UHGV-0077401 (vOTU-082427)

Viral Genome: UHGV-0077401

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0077401
vOTU ID	vOTU-082427
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_156594
Associated BioSample	SAMEA2784485
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	95.44 (High-quality)
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	2
Recoded stop codon	No

Viral Content
geNomad score	0.9749
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	50.01
Jumbo phage	No

Genome content
Genome length (bp)	38,425
GC content	36.87%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	49
CDS density	91%
Average CDS length (bps)	715.96
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 95.44)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0077401_1	phrog_4980	122.3	0	superinfection exclusion	moron, auxiliary metabolic gene and host takeover
eggNOG-mapper	UHGV-0077401_1	1123075.AUDP01000020_gene1514	75.1	0.000000000000191	Host cell surface-exposed lipoprotein	N/A
Pfam	UHGV-0077401_1	PF07553	N/A	N/A	Host cell surface-exposed lipoprotein	Lipoprotein_Ltp
COG	UHGV-0077401_1	COG3064	N/A	N/A	Membrane protein TolA involved in colicin uptake	N/A
KOfam	UHGV-0077401_2	K07273	99.4	5.3e-29	acm; lysozyme	N/A
PHROG	UHGV-0077401_2	phrog_291	88.6	1e-25	endolysin	lysis
UniRef90	UHGV-0077401_2	UniRef90_A0A174PB89	483.0	0	Lyzozyme M1 (1,4-beta-N-acetylmuramidase)	N/A
eggNOG-mapper	UHGV-0077401_2	469596.HMPREF9488_01959	125.0	3.06e-30	Glycosyl hydrolase family 25	N/A
Pfam	UHGV-0077401_2	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-0077401_2	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-0077401_2	PF01183,PF11623,COG3757,COG2139	N/A	N/A	N/A	N/A
PHROG	UHGV-0077401_3	phrog_1129	72.9	3.2e-21	holin	lysis
UniRef90	UHGV-0077401_3	UniRef90_UPI000E5CE6BF	162.0	0	phage holin family protein	N/A
eggNOG-mapper	UHGV-0077401_3	411461.DORFOR_00721	100.0	1e-26	N/A	N/A
Pfam	UHGV-0077401_3	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0077401_3	PF06946	N/A	N/A	N/A	N/A
PHROG	UHGV-0077401_4	phrog_1863	53.9	3.2e-16	N/A	unknown function
UniRef90	UHGV-0077401_4	UniRef90_UPI001D0865D2	81.3	1.83e-18	hemolysin XhlA family protein	N/A
eggNOG-mapper	UHGV-0077401_4	1226322.HMPREF1545_04027	81.6	1.7e-19	N/A	N/A
PHROG	UHGV-0077401_5	phrog_2310	40.2	0.000000000036	N/A	unknown function
eggNOG-mapper	UHGV-0077401_6	476272.RUMHYD_00002	112.0	1.96e-22	N/A	N/A
PHROG	UHGV-0077401_7	phrog_6616	310.9	0	tail protein	tail
UniRef90	UHGV-0077401_7	UniRef90_A0A412RR71	225.0	0	Tail fiber domain-containing protein	N/A
eggNOG-mapper	UHGV-0077401_7	33035.JPJF01000043_gene1002	156.0	5.28e-37	N/A	N/A
PHROG	UHGV-0077401_8	phrog_1194	70.0	3.1e-20	N/A	unknown function
eggNOG-mapper	UHGV-0077401_8	1280692.AUJL01000027_gene2149	54.3	0.0000000964	N/A	N/A
structural_annotation	UHGV-0077401_8	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0077401_9	phrog_1535	161.7	0	tail length tape measure protein	tail
UniRef90	UHGV-0077401_9	UniRef90_A0A1I2KTM2	113.0	8.59e-22	Phage-related protein	N/A
eggNOG-mapper	UHGV-0077401_9	1280692.AUJL01000027_gene2150	125.0	2.12e-26	phage tail tape measure protein	N/A
COG	UHGV-0077401_9	COG1511	N/A	N/A	N/A	N/A
PHROG	UHGV-0077401_10	phrog_706	138.4	4.80001e-41	N/A	unknown function
UniRef90	UHGV-0077401_10	UniRef90_A0A173TZF2	190.0	0	Bacteriophage Gp15 protein	N/A
eggNOG-mapper	UHGV-0077401_10	411459.RUMOBE_01383	188.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0077401_10	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0077401_10	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0077401_11	phrog_11299	120.3	1.4e-35	N/A	unknown function
eggNOG-mapper	UHGV-0077401_11	1298920.KI911353_gene2067	97.8	1.02e-23	N/A	N/A
PHROG	UHGV-0077401_12	phrog_3099	152.3	2.8026e-45	N/A	unknown function
eggNOG-mapper	UHGV-0077401_12	1160721.RBI_II00532	205.0	0	N/A	N/A
structural_annotation	UHGV-0077401_12	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0077401_13	phrog_3266	68.9	7.1e-20	tail completion	connector
eggNOG-mapper	UHGV-0077401_13	1449050.JNLE01000003_gene3885	105.0	7.55e-27	N/A	N/A
structural_annotation	UHGV-0077401_13	PF20765	N/A	N/A	N/A	N/A
PHROG	UHGV-0077401_14	phrog_556	90.3	1.7e-26	minor head protein	head and packaging
UniRef90	UHGV-0077401_14	UniRef90_A0A1M7NJ72	114.0	5.16e-30	Minor capsid protein	N/A
eggNOG-mapper	UHGV-0077401_14	1304866.K413DRAFT_3041	124.0	1.34e-34	N/A	N/A
Pfam	UHGV-0077401_14	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-0077401_14	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-0077401_15	phrog_3366	75.7	3.7e-22	N/A	unknown function
eggNOG-mapper	UHGV-0077401_15	1449050.JNLE01000003_gene3887	96.3	4.11e-24	N/A	N/A
Pfam	UHGV-0077401_15	PF20536	N/A	N/A	N/A	DUF6751
structural_annotation	UHGV-0077401_15	PF20536,TIGR01563	N/A	N/A	N/A	N/A
PHROG	UHGV-0077401_17	phrog_541	86.3	3.1e-25	head-tail adaptor	connector
eggNOG-mapper	UHGV-0077401_17	1449050.JNLE01000003_gene3888	88.6	5.88e-21	N/A	N/A
PHROG	UHGV-0077401_18	phrog_10	193.8	0	major head protein	head and packaging
UniRef90	UHGV-0077401_18	UniRef90_UPI00164B7107	446.0	0	phage major capsid protein	N/A
eggNOG-mapper	UHGV-0077401_18	411461.DORFOR_00744	438.0	0	COG NOG20168 non supervised orthologous group	N/A
Pfam	UHGV-0077401_18	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0077401_18	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0077401_18	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0077401_18	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0077401_19	phrog_2303	101.0	1.4e-29	head scaffolding protein	head and packaging
eggNOG-mapper	UHGV-0077401_19	1235792.C808_05367	144.0	8.69001e-41	N/A	N/A
structural_annotation	UHGV-0077401_19	PF10788,MF_02110	N/A	N/A	N/A	N/A
KOfam	UHGV-0077401_20	K07584	87.8	1.6e-25	N/A	N/A
PHROG	UHGV-0077401_20	phrog_4478	71.5	9.4e-21	peptidase	other
UniRef90	UHGV-0077401_20	UniRef90_A0A2Z4UEY6	79.7	2.88e-17	Ribosomal-processing cysteine protease Prp	N/A
eggNOG-mapper	UHGV-0077401_20	411470.RUMGNA_03236	72.4	0.00000000000000326	Cysteine protease Prp	N/A
Pfam	UHGV-0077401_20	PF04327	N/A	N/A	Cysteine protease Prp	Peptidase_Prp
COG	UHGV-0077401_20	COG2868	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0077401_20	PF04327,NF011124,COG2868	N/A	N/A	N/A	N/A
PHROG	UHGV-0077401_21	phrog_581	89.2	5.5e-26	minor head protein	head and packaging
eggNOG-mapper	UHGV-0077401_21	1449050.JNLE01000003_gene3892	132.0	4.82e-35	Phage minor capsid protein 2	N/A
Pfam	UHGV-0077401_21	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0077401_21	COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-0077401_23	phrog_581	219.4	0	minor head protein	head and packaging
UniRef90	UHGV-0077401_23	UniRef90_UPI001593C099	313.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-0077401_23	1449050.JNLE01000003_gene3892	219.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-0077401_23	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0077401_23	COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-0077401_24	phrog_533	392.7	0	portal protein	head and packaging
UniRef90	UHGV-0077401_24	UniRef90_UPI00156E473F	575.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0077401_24	411461.DORFOR_00749	497.0	0	COG NOG25118 non supervised orthologous group	N/A
Pfam	UHGV-0077401_24	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0077401_24	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-0077401_25	K06909	227.1	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0077401_25	phrog_2	117.1	2.5e-34	terminase large subunit	head and packaging
UniRef90	UHGV-0077401_25	UniRef90_UPI001F24FC3E	625.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0077401_25	1235799.C818_04217	602.0	0	Phage terminase large subunit	N/A
Pfam	UHGV-0077401_25	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
NCBIFam	UHGV-0077401_25	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0077401_25	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0077401_25	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
KOfam	UHGV-0077401_26	K07474	134.7	1.1e-39	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-0077401_26	phrog_2606	298.4	0	terminase small subunit	head and packaging
UniRef90	UHGV-0077401_26	UniRef90_A0A6B4XMY8	291.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0077401_26	1415774.U728_838	291.0	0	terminase, small subunit	N/A
Pfam	UHGV-0077401_26	PF06056	N/A	N/A	Putative ATPase subunit of terminase (gpP-like)	Terminase_5
Pfam	UHGV-0077401_26	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-0077401_26	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-0077401_26	PF03592,PF10668,NF040601,COG3728	N/A	N/A	N/A	N/A
PHROG	UHGV-0077401_27	phrog_36	51.0	0.000000000000032	transcriptional regulator	transcription regulation
eggNOG-mapper	UHGV-0077401_27	411490.ANACAC_00789	57.8	0.0000000191	N/A	N/A
structural_annotation	UHGV-0077401_27	PF02996	N/A	N/A	N/A	N/A
PHROG	UHGV-0077401_28	phrog_625	63.4	2.6e-18	N/A	unknown function
UniRef90	UHGV-0077401_28	UniRef90_A0A413YU40	210.0	0	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-0077401_28	397290.C810_01502	120.0	1.31e-33	N/A	N/A
structural_annotation	UHGV-0077401_28	PF12961,COG2028	N/A	N/A	N/A	N/A
PHROG	UHGV-0077401_29	phrog_20593	56.1	6e-16	N/A	unknown function
PHROG	UHGV-0077401_30	phrog_3886	291.8	0	N/A	unknown function
eggNOG-mapper	UHGV-0077401_30	742733.HMPREF9469_05056	343.0	0	N/A	N/A
KOfam	UHGV-0077401_31	K03744	138.7	5.19994e-41	lemA; LemA protein	N/A
PHROG	UHGV-0077401_31	phrog_1383	155.8	0	virion structural protein	head and packaging
UniRef90	UHGV-0077401_31	UniRef90_A0A414ZQW9	301.0	0	LemA family protein	N/A
eggNOG-mapper	UHGV-0077401_31	742735.HMPREF9467_00879	294.0	0	LemA family	N/A
Pfam	UHGV-0077401_31	PF04011	N/A	N/A	LemA family	LemA
COG	UHGV-0077401_31	COG1704	N/A	N/A	Magnetosome formation protein MamQ, lipoprotein antigen LemA family	N/A
structural_annotation	UHGV-0077401_31	PF04011,NF040966,COG1704	N/A	N/A	N/A	N/A
PHROG	UHGV-0077401_32	phrog_8684	55.0	3.8e-16	N/A	unknown function
UniRef90	UHGV-0077401_32	UniRef90_A0A413YU53	169.0	0	YopX domain-containing protein	N/A
eggNOG-mapper	UHGV-0077401_32	411470.RUMGNA_02199	63.9	0.000000000045	N/A	N/A
Pfam	UHGV-0077401_32	PF09643	N/A	N/A	YopX protein	YopX
structural_annotation	UHGV-0077401_32	PF09643,TIGR01671	N/A	N/A	N/A	N/A
PHROG	UHGV-0077401_33	phrog_15077	92.5	9e-27	N/A	unknown function
UniRef90	UHGV-0077401_33	UniRef90_A0A174WLY0	203.0	0	N/A	N/A
eggNOG-mapper	UHGV-0077401_33	1280698.AUJS01000007_gene1019	230.0	0	N/A	N/A
structural_annotation	UHGV-0077401_33	PF11300,NF038070	N/A	N/A	N/A	N/A
PHROG	UHGV-0077401_34	phrog_8470	306.4	0	N/A	unknown function
UniRef90	UHGV-0077401_34	UniRef90_UPI00164C094F	228.0	0	PcfJ domain-containing protein	N/A
eggNOG-mapper	UHGV-0077401_34	483218.BACPEC_01166	434.0	0	PcfJ-like protein	N/A
Pfam	UHGV-0077401_34	PF14284	N/A	N/A	PcfJ-like protein	PcfJ
structural_annotation	UHGV-0077401_34	PF14284	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0077401_35	483218.BACPEC_01167	208.0	0	N/A	N/A
PHROG	UHGV-0077401_37	phrog_7566	93.4	1.3e-27	N/A	unknown function
eggNOG-mapper	UHGV-0077401_37	1304866.K413DRAFT_1198	77.8	5.96e-17	N/A	N/A
PHROG	UHGV-0077401_38	phrog_531	42.2	0.000000000015	Rnase H	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0077401_38	UniRef90_A0A413YU26	182.0	0	RNase H type-1 domain-containing protein	N/A
eggNOG-mapper	UHGV-0077401_38	411902.CLOBOL_05701	97.4	9.05e-24	RNase H	N/A
Pfam	UHGV-0077401_38	PF00075	N/A	N/A	RNase H	RNase_H
COG	UHGV-0077401_38	COG0328	N/A	N/A	Ribonuclease HI	N/A
PHROG	UHGV-0077401_39	phrog_3584	242.2	0	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0077401_39	UniRef90_A0A4P8IFK4	342.0	0	N/A	N/A
eggNOG-mapper	UHGV-0077401_39	742741.HMPREF9475_00404	297.0	0	N/A	N/A
structural_annotation	UHGV-0077401_39	PF21578	N/A	N/A	N/A	N/A
PHROG	UHGV-0077401_41	phrog_750	57.0	3.2e-16	N/A	unknown function
eggNOG-mapper	UHGV-0077401_41	742723.HMPREF9477_00931	53.9	0.0000000604	N/A	N/A
structural_annotation	UHGV-0077401_41	PF13835,NF040858	N/A	N/A	N/A	N/A
UniRef90	UHGV-0077401_43	UniRef90_UPI001D0090A6	96.7	8.28e-25	N/A	N/A
eggNOG-mapper	UHGV-0077401_43	171693.BN988_01635	87.4	6.32e-22	N/A	N/A
Pfam	UHGV-0077401_43	PF05339	N/A	N/A	N/A	DUF739
COG	UHGV-0077401_43	COG3655	N/A	N/A	DNA-binding transcriptional regulator, XRE family	N/A
structural_annotation	UHGV-0077401_43	PF05339,NF002773,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0077401_44	K22300	42.6	0.000000000012	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0077401_44	phrog_2967	56.2	6.4e-16	transcriptional regulator	transcription regulation
UniRef90	UHGV-0077401_44	UniRef90_A0A6N7Y5A0	159.0	0	DNA-binding protein	N/A
eggNOG-mapper	UHGV-0077401_44	457412.RSAG_00795	139.0	1.17e-39	sequence-specific DNA binding	N/A
COG	UHGV-0077401_44	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0077401_44	PF01381,NF007257,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0077401_45	phrog_87	77.3	1.9e-22	metallo-protease	other
UniRef90	UHGV-0077401_45	UniRef90_A0A3R6AQ03	203.0	0	ImmA/IrrE family metallo-endopeptidase	N/A
eggNOG-mapper	UHGV-0077401_45	397288.C806_00132	197.0	0	Zn peptidase	N/A
Pfam	UHGV-0077401_45	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
COG	UHGV-0077401_45	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-0077401_45	PF06114,COG2856	N/A	N/A	N/A	N/A
Pfam	UHGV-0077401_46	PF04434	N/A	N/A	SWIM zinc finger	SWIM
eggNOG-mapper	UHGV-0077401_47	658655.HMPREF0988_00902	47.0	0.00000144	N/A	N/A
PHROG	UHGV-0077401_48	phrog_2158	187.9	0	abortive infection resistance protein	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0077401_48	UniRef90_B0MB90	248.0	0	Abi-like protein	N/A
eggNOG-mapper	UHGV-0077401_48	411490.ANACAC_00817	248.0	0	Abi-like protein	N/A
PADLOC	UHGV-0077401_48	AbiD	126.5	5.9e-37	AbiD	Abi
Pfam	UHGV-0077401_48	PF07751	N/A	N/A	Abi-like protein	Abi_2
COG	UHGV-0077401_48	COG4823	N/A	N/A	Abortive infection bacteriophage resistance protein	N/A
structural_annotation	UHGV-0077401_48	PF07751,COG4823	N/A	N/A	N/A	N/A
KOfam	UHGV-0077401_49	K06400	231.5	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0077401_49	phrog_95	251.4	0	integrase	integration and excision
UniRef90	UHGV-0077401_49	UniRef90_UPI001C0F7357	623.0	0	recombinase family protein	N/A
eggNOG-mapper	UHGV-0077401_49	1256908.HMPREF0373_00206	613.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-0077401_49	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0077401_49	PF07508	N/A	N/A	Recombinase	Recombinase
COG	UHGV-0077401_49	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0077401_49	PF07508,PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A