UHGV-0076418 (vOTU-022650)

Viral Genome: UHGV-0076418

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0076418
vOTU ID	vOTU-022650
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_120847
Associated BioSample	SAMEA2580163
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	57.37 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	2
Recoded stop codon	No

Viral Content
geNomad score	0.9524
Virus hallmark genes (geNomad)	15
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	24.53
Jumbo phage	No

Genome content
Genome length (bp)	27,458
GC content	35.09%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	41
CDS density	95%
Average CDS length (bps)	634.46
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 57.37)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0076418_4	K16628	62.4	2.2e-18	COL7A; collagen type VII alpha	N/A
PHROG	UHGV-0076418_4	phrog_819	89.0	4.5e-26	tail protein	tail
UniRef90	UHGV-0076418_4	UniRef90_UPI0006B50A68	189.0	0	collagen-like protein	N/A
eggNOG-mapper	UHGV-0076418_4	1196323.ALKF01000191_gene5623	103.0	1.25e-24	Collagen triple helix repeat (20 copies)	N/A
Pfam	UHGV-0076418_4	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
COG	UHGV-0076418_4	COG3266	N/A	N/A	Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain	N/A
PHROG	UHGV-0076418_5	phrog_7037	173.7	0	tail fiber protein	tail
UniRef90	UHGV-0076418_5	UniRef90_UPI00188B6258	160.0	4.2039e-45	phage tail protein	N/A
eggNOG-mapper	UHGV-0076418_5	1589751.A0A0C5AEQ0_9CAUD	159.0	1.23314e-43	N-acetylmuramoyl-L-alanine amidase activity	N/A
Pfam	UHGV-0076418_5	PF12571	N/A	N/A	Phage tail-collar fibre protein	DUF3751
PHROG	UHGV-0076418_6	phrog_14404	152.0	4.2039e-45	baseplate protein	tail
UniRef90	UHGV-0076418_6	UniRef90_A0A5B9Y8K3	233.0	0	Phage tail protein I	N/A
eggNOG-mapper	UHGV-0076418_6	1157490.EL26_01695	168.0	0	Tail protein	N/A
Pfam	UHGV-0076418_6	PF09684	N/A	N/A	Phage tail protein (Tail_P2_I)	Tail_P2_I
NCBIFam	UHGV-0076418_6	TIGR01634.1	N/A	N/A	phage tail protein I	N/A
COG	UHGV-0076418_6	COG4385	N/A	N/A	Bacteriophage P2-related tail formation protein	N/A
structural_annotation	UHGV-0076418_6	PF09684,TIGR01634,COG4385	N/A	N/A	N/A	N/A
PHROG	UHGV-0076418_7	phrog_6	252.9	0	baseplate protein	tail
UniRef90	UHGV-0076418_7	UniRef90_A0A5B9YAA6	461.0	0	Baseplate J/gp47 family protein	N/A
eggNOG-mapper	UHGV-0076418_7	857293.CAAU_0815	335.0	0	Baseplate J-like protein	N/A
Pfam	UHGV-0076418_7	PF04865	N/A	N/A	Baseplate J-like protein	Baseplate_J
COG	UHGV-0076418_7	COG3948	N/A	N/A	Phage-related baseplate assembly protein	N/A
structural_annotation	UHGV-0076418_7	PF04865,PF21379,MF_04102,TIGR02243,COG3948	N/A	N/A	N/A	N/A
KOfam	UHGV-0076418_8	K06903	53.4	0.0000000000000058	N/A	N/A
PHROG	UHGV-0076418_8	phrog_43	61.7	9.5e-18	baseplate wedge subunit	tail
UniRef90	UHGV-0076418_8	UniRef90_A0A5B9Y7T9	126.0	1.08e-35	GPW/gp25 family protein	N/A
eggNOG-mapper	UHGV-0076418_8	1232443.BAIA02000135_gene1413	82.8	2.94e-19	GPW Gp25 family protein	N/A
Pfam	UHGV-0076418_8	PF04965	N/A	N/A	Baseplate wedge protein gp25	GPW_gp25
COG	UHGV-0076418_8	COG3628	N/A	N/A	Phage baseplate assembly protein W	N/A
structural_annotation	UHGV-0076418_8	PF04965,TIGR03357,COG3628	N/A	N/A	N/A	N/A
KOfam	UHGV-0076418_9	K06906	44.9	0.000000000002	N/A	N/A
PHROG	UHGV-0076418_9	phrog_76	85.4	6.8e-25	tail protein	tail
UniRef90	UHGV-0076418_9	UniRef90_A0A5B9Y8H9	201.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-0076418_9	1501230.ET33_26375	147.0	3.50325e-44	Phage P2 GpU	N/A
Pfam	UHGV-0076418_9	PF06995	N/A	N/A	Phage P2 GpU	Phage_P2_GpU
COG	UHGV-0076418_9	COG3499	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0076418_9	PF06995,TIGR01633,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0076418_10	phrog_6142	56.1	5.9e-16	baseplate assembly protein	tail
UniRef90	UHGV-0076418_10	UniRef90_K4ZI36	53.5	0.000000329	Phage baseplate assembly protein V	N/A
eggNOG-mapper	UHGV-0076418_10	349161.Dred_1217	60.1	0.000000000273	Baseplate assembly protein	N/A
COG	UHGV-0076418_10	COG4540	N/A	N/A	Phage P2 baseplate assembly protein gpV	N/A
KOfam	UHGV-0076418_11	K06905	290.0	0	N/A	N/A
PHROG	UHGV-0076418_11	phrog_52	295.5	0	tail protein	tail
UniRef90	UHGV-0076418_11	UniRef90_UPI000490D98C	305.0	0	phage late control protein	N/A
eggNOG-mapper	UHGV-0076418_11	1449063.JMLS01000030_gene462	305.0	0	COG3500 Phage protein D	N/A
Pfam	UHGV-0076418_11	PF05954	N/A	N/A	Phage tail baseplate hub (GPD)	Phage_GPD
COG	UHGV-0076418_11	COG3500	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0076418_11	PF14594,NF033848,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-0076418_12	phrog_46	55.6	7.8e-16	tail protein	tail
UniRef90	UHGV-0076418_12	UniRef90_A0A0U9HMM4	89.0	6.37e-22	p2-like prophage tail protein X	N/A
eggNOG-mapper	UHGV-0076418_12	1157490.EL26_01725	81.3	1.26e-19	Phage Tail Protein X	N/A
Pfam	UHGV-0076418_12	PF05489	N/A	N/A	Phage Tail Protein X	Phage_tail_X
COG	UHGV-0076418_12	COG5004	N/A	N/A	P2-like prophage tail protein X	N/A
structural_annotation	UHGV-0076418_12	PF05489,TIGR02899,COG5004	N/A	N/A	N/A	N/A
PHROG	UHGV-0076418_13	phrog_973	94.7	1.5e-27	tail length tape measure protein	tail
UniRef90	UHGV-0076418_13	UniRef90_UPI00096FCEA0	248.0	0	tape measure protein	N/A
eggNOG-mapper	UHGV-0076418_13	632245.CLP_2908	236.0	0	phage tail tape measure protein	N/A
Pfam	UHGV-0076418_13	PF05017	N/A	N/A	TMP repeat	TMP
COG	UHGV-0076418_13	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-0076418_13	PF10145,TIGR01760,COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-0076418_15	phrog_3140	85.0	1.1e-24	tail assembly chaperone	tail
UniRef90	UHGV-0076418_15	UniRef90_A0A5B9Y7N1	100.0	1.38e-25	Phage tail assembly protein	N/A
eggNOG-mapper	UHGV-0076418_15	349161.Dred_1214	95.1	3.34e-24	N/A	N/A
Pfam	UHGV-0076418_15	PF10109	N/A	N/A	Phage tail assembly chaperone proteins, E, or 41 or 14	Phage_TAC_7
structural_annotation	UHGV-0076418_15	PF10109	N/A	N/A	N/A	N/A
KOfam	UHGV-0076418_16	K06908	113.0	3.6e-33	N/A	N/A
PHROG	UHGV-0076418_16	phrog_55	138.8	2.50006e-41	head closure	connector
UniRef90	UHGV-0076418_16	UniRef90_A0A5B9Y8G1	295.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-0076418_16	1449063.JMLS01000030_gene458	190.0	0	Phage tail tube protein FII	N/A
Pfam	UHGV-0076418_16	PF04985	N/A	N/A	Phage tail tube protein FII	Phage_tube
COG	UHGV-0076418_16	COG3498	N/A	N/A	Phage tail tube protein FII	N/A
structural_annotation	UHGV-0076418_16	PF04985,TIGR01611,COG3498	N/A	N/A	N/A	N/A
KOfam	UHGV-0076418_17	K06907	151.7	5.60519e-45	N/A	N/A
PHROG	UHGV-0076418_17	phrog_23	261.6	0	tail sheath	tail
UniRef90	UHGV-0076418_17	UniRef90_A0A5B9Y8L6	682.0	0	Phage tail sheath family protein	N/A
eggNOG-mapper	UHGV-0076418_17	857293.CAAU_0806	567.0	0	COG3497 Phage tail sheath protein FI	N/A
COG	UHGV-0076418_17	COG3497	N/A	N/A	Phage tail sheath protein FI	N/A
structural_annotation	UHGV-0076418_17	PF10758,TIGR03355,COG3497	N/A	N/A	N/A	N/A
PHROG	UHGV-0076418_18	phrog_4089	52.4	0.0000000000000078	N/A	unknown function
eggNOG-mapper	UHGV-0076418_18	572547.Amico_1115	58.2	0.00000000065	N/A	N/A
PHROG	UHGV-0076418_19	phrog_2581	100.6	1.3e-29	virion structural protein	head and packaging
eggNOG-mapper	UHGV-0076418_19	349161.Dred_1210	92.8	7.6e-22	N/A	N/A
structural_annotation	UHGV-0076418_19	PF09646,COG5003	N/A	N/A	N/A	N/A
PHROG	UHGV-0076418_20	phrog_2551	72.2	7.8e-21	minor tail protein	tail
eggNOG-mapper	UHGV-0076418_20	665959.HMPREF1013_00840	61.6	0.0000000000632	N/A	N/A
structural_annotation	UHGV-0076418_20	PF13856	N/A	N/A	N/A	N/A
Pfam	UHGV-0076418_21	PF07498	N/A	N/A	Rho termination factor, N-terminal domain	Rho_N
PHROG	UHGV-0076418_22	phrog_29	215.2	0	major head protein	head and packaging
UniRef90	UHGV-0076418_22	UniRef90_A0A5B9YAR9	417.0	0	Major capsid protein	N/A
eggNOG-mapper	UHGV-0076418_22	1235793.C809_02663	340.0	0	Phage major capsid protein E	N/A
Pfam	UHGV-0076418_22	PF03864	N/A	N/A	Phage major capsid protein E	Phage_cap_E
structural_annotation	UHGV-0076418_22	PF03864,MF_04133,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0076418_23	phrog_49	44.4	0.0000000000027	head decoration	head and packaging
UniRef90	UHGV-0076418_23	UniRef90_A0A3A9D1N6	65.5	0.0000000000428	Head decoration protein	N/A
eggNOG-mapper	UHGV-0076418_23	936573.HMPREF1147_1719	73.6	0.00000000000000305	Bacteriophage lambda head decoration protein D	N/A
Pfam	UHGV-0076418_23	PF02924	N/A	N/A	Bacteriophage lambda head decoration protein D	HDPD
structural_annotation	UHGV-0076418_23	PF02924,COG5471	N/A	N/A	N/A	N/A
KOfam	UHGV-0076418_24	K01358	137.2	1.6e-40	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0076418_24	phrog_94	208.0	0	head maturation protease	head and packaging
UniRef90	UHGV-0076418_24	UniRef90_A0A7T5ENA5	294.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-0076418_24	857293.CAAU_0798	254.0	0	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-0076418_24	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0076418_24	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-0076418_24	PF00574,MF_00444,NF011090,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-0076418_25	phrog_21	372.9	0	portal protein	head and packaging
UniRef90	UHGV-0076418_25	UniRef90_A0A5B9Y8G9	717.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0076418_25	857293.CAAU_0797	637.0	0	Phage portal protein, lambda family	N/A
Pfam	UHGV-0076418_25	PF05136	N/A	N/A	Phage portal protein, lambda family	Phage_portal_2
NCBIFam	UHGV-0076418_25	TIGR01539.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0076418_25	COG5511	N/A	N/A	Phage capsid protein	N/A
structural_annotation	UHGV-0076418_25	PF05136,MF_04135,TIGR01539,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0076418_26	phrog_118	61.1	1.6e-17	head-tail adaptor	connector
eggNOG-mapper	UHGV-0076418_26	1235793.C809_02659	59.3	0.0000000000802	N/A	N/A
Pfam	UHGV-0076418_26	PF19645	N/A	N/A	N/A	DUF6148
structural_annotation	UHGV-0076418_26	PF19645	N/A	N/A	N/A	N/A
KOfam	UHGV-0076418_27	K21512	486.9	0	gpA; terminase, large subunit [EC:3.1.21.4]	N/A
PHROG	UHGV-0076418_27	phrog_15	619.2	0	terminase large subunit	head and packaging
UniRef90	UHGV-0076418_27	UniRef90_A0A367FXR4	832.0	0	Terminase	N/A
eggNOG-mapper	UHGV-0076418_27	1235793.C809_02658	800.0	0	Phage terminase large subunit (GpA)	N/A
Pfam	UHGV-0076418_27	PF05876	N/A	N/A	Phage terminase large subunit gpA, ATPase domain	GpA_ATPase
Pfam	UHGV-0076418_27	PF20454	N/A	N/A	Terminase large subunit gpA, endonuclease domain	GpA_nuclease
COG	UHGV-0076418_27	COG5525	N/A	N/A	Phage terminase, large subunit GpA	N/A
HAMAP	UHGV-0076418_27	MF_04144	N/A	N/A	Terminase, large subunit	N/A
structural_annotation	UHGV-0076418_27	PF05876,PF20454,MF_04144,TIGR01547,COG5525	N/A	N/A	N/A	N/A
KOfam	UHGV-0076418_28	K22014	66.6	5e-19	Nu1, Noh; terminase small subunit / prophage DNA-packing protein	N/A
PHROG	UHGV-0076418_28	phrog_57	115.1	7.5e-34	terminase small subunit	head and packaging
UniRef90	UHGV-0076418_28	UniRef90_A0A1M7YBS6	181.0	0	Phage DNA packaging protein, Nu1 subunit of terminase	N/A
eggNOG-mapper	UHGV-0076418_28	1235793.C809_02657	176.0	0	N/A	N/A
COG	UHGV-0076418_28	COG4220	N/A	N/A	Phage DNA packaging protein, Nu1 subunit of terminase	N/A
structural_annotation	UHGV-0076418_28	PF07471,NF040990,COG4220	N/A	N/A	N/A	N/A
PHROG	UHGV-0076418_29	phrog_27	93.1	4.4e-27	tail completion or Neck1 protein	connector
UniRef90	UHGV-0076418_29	UniRef90_UPI001BE5FD78	76.3	0.0000000000000648	phage tail protein	N/A
eggNOG-mapper	UHGV-0076418_29	1211817.CCAT010000013_gene3180	85.9	2.53e-18	Prophage minor tail protein Z (GPZ)	N/A
structural_annotation	UHGV-0076418_29	PF06763	N/A	N/A	N/A	N/A
KOfam	UHGV-0076418_30	K04763	76.6	4.1e-22	xerD; integrase/recombinase XerD	N/A
PHROG	UHGV-0076418_30	phrog_216	98.5	6.6e-29	integrase	integration and excision
UniRef90	UHGV-0076418_30	UniRef90_A0A5B9Y8J2	235.0	0	Tyrosine-type recombinase/integrase	N/A
eggNOG-mapper	UHGV-0076418_30	1450694.BTS2_3336	65.1	0.000000000242	Integrase	N/A
Pfam	UHGV-0076418_30	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0076418_30	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0076418_30	PF00589,MF_02055,NF040815,COG4973	N/A	N/A	N/A	N/A
KOfam	UHGV-0076418_31	K06223	242.0	0	dam; DNA adenine methylase [EC:2.1.1.72]	N/A
PHROG	UHGV-0076418_31	phrog_56	210.3	0	DNA methyltransferase	other
UniRef90	UHGV-0076418_31	UniRef90_UPI0006B62702	501.0	0	DNA adenine methylase	N/A
eggNOG-mapper	UHGV-0076418_31	396359.Q0SPG6_9CAUD	432.0	0	D12 class N6 adenine-specific DNA methyltransferase	N/A
PADLOC	UHGV-0076418_31	MTase_II_00039	187.2	0	Type II methyltransferase	RM
Pfam	UHGV-0076418_31	PF02086	N/A	N/A	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
NCBIFam	UHGV-0076418_31	TIGR00571.1	N/A	N/A	Dam family site-specific DNA-(adenine-N6)-methyltransferase	N/A
structural_annotation	UHGV-0076418_31	PF02086,MF_00934,TIGR00571,COG0338	N/A	N/A	N/A	N/A
KOfam	UHGV-0076418_32	K03790	110.2	2.8e-32	rimJ; [ribosomal protein S5]-alanine N-acetyltransferase [EC:2.3.1.267]	N/A
PHROG	UHGV-0076418_32	phrog_1249	54.1	0.0000000000000029	acetyltransferase	other
UniRef90	UHGV-0076418_32	UniRef90_A0A401ULH2	260.0	0	N-acetyltransferase	N/A
eggNOG-mapper	UHGV-0076418_32	1499683.CCFF01000014_gene3697	228.0	0	Acetyltransferase (GNAT) domain	N/A
Pfam	UHGV-0076418_32	PF13302	N/A	N/A	Acetyltransferase (GNAT) domain	Acetyltransf_3
COG	UHGV-0076418_32	COG1670	N/A	N/A	Protein N-acetyltransferase, RimJ/RimL family	N/A
structural_annotation	UHGV-0076418_32	PF13302,MF_02210,NF000485,COG1670	N/A	N/A	N/A	N/A
UniRef90	UHGV-0076418_33	UniRef90_A0A3B8S971	435.0	0	VanZ domain-containing protein	N/A
eggNOG-mapper	UHGV-0076418_33	373903.Hore_15700	481.0	0	N/A	N/A
PHROG	UHGV-0076418_34	phrog_4809	156.1	0	N/A	unknown function
UniRef90	UHGV-0076418_34	UniRef90_UPI00047AC3A8	278.0	0	ClbS/DfsB family four-helix bundle protein	N/A
eggNOG-mapper	UHGV-0076418_34	1408422.JHYF01000008_gene3689	283.0	0	N/A	N/A
Pfam	UHGV-0076418_34	PF08020	N/A	N/A	N/A	DUF1706
COG	UHGV-0076418_34	COG4283	N/A	N/A	N/A	N/A
PHROG	UHGV-0076418_35	phrog_36	62.7	7.5e-18	transcriptional regulator	transcription regulation
eggNOG-mapper	UHGV-0076418_35	1408823.AXUS01000025_gene2668	62.0	0.000000000968	sigma factor activity	N/A
COG	UHGV-0076418_35	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
structural_annotation	UHGV-0076418_35	PF08281,MF_00674,TIGR01636,COG1595	N/A	N/A	N/A	N/A
KOfam	UHGV-0076418_37	K18640	177.8	0	parM, stbA; plasmid segregation protein ParM	N/A
PHROG	UHGV-0076418_37	phrog_691	169.7	0	partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0076418_37	UniRef90_UPI0006B49AE2	280.0	0	ParM/StbA family protein	N/A
eggNOG-mapper	UHGV-0076418_37	1123405.AUMM01000033_gene1829	139.0	6.3e-36	StbA protein	N/A
Pfam	UHGV-0076418_37	PF17989	N/A	N/A	Actin like proteins N terminal domain	ALP_N
Pfam	UHGV-0076418_37	PF21522	N/A	N/A	Archaeal actin homologue MreB-like, C-terminal	MreB-like_C
COG	UHGV-0076418_37	COG0443	N/A	N/A	Molecular chaperone DnaK (HSP70)	N/A
structural_annotation	UHGV-0076418_37	PF06723,MF_02207,NF010498,COG1077	N/A	N/A	N/A	N/A
KOfam	UHGV-0076418_38	K03111	122.8	4.8e-36	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0076418_38	phrog_44	121.1	1e-35	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0076418_38	UniRef90_UPI0006B53099	169.0	0	single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0076418_38	642492.Clole_1072	155.0	0	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-0076418_38	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0076418_38	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0076418_38	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0076418_38	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0076418_38	PF00436,MF_00984,NF005580,COG0629	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0076418_41	1487921.DP68_08800	80.9	9.07e-18	N/A	N/A