UHGV-0074878 (vOTU-141798)

Viral Genome: UHGV-0074878

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0074878
vOTU ID	vOTU-141798
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_131194
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	87.31 (Medium-quality)
Trimmed provirus	Yes
CheckV viral markers	12
CheckV host markers	3
Recoded stop codon	No

Viral Content
geNomad score	0.9748
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	33.03
Jumbo phage	No

Genome content
Genome length (bp)	30,415
GC content	56.48%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	48
CDS density	95%
Average CDS length (bps)	599.56
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 87.31)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
eggNOG-mapper	UHGV-0074878_1	97138.C820_02012	51.2	0.000000313	Ami_2	N/A
COG	UHGV-0074878_1	COG5632	N/A	N/A	N-acetylmuramoyl-L-alanine amidase CwlA	N/A
UniRef90	UHGV-0074878_2	UniRef90_UPI001BF10870	243.0	0	Tyrosine-protein phosphatase	N/A
eggNOG-mapper	UHGV-0074878_2	610130.Closa_0587	88.2	9.21e-17	Tyrosine phosphatase family	N/A
Pfam	UHGV-0074878_2	PF13350	N/A	N/A	Tyrosine phosphatase family	Y_phosphatase3
COG	UHGV-0074878_2	COG2365	N/A	N/A	Protein tyrosine/serine phosphatase Oca4	N/A
structural_annotation	UHGV-0074878_2	PF13350,PF18998,PF17425,COG2365	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0074878_3	PF20622,NF033814	N/A	N/A	N/A	N/A
PHROG	UHGV-0074878_4	phrog_6616	73.1	6.2e-22	tail protein	tail
structural_annotation	UHGV-0074878_4	PF13550,PF09931,NF033848,COG3500	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0074878_5	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0074878_6	phrog_1535	122.9	0	tail length tape measure protein	tail
UniRef90	UHGV-0074878_6	UniRef90_A0A810PX76	116.0	2.27e-23	Phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-0074878_6	1449050.JNLE01000003_gene3881	135.0	3.52e-30	domain protein	N/A
COG	UHGV-0074878_6	COG1511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0074878_6	PF16789,TIGR02473	N/A	N/A	N/A	N/A
PHROG	UHGV-0074878_7	phrog_706	107.1	1.7e-31	N/A	unknown function
UniRef90	UHGV-0074878_7	UniRef90_UPI00164D7633	173.0	0	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-0074878_7	693746.OBV_18170	169.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0074878_7	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0074878_7	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0074878_8	phrog_11299	100.1	2.2e-29	N/A	unknown function
eggNOG-mapper	UHGV-0074878_8	1449050.JNLE01000003_gene3883	64.3	0.0000000000551	N/A	N/A
structural_annotation	UHGV-0074878_8	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-0074878_9	phrog_3099	88.0	1.3e-25	N/A	unknown function
eggNOG-mapper	UHGV-0074878_9	693746.OBV_18150	224.0	0	N/A	N/A
structural_annotation	UHGV-0074878_9	PF10772,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0074878_10	phrog_3266	64.0	2.1e-18	tail completion	connector
eggNOG-mapper	UHGV-0074878_10	476272.RUMHYD_01781	114.0	3.5e-30	N/A	N/A
structural_annotation	UHGV-0074878_10	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-0074878_11	phrog_556	63.7	8.9e-19	minor head protein	head and packaging
UniRef90	UHGV-0074878_11	UniRef90_A0A1H7MNM8	111.0	2.11e-28	Minor capsid protein	N/A
eggNOG-mapper	UHGV-0074878_11	476272.RUMHYD_01780	114.0	2.41e-30	N/A	N/A
Pfam	UHGV-0074878_11	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-0074878_11	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-0074878_12	phrog_3366	44.3	0.0000000000032	N/A	unknown function
structural_annotation	UHGV-0074878_12	PF20536,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0074878_13	phrog_541	68.9	7e-20	head-tail adaptor	connector
eggNOG-mapper	UHGV-0074878_13	476272.RUMHYD_01778	71.6	0.00000000000012	N/A	N/A
PHROG	UHGV-0074878_14	phrog_267	51.6	0.000000000000013	major head protein	head and packaging
eggNOG-mapper	UHGV-0074878_14	1235799.C818_04223	158.0	6.02558e-44	N/A	N/A
structural_annotation	UHGV-0074878_14	PF11651,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0074878_15	phrog_194	44.2	0.0000000000036	head scaffolding protein	head and packaging
UniRef90	UHGV-0074878_15	UniRef90_UPI001C0EBA51	129.0	8.52e-34	phage scaffolding protein	N/A
eggNOG-mapper	UHGV-0074878_15	1125725.HMPREF1325_1331	62.0	0.00000000228	Phage minor structural protein GP20	N/A
Pfam	UHGV-0074878_15	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-0074878_15	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-0074878_16	phrog_15041	48.0	0.00000000000018	N/A	unknown function
PHROG	UHGV-0074878_17	phrog_581	248.0	0	minor head protein	head and packaging
UniRef90	UHGV-0074878_17	UniRef90_A0A355KVT5	347.0	0	Phage capsid protein (Fragment)	N/A
eggNOG-mapper	UHGV-0074878_17	476272.RUMHYD_01761	228.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-0074878_17	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0074878_17	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0074878_17	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-0074878_18	phrog_533	209.4	0	portal protein	head and packaging
UniRef90	UHGV-0074878_18	UniRef90_A0A173TY48	342.0	0	Phage portal protein, putative, A118 family	N/A
eggNOG-mapper	UHGV-0074878_18	33035.JPJF01000106_gene3135	325.0	0	phage minor capsid protein	N/A
structural_annotation	UHGV-0074878_18	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0074878_19	phrog_1233	95.3	7.3e-28	N/A	unknown function
eggNOG-mapper	UHGV-0074878_19	1415774.U728_832	92.8	5.28e-23	N/A	N/A
structural_annotation	UHGV-0074878_19	PF13058	N/A	N/A	N/A	N/A
KOfam	UHGV-0074878_20	K06909	396.0	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0074878_20	phrog_5653	147.7	5.74532e-44	terminase large subunit	head and packaging
UniRef90	UHGV-0074878_20	UniRef90_A0A416S378	635.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0074878_20	33035.JPJF01000106_gene3136	597.0	0	Terminase small subunit	N/A
Pfam	UHGV-0074878_20	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
Pfam	UHGV-0074878_20	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-0074878_20	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-0074878_20	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0074878_20	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0074878_20	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0074878_21	PF10922,MF_00839	N/A	N/A	N/A	N/A
PHROG	UHGV-0074878_22	phrog_36	63.0	6.3e-18	transcriptional regulator	transcription regulation
eggNOG-mapper	UHGV-0074878_22	428125.CLOLEP_01806	108.0	5.62e-28	N/A	N/A
Pfam	UHGV-0074878_22	PF07374	N/A	N/A	N/A	DUF1492
structural_annotation	UHGV-0074878_22	PF07374,TIGR01636	N/A	N/A	N/A	N/A
PHROG	UHGV-0074878_24	phrog_2245	100.8	1.3e-29	nucleoside triphosphate pyrophosphohydrolase	other
UniRef90	UHGV-0074878_24	UniRef90_A0A4U9RLZ8	83.2	6.13e-19	N/A	N/A
eggNOG-mapper	UHGV-0074878_24	293826.Amet_2596	92.4	1.48e-22	N/A	N/A
structural_annotation	UHGV-0074878_24	PF12643,MF_01020,TIGR03188	N/A	N/A	N/A	N/A
PHROG	UHGV-0074878_25	phrog_5781	66.9	2.7e-19	N/A	unknown function
UniRef90	UHGV-0074878_25	UniRef90_A0A810Q4L2	111.0	8.12e-29	N/A	N/A
eggNOG-mapper	UHGV-0074878_25	573061.Clocel_3558	75.1	0.00000000000000332	N/A	N/A
Pfam	UHGV-0074878_25	PF14359	N/A	N/A	N/A	DUF4406
COG	UHGV-0074878_25	COG3613	N/A	N/A	Nucleoside 2-deoxyribosyltransferase	N/A
structural_annotation	UHGV-0074878_25	PF14359,MF_03036,TIGR03646,COG3613	N/A	N/A	N/A	N/A
PHROG	UHGV-0074878_26	phrog_1029	224.6	0	N/A	unknown function
eggNOG-mapper	UHGV-0074878_26	1203606.HMPREF1526_01890	371.0	0	N/A	N/A
structural_annotation	UHGV-0074878_26	PF10065,COG5532	N/A	N/A	N/A	N/A
PHROG	UHGV-0074878_27	phrog_997	120.3	1.2e-35	replication terminator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0074878_27	UniRef90_R6MCS9	110.0	7.71e-29	N/A	N/A
eggNOG-mapper	UHGV-0074878_27	1519439.JPJG01000059_gene1910	177.0	0	N/A	N/A
KOfam	UHGV-0074878_28	K06223	226.3	0	dam; DNA adenine methylase [EC:2.1.1.72]	N/A
PHROG	UHGV-0074878_28	phrog_56	175.8	0	DNA methyltransferase	other
UniRef90	UHGV-0074878_28	UniRef90_R9MCP5	306.0	0	DNA adenine methylase	N/A
eggNOG-mapper	UHGV-0074878_28	1235799.C818_02654	306.0	0	D12 class N6 adenine-specific DNA methyltransferase	N/A
PADLOC	UHGV-0074878_28	MTase_II_00030	275.2	0	Type II methyltransferase	RM
Pfam	UHGV-0074878_28	PF02086	N/A	N/A	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
COG	UHGV-0074878_28	COG0338	N/A	N/A	DNA-adenine methylase	N/A
structural_annotation	UHGV-0074878_28	PF02086,MF_01872,NF008152,COG0338	N/A	N/A	N/A	N/A
KOfam	UHGV-0074878_29	K00558	222.8	0	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-0074878_29	phrog_116	258.8	0	DNA methyltransferase	other
UniRef90	UHGV-0074878_29	UniRef90_A0A350THX9	793.0	0	DNA (cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-0074878_29	1121334.KB911073_gene1852	648.0	0	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	N/A
PADLOC	UHGV-0074878_29	MTase_II_00020	95.9	1.3e-30	Type II methyltransferase	RM
Pfam	UHGV-0074878_29	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
COG	UHGV-0074878_29	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0074878_29	PF00145,MF_00351,TIGR00675,COG0270	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0074878_30	1232449.BAHV02000016_gene1829	135.0	4.85e-39	N/A	N/A
KOfam	UHGV-0074878_31	K03700	89.1	6.4e-26	recU; recombination protein U	N/A
PHROG	UHGV-0074878_31	phrog_843	137.1	6.40001e-41	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0074878_31	UniRef90_A0A1H0W5Y9	162.0	0	Holliday junction resolvase RecU	N/A
eggNOG-mapper	UHGV-0074878_31	1203606.HMPREF1526_01884	149.0	2.86005e-42	Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation	N/A
Pfam	UHGV-0074878_31	PF03838	N/A	N/A	Recombination protein U	RecU
COG	UHGV-0074878_31	COG3331	N/A	N/A	Penicillin-binding protein-related factor A, putative recombinase	N/A
structural_annotation	UHGV-0074878_31	PF03838,MF_00130,NF002581,COG3331	N/A	N/A	N/A	N/A
PHROG	UHGV-0074878_32	phrog_3584	131.8	5.4e-39	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0074878_32	411470.RUMGNA_02047	140.0	2.7e-37	N/A	N/A
structural_annotation	UHGV-0074878_32	PF21578	N/A	N/A	N/A	N/A
KOfam	UHGV-0074878_35	K06284	119.2	2.3e-35	abrB; AbrB family transcriptional regulator, transcriptional pleiotropic regulator of transition state genes	N/A
PHROG	UHGV-0074878_35	phrog_4681	100.8	5.1e-30	antitoxin from a toxin-antitoxin system	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0074878_35	UniRef90_A0A2N2DP50	112.0	1.49e-30	AbrB family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0074878_35	1120998.AUFC01000033_gene2303	107.0	2.39e-29	TIGRFAM looped-hinge helix DNA binding domain, AbrB family	N/A
Pfam	UHGV-0074878_35	PF04014	N/A	N/A	Antidote-toxin recognition MazE, bacterial antitoxin	MazE_antitoxin
NCBIFam	UHGV-0074878_35	TIGR01439.1	N/A	N/A	transcriptional regulator, AbrB family	N/A
COG	UHGV-0074878_35	COG2002	N/A	N/A	Bifunctional DNA-binding transcriptional regulator of stationary/sporulation/toxin gene expression and antitoxin component of the YhaV-PrlF toxin-antitoxin module	N/A
structural_annotation	UHGV-0074878_35	PF15937,TIGR01439,NF004424,COG2002	N/A	N/A	N/A	N/A
PHROG	UHGV-0074878_37	phrog_585	44.6	0.0000000000029	N/A	unknown function
Pfam	UHGV-0074878_37	PF10711	N/A	N/A	N/A	DUF2513
PHROG	UHGV-0074878_38	phrog_750	42.0	0.0000000000073	N/A	unknown function
structural_annotation	UHGV-0074878_38	PF13835,NF040858	N/A	N/A	N/A	N/A
KOfam	UHGV-0074878_44	K07729	51.6	0.000000000000022	K07729; putative transcriptional regulator	N/A
PHROG	UHGV-0074878_44	phrog_3	46.2	0.0000000000019	transcriptional repressor	transcription regulation
UniRef90	UHGV-0074878_44	UniRef90_A0A0H5SHR8	70.1	0.00000000000002	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0074878_44	1256908.HMPREF0373_00646	62.4	0.00000000000336	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0074878_44	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0074878_44	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0074878_44	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0074878_45	K22300	50.8	0.000000000000039	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0074878_45	phrog_2967	67.6	1.5e-19	transcriptional regulator	transcription regulation
UniRef90	UHGV-0074878_45	UniRef90_A0A354M9E0	75.5	0.0000000000000128	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0074878_45	1321784.HMPREF1987_01096	60.5	0.00000000281	Peptidase S24-like	N/A
Pfam	UHGV-0074878_45	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0074878_45	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
PHROG	UHGV-0074878_46	phrog_1914	99.9	6.3e-30	N/A	unknown function
UniRef90	UHGV-0074878_46	UniRef90_R6DVV5	236.0	0	Predicted Zn peptidase	N/A
eggNOG-mapper	UHGV-0074878_46	1160721.RBI_I01604	143.0	1.96e-40	N/A	N/A
Pfam	UHGV-0074878_46	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
COG	UHGV-0074878_46	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-0074878_46	PF06114,COG2856	N/A	N/A	N/A	N/A
PHROG	UHGV-0074878_47	phrog_14275	104.4	9.8e-31	N/A	unknown function
UniRef90	UHGV-0074878_47	UniRef90_A0A6H3LV81	108.0	8.54e-27	Zinc ribbon domain-containing protein	N/A
eggNOG-mapper	UHGV-0074878_47	1111121.HMPREF1247_0552	63.9	0.00000000013	N/A	N/A
NCBIFam	UHGV-0074878_47	NF038353.1	N/A	N/A	FxLYD domain-containing protein	N/A
structural_annotation	UHGV-0074878_47	PF07233,NF038353,COG5633	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0074878_48	PF21227	N/A	N/A	N/A	N/A