_00268,TIGR01618,COG0468	N/A	N/A	N/A	N/A
KOfam	UHGV-0073609_27	K03546	61.7	9.9e-18	sbcC, rad50; DNA repair protein SbcC/Rad50	N/A
PHROG	UHGV-0073609_27	phrog_1499	474.7	0	N/A	unknown function
UniRef90	UHGV-0073609_27	UniRef90_A0A1C6E8X2	757.0	0	Chromosome segregation protein	N/A
eggNOG-mapper	UHGV-0073609_27	641112.ACOK01000073_gene2873	524.0	0	domain protein	N/A
Pfam	UHGV-0073609_27	PF13476	N/A	N/A	AAA domain	AAA_23
COG	UHGV-0073609_27	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-0073609_27	PF11398,MF_00365,TIGR00634,COG0497	N/A	N/A	N/A	N/A
PHROG	UHGV-0073609_35	phrog_14088	50.2	0.000000000000027	N/A	unknown function
UniRef90	UHGV-0073609_35	UniRef90_A0A374HW23	133.0	1.52e-39	Carboxypeptidase	N/A
eggNOG-mapper	UHGV-0073609_35	626523.GCWU000342_01045	64.3	0.000000000000406	N/A	N/A
UniRef90	UHGV-0073609_36	UniRef90_A0A373XXU1	131.0	1.43e-38	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0073609_36	428125.CLOLEP_02737	53.1	0.0000000328	N/A	N/A
KOfam	UHGV-0073609_37	K07727	40.7	0.000000000057	K07727; putative transcriptional regulator	N/A
PHROG	UHGV-0073609_37	phrog_8	64.5	2.4e-18	transcriptional regulator	transcription regulation
UniRef90	UHGV-0073609_37	UniRef90_A0A373XY93	243.0	0	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0073609_37	1160721.RBI_I01471	69.3	0.00000000000017	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-0073609_37	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-0073609_37	PF12844,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0073609_38	phrog_20936	42.4	0.000000000014	N/A	unknown function
UniRef90	UHGV-0073609_38	UniRef90_A0A374E958	139.0	7.48013e-42	ImmA/IrrE family metallo-endopeptidase	N/A
eggNOG-mapper	UHGV-0073609_38	861450.HMPREF0080_02020	51.2	0.000000145	N/A	N/A
Pfam	UHGV-0073609_38	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
structural_annotation	UHGV-0073609_38	PF06114	N/A	N/A	N/A	N/A
Pfam	UHGV-0073609_39	PF08797	N/A	N/A	HIRAN domain	HIRAN
UniRef90	UHGV-0073609_40	UniRef90_UPI001CD9144C	93.2	1.73e-18	TM2 domain-containing protein	N/A
eggNOG-mapper	UHGV-0073609_40	1348338.ADILRU_1828	95.1	7.11e-20	TM2 domain	N/A
COG	UHGV-0073609_40	COG2314	N/A	N/A	N/A	N/A
KOfam	UHGV-0073609_41	K14059	135.8	5.6e-40	int; integrase	N/A
PHROG	UHGV-0073609_41	phrog_1	170.3	0	integrase	integration and excision
UniRef90	UHGV-0073609_41	UniRef90_A0A373VP80	790.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-0073609_41	445972.ANACOL_01797	248.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0073609_41	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0073609_41	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0073609_41	PF00589,MF_01808,NF007246,COG4974	N/A	N/A	N/A	N/A