UHGV-0074298 (vOTU-022623)

Viral Genome: UHGV-0074298

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0074298
vOTU ID	vOTU-022623
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_130917
Associated BioSample	SAMEA2737743
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	53.74 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9812
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	41.23
Jumbo phage	No

Genome content
Genome length (bp)	36,565
GC content	32.48%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	46
CDS density	96%
Average CDS length (bps)	766.63
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 53.74)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0074298_1	K02340	92.2	7.6e-27	holA; DNA polymerase III subunit delta [EC:2.7.7.7]	N/A
PHROG	UHGV-0074298_1	phrog_20214	162.3	0	clamp loader of DNA polymerase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0074298_1	UniRef90_E7DN83	128.0	1.36e-31	HolA DNA polymerase III subunit delta	N/A
eggNOG-mapper	UHGV-0074298_1	59241.E7DN83_BPDP1	128.0	2.28e-32	N/A	N/A
Pfam	UHGV-0074298_1	PF21694	N/A	N/A	DNA polymerase III delta subunit, C-terminal domain	DNA_pol3_delta_C
structural_annotation	UHGV-0074298_1	PF21694,PF06144,MF_01509,NF005134,COG1466	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0074298_2	PF17399	N/A	N/A	N/A	N/A
KOfam	UHGV-0074298_4	K00571	233.3	0	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-0074298_4	phrog_67	186.2	0	DNA methyltransferase	other
UniRef90	UHGV-0074298_4	UniRef90_A0A0H3UZ66	296.0	0	Putative DNA-cytosine methyltransferase	N/A
eggNOG-mapper	UHGV-0074298_4	113355.CM001775_gene2058	200.0	0	Adenine specific DNA methylase Mod	N/A
PADLOC	UHGV-0074298_4	MTase_II_00157	163.7	0	Type II methyltransferase	RM
Pfam	UHGV-0074298_4	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-0074298_4	COG2189	N/A	N/A	Adenine specific DNA methylase Mod	N/A
structural_annotation	UHGV-0074298_4	PF01555,MF_01057,NF008572,COG0863	N/A	N/A	N/A	N/A
KOfam	UHGV-0074298_5	K03465	82.0	8.4e-24	thyX, thy1; thymidylate synthase (FAD) [EC:2.1.1.148]	N/A
PHROG	UHGV-0074298_5	phrog_85	58.9	1e-16	thymidylate synthase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0074298_5	UniRef90_UPI0018AA0C72	268.0	0	FAD-dependent thymidylate synthase	N/A
eggNOG-mapper	UHGV-0074298_5	1124982.MSI_00390	85.9	1.62e-17	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor, and NADPH and FADH(2) as the reductant	N/A
Pfam	UHGV-0074298_5	PF02511	N/A	N/A	Thymidylate synthase complementing protein	Thy1
COG	UHGV-0074298_5	COG1351	N/A	N/A	Thymidylate synthase ThyX, FAD-dependent family	N/A
structural_annotation	UHGV-0074298_5	PF02511,MF_01408,TIGR02170,COG1351	N/A	N/A	N/A	N/A
KOfam	UHGV-0074298_9	K00571	44.3	0.000000000003	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-0074298_9	phrog_11619	181.7	0	DNA methyltransferase	other
UniRef90	UHGV-0074298_9	UniRef90_A0A3R6I3Y1	292.0	0	Adenine-specific DNA methylase	N/A
eggNOG-mapper	UHGV-0074298_9	861450.HMPREF0080_01302	276.0	0	trisaccharide binding	N/A
COG	UHGV-0074298_9	COG0742	N/A	N/A	16S rRNA G966 N2-methylase RsmD	N/A
structural_annotation	UHGV-0074298_9	PF05148,MF_03044,NF033398,COG1041	N/A	N/A	N/A	N/A
PHROG	UHGV-0074298_10	phrog_111	153.5	1.4013e-45	DNA methyltransferase	other
UniRef90	UHGV-0074298_10	UniRef90_UPI0016B6DDE2	231.0	0	adenine methyltransferase	N/A
eggNOG-mapper	UHGV-0074298_10	760568.Desku_0784	185.0	0	DNA N-6-adenine-methyltransferase	N/A
PADLOC	UHGV-0074298_10	oMTase_00015	144.4	7.59504e-43	orphan methyltransferase	RM
Pfam	UHGV-0074298_10	PF05869	N/A	N/A	DNA N-6-adenine-methyltransferase (Dam)	Dam
structural_annotation	UHGV-0074298_10	PF05869,TIGR01712,COG0338	N/A	N/A	N/A	N/A
PHROG	UHGV-0074298_11	phrog_1485	73.8	3.2e-21	N/A	unknown function
UniRef90	UHGV-0074298_11	UniRef90_UPI001105E44C	99.4	2.43e-25	nucleotide modification associated domain-containing protein	N/A
eggNOG-mapper	UHGV-0074298_11	1347392.CCEZ01000060_gene3286	87.4	2.11e-21	N/A	N/A
Pfam	UHGV-0074298_11	PF07659	N/A	N/A	Nucleotide modification associated domain 1	DUF1599
PHROG	UHGV-0074298_19	phrog_9079	75.3	6.9e-22	N/A	unknown function
eggNOG-mapper	UHGV-0074298_19	1391646.AVSU01000053_gene947	77.4	4.3e-17	N/A	N/A
PHROG	UHGV-0074298_20	phrog_23746	44.5	0.0000000000027	N/A	unknown function
KOfam	UHGV-0074298_21	K06909	134.2	1.3e-39	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0074298_21	phrog_10250	158.6	0	N/A	unknown function
UniRef90	UHGV-0074298_21	UniRef90_UPI001E406D12	605.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0074298_21	59241.E7DNA1_BPDP1	473.0	0	Terminase-like family	N/A
Pfam	UHGV-0074298_21	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
NCBIFam	UHGV-0074298_21	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
structural_annotation	UHGV-0074298_21	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0074298_22	phrog_64	177.3	0	portal protein	head and packaging
UniRef90	UHGV-0074298_22	UniRef90_UPI001E369C6C	665.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0074298_22	59241.E7DNA2_BPDP1	364.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0074298_22	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0074298_22	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
PHROG	UHGV-0074298_24	phrog_1657	158.9	0	head morphogenesis	head and packaging
UniRef90	UHGV-0074298_24	UniRef90_UPI001E457CFA	282.0	0	phage head morphogenesis protein	N/A
eggNOG-mapper	UHGV-0074298_24	59241.E7DNA4_BPDP1	167.0	0	Phage Mu protein F like protein	N/A
structural_annotation	UHGV-0074298_24	PF06152,TIGR01641	N/A	N/A	N/A	N/A
PHROG	UHGV-0074298_26	phrog_1233	92.8	4.2e-27	N/A	unknown function
UniRef90	UHGV-0074298_26	UniRef90_T3DL44	79.3	8.82e-17	Phage domain protein	N/A
eggNOG-mapper	UHGV-0074298_26	1151292.QEW_0697	79.3	1.48e-17	N/A	N/A
structural_annotation	UHGV-0074298_26	PF13058	N/A	N/A	N/A	N/A
PHROG	UHGV-0074298_27	phrog_194	106.4	3e-31	head scaffolding protein	head and packaging
UniRef90	UHGV-0074298_27	UniRef90_UPI001E38E233	105.0	1.38e-24	phage scaffolding protein	N/A
eggNOG-mapper	UHGV-0074298_27	883156.HMPREF9282_00949	65.1	0.000000000398	Phage minor structural protein GP20	N/A
Pfam	UHGV-0074298_27	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-0074298_27	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-0074298_28	phrog_909	44.3	0.0000000000027	major head protein	head and packaging
structural_annotation	UHGV-0074298_28	PF02924	N/A	N/A	N/A	N/A
PHROG	UHGV-0074298_29	phrog_29	208.2	0	major head protein	head and packaging
UniRef90	UHGV-0074298_29	UniRef90_UPI001D166481	466.0	0	major capsid protein	N/A
eggNOG-mapper	UHGV-0074298_29	59241.E7DNA7_BPDP1	306.0	0	Phage major capsid protein E	N/A
Pfam	UHGV-0074298_29	PF03864	N/A	N/A	Phage major capsid protein E	Phage_cap_E
structural_annotation	UHGV-0074298_29	PF03864,MF_04133,NF041162,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0074298_30	phrog_4020	72.5	5e-21	N/A	unknown function
eggNOG-mapper	UHGV-0074298_30	1415774.U728_826	55.8	0.0000000096	N/A	N/A
structural_annotation	UHGV-0074298_31	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0074298_32	697281.Mahau_0578	57.4	0.00000000433	Phage virion morphogenesis	N/A
COG	UHGV-0074298_32	COG5005	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0074298_32	PF04883,TIGR01725	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0074298_33	PF05657	N/A	N/A	N/A	N/A
PHROG	UHGV-0074298_34	phrog_6686	183.0	0	tail tube protein	tail
UniRef90	UHGV-0074298_34	UniRef90_E7DNB3	183.0	0	Structural protein	N/A
eggNOG-mapper	UHGV-0074298_34	59241.E7DNB3_BPDP1	183.0	0	N/A	N/A
structural_annotation	UHGV-0074298_34	PF06488,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-0074298_35	phrog_6280	118.2	5e-35	N/A	unknown function
UniRef90	UHGV-0074298_35	UniRef90_W6NHB1	81.6	4.46e-17	Conserved protein	N/A
eggNOG-mapper	UHGV-0074298_35	1121342.AUCO01000012_gene1687	81.6	7.48e-18	N/A	N/A
PHROG	UHGV-0074298_36	phrog_6541	52.8	0.0000000000000045	N/A	unknown function
PHROG	UHGV-0074298_37	phrog_1533	407.8	0	tail length tape measure protein	tail
UniRef90	UHGV-0074298_37	UniRef90_UPI001E29D389	698.0	0	phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-0074298_37	1235794.C811_01380	330.0	0	Phage-related minor tail protein	N/A
Pfam	UHGV-0074298_37	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-0074298_37	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-0074298_37	COG5283	N/A	N/A	Phage-related tail protein	N/A
structural_annotation	UHGV-0074298_37	PF10145,TIGR01760,COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-0074298_38	phrog_202	92.0	5.60519e-44	distal tail protein Dit	tail
UniRef90	UHGV-0074298_38	UniRef90_A0A1I3MEI4	494.0	0	Putative phage tail component, N-terminal domain-containing protein	N/A
eggNOG-mapper	UHGV-0074298_38	1151292.QEW_2944	61.2	0.000000606	COG COG0791 Cell wall-associated hydrolases (invasion-associated proteins)	N/A
Pfam	UHGV-0074298_38	PF05709	N/A	N/A	Phage tail protein RIFT-related domain	Sipho_tail
Pfam	UHGV-0074298_38	PF08239	N/A	N/A	Bacterial SH3 domain	SH3_3
NCBIFam	UHGV-0074298_38	TIGR01633.1	N/A	N/A	distal tail protein Dit	N/A
COG	UHGV-0074298_38	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A
structural_annotation	UHGV-0074298_38	PF05709,PF18342,TIGR01633,NF040670,COG4722,COG4991	N/A	N/A	N/A	N/A
PHROG	UHGV-0074298_39	phrog_6253	85.3	3.8e-25	minor tail protein	tail
UniRef90	UHGV-0074298_39	UniRef90_UPI001D1653FC	1155.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-0074298_39	1329516.JPST01000005_gene1273	107.0	1.56e-20	Prophage endopeptidase tail	N/A
Pfam	UHGV-0074298_39	PF01464	N/A	N/A	Transglycosylase SLT domain	SLT
COG	UHGV-0074298_39	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0074298_39	PF14594,PF08239,PF05382,TIGR01665,NF041850,NF033742,COG4926,COG4991,COG0791	N/A	N/A	N/A	N/A
PHROG	UHGV-0074298_40	phrog_16267	188.1	0	N/A	unknown function
eggNOG-mapper	UHGV-0074298_40	411459.RUMOBE_00923	165.0	2.91001e-40	N/A	N/A
COG	UHGV-0074298_40	COG4926	N/A	N/A	Phage-related protein	N/A
KOfam	UHGV-0074298_41	K16559	56.4	2.5e-16	exoK; endo-1,3-1,4-beta-glycanase ExoK [EC:3.2.1.-]	N/A
eggNOG-mapper	UHGV-0074298_41	349741.Amuc_0875	100.0	2.82e-20	Glycosyl hydrolases family 16	N/A
Pfam	UHGV-0074298_41	PF00722	N/A	N/A	Glycosyl hydrolases family 16	Glyco_hydro_16
COG	UHGV-0074298_41	COG2273	N/A	N/A	Beta-glucanase, GH16 family	N/A
structural_annotation	UHGV-0074298_41	PF03935,PF19077,PF18998,PF15432,NF041449,NF033814,NF033675,COG2273,COG2372	N/A	N/A	N/A	N/A
PHROG	UHGV-0074298_42	phrog_25601	49.8	0.000000000000033	N/A	unknown function
eggNOG-mapper	UHGV-0074298_42	1329516.JPST01000017_gene416	78.6	0.00000000000363	N/A	N/A
COG	UHGV-0074298_42	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0074298_42	PF13157,PF13229,NF033679	N/A	N/A	N/A	N/A
UniRef90	UHGV-0074298_45	UniRef90_UPI000707449F	88.2	2.61e-21	phage holin	N/A
eggNOG-mapper	UHGV-0074298_45	97138.C820_02010	55.8	0.00000000311	Bacteriophage holin	N/A
Pfam	UHGV-0074298_45	PF04531	N/A	N/A	Bacteriophage holin	Phage_holin_1
COG	UHGV-0074298_45	COG5546	N/A	N/A	N/A	N/A