UHGV-0078264 (vOTU-067510)

Viral Genome: UHGV-0078264

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0078264
vOTU ID	vOTU-067510
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_151337
Associated BioSample	SAMEA2784459
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.9 (High-quality)
Trimmed provirus	Yes
CheckV viral markers	24
CheckV host markers	3
Recoded stop codon	No

Viral Content
geNomad score	0.9758
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	42.05
Jumbo phage	No

Genome content
Genome length (bp)	37,249
GC content	59.60%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	49
CDS density	93%
Average CDS length (bps)	703.47
Total tRNA genes	2
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
UniRef90	UHGV-0078264_1	UniRef90_UPI001EE37DC2	97.1	9.66e-25	GlsB/YeaQ/YmgE family stress response membrane protein	N/A
eggNOG-mapper	UHGV-0078264_1	748224.HMPREF9436_01415	94.7	1.13e-24	Transglycosylase associated protein	N/A
Pfam	UHGV-0078264_1	PF04226	N/A	N/A	Transglycosylase associated protein	Transgly_assoc
COG	UHGV-0078264_1	COG2261	N/A	N/A	N/A	N/A
KOfam	UHGV-0078264_2	K14059	127.9	1.5e-37	int; integrase	N/A
PHROG	UHGV-0078264_2	phrog_1	110.1	2.6e-32	integrase	integration and excision
UniRef90	UHGV-0078264_2	UniRef90_A0A3F3JU91	742.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-0078264_2	748224.HMPREF9436_03382	640.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0078264_2	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-0078264_2	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0078264_2	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0078264_2	PF00589,PF14659,MF_01808,NF007246,COG4973	N/A	N/A	N/A	N/A
PHROG	UHGV-0078264_4	phrog_750	46.4	0.00000000000049	N/A	unknown function
eggNOG-mapper	UHGV-0078264_4	742723.HMPREF9477_00931	50.8	0.000000785	N/A	N/A
structural_annotation	UHGV-0078264_4	PF13835,TIGR01714,COG1321	N/A	N/A	N/A	N/A
PHROG	UHGV-0078264_5	phrog_888	127.2	1.1e-37	N/A	unknown function
UniRef90	UHGV-0078264_5	UniRef90_A0A6N7TMA2	127.0	1.44e-32	SHOCT domain-containing protein	N/A
eggNOG-mapper	UHGV-0078264_5	1151292.QEW_1347	89.7	8.69e-19	Short C-terminal domain	N/A
Pfam	UHGV-0078264_5	PF14471	N/A	N/A	N/A	DUF4428
Pfam	UHGV-0078264_5	PF09851	N/A	N/A	Short C-terminal domain	SHOCT
structural_annotation	UHGV-0078264_5	PF15947,PF14471	N/A	N/A	N/A	N/A
KOfam	UHGV-0078264_7	K18830	62.7	7.8e-18	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-0078264_7	phrog_8	50.2	0.000000000000036	transcriptional regulator	transcription regulation
UniRef90	UHGV-0078264_7	UniRef90_E2ZIF0	248.0	0	DNA-binding helix-turn-helix protein	N/A
eggNOG-mapper	UHGV-0078264_7	748224.HMPREF9436_01444	248.0	0	N/A	N/A
PADLOC	UHGV-0078264_7	retron_type_VI_hth_cluster2_1	45.7	0.0000000000012	N/A	Retron
Pfam	UHGV-0078264_7	PF12844	N/A	N/A	Helix-turn-helix domain	HTH_19
COG	UHGV-0078264_7	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0078264_7	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0078264_9	PF13601,MF_01819,TIGR03433,COG1695	N/A	N/A	N/A	N/A
PHROG	UHGV-0078264_12	phrog_373	121.6	7.1e-36	anti-repressor	transcription regulation
UniRef90	UHGV-0078264_12	UniRef90_E2ZIF5	435.0	0	Phage regulatory protein, Rha family	N/A
eggNOG-mapper	UHGV-0078264_12	748224.HMPREF9436_01449	435.0	0	Phage regulatory protein Rha (Phage_pRha)	N/A
Pfam	UHGV-0078264_12	PF09669	N/A	N/A	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
NCBIFam	UHGV-0078264_12	TIGR02681.1	N/A	N/A	phage regulatory protein, Rha family	N/A
COG	UHGV-0078264_12	COG3646	N/A	N/A	Phage regulatory protein Rha	N/A
structural_annotation	UHGV-0078264_12	PF09669,TIGR02681,COG3646	N/A	N/A	N/A	N/A
UniRef90	UHGV-0078264_13	UniRef90_UPI00130EBC54	142.0	1.38028e-42	N/A	N/A
eggNOG-mapper	UHGV-0078264_13	1229751.R9QLK3_9CAUD	50.8	0.00000029	N/A	N/A
structural_annotation	UHGV-0078264_13	PF05339,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-0078264_14	phrog_32852	193.9	0	N/A	unknown function
PHROG	UHGV-0078264_15	phrog_37789	162.5	0	N/A	unknown function
Pfam	UHGV-0078264_17	PF06221	N/A	N/A	Putative zinc finger motif, C2HC5-type	zf-C2HC5
UniRef90	UHGV-0078264_19	UniRef90_UPI001D0E65C2	127.0	6.08e-36	N/A	N/A
structural_annotation	UHGV-0078264_19	PF12957	N/A	N/A	N/A	N/A
PHROG	UHGV-0078264_20	phrog_1733	67.4	1.8e-19	N/A	unknown function
eggNOG-mapper	UHGV-0078264_20	665956.HMPREF1032_03597	165.0	8.88998e-41	DNA binding	N/A
COG	UHGV-0078264_20	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-0078264_20	PF03677	N/A	N/A	N/A	N/A
KOfam	UHGV-0078264_21	K03546	56.3	3.7e-16	sbcC, rad50; DNA repair protein SbcC/Rad50	N/A
PHROG	UHGV-0078264_21	phrog_1499	464.5	0	N/A	unknown function
UniRef90	UHGV-0078264_21	UniRef90_A0A3A6KBP8	809.0	0	Chromosome segregation protein SMC	N/A
eggNOG-mapper	UHGV-0078264_21	1235798.C817_04766	484.0	0	AAA ATPase domain	N/A
Pfam	UHGV-0078264_21	PF13476	N/A	N/A	AAA domain	AAA_23
COG	UHGV-0078264_21	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-0078264_21	PF11398,MF_00365,TIGR00634,COG0497	N/A	N/A	N/A	N/A
PHROG	UHGV-0078264_22	phrog_124	226.1	0	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0078264_22	UniRef90_UPI00122C2B12	588.0	0	ATP-binding protein	N/A
eggNOG-mapper	UHGV-0078264_22	645991.Sgly_0321	357.0	0	AAA domain	N/A
Pfam	UHGV-0078264_22	PF13479	N/A	N/A	AAA domain	AAA_24
structural_annotation	UHGV-0078264_22	PF13479,MF_00268,TIGR01618,COG0468	N/A	N/A	N/A	N/A
PHROG	UHGV-0078264_23	phrog_2698	194.9	0	N/A	unknown function
UniRef90	UHGV-0078264_23	UniRef90_A0A291T9B6	329.0	0	N/A	N/A
eggNOG-mapper	UHGV-0078264_23	394503.Ccel_3308	122.0	4.19e-33	N/A	N/A
structural_annotation	UHGV-0078264_23	PF05037	N/A	N/A	N/A	N/A
KOfam	UHGV-0078264_24	K17677	352.8	0	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	N/A
PHROG	UHGV-0078264_24	phrog_16	278.1	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0078264_24	UniRef90_A0A3A6K1C0	1001.0	0	DEAD/DEAH box helicase	N/A
eggNOG-mapper	UHGV-0078264_24	610130.Closa_1369	759.0	0	DEAD-like helicases superfamily	N/A
PADLOC	UHGV-0078264_24	mREase_IV_00005	140.4	1.6e-41	Type IV methyl-directed restriction enzyme	RM
Pfam	UHGV-0078264_24	PF04851	N/A	N/A	Type III restriction enzyme, res subunit	ResIII
Pfam	UHGV-0078264_24	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
COG	UHGV-0078264_24	COG1061	N/A	N/A	Superfamily II DNA or RNA helicase	N/A
structural_annotation	UHGV-0078264_24	PF04851,PF16203,MF_01489,NF008521,COG1061	N/A	N/A	N/A	N/A
KOfam	UHGV-0078264_25	K07505	383.0	0	repA; regulatory protein RepA	N/A
PHROG	UHGV-0078264_25	phrog_2597	1106.9	0	DNA primase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0078264_25	UniRef90_A0A2A6Z731	1388.0	0	DNA primase	N/A
eggNOG-mapper	UHGV-0078264_25	999413.HMPREF1094_00232	865.0	0	Primase C terminal 2 (PriCT-2)	N/A
Pfam	UHGV-0078264_25	PF08707	N/A	N/A	Primase C terminal 2 (PriCT-2)	PriCT_2
Pfam	UHGV-0078264_25	PF13481	N/A	N/A	AAA domain	AAA_25
COG	UHGV-0078264_25	COG3598	N/A	N/A	RecA-family ATPase	N/A
structural_annotation	UHGV-0078264_25	PF13481,PF16793,PF08220,MF_00350,MF_00700,NF006606,NF001641,COG3598,COG3285	N/A	N/A	N/A	N/A
KOfam	UHGV-0078264_26	K01160	45.9	0.0000000000015	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0078264_26	phrog_140	90.7	1.9e-26	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0078264_26	UniRef90_UPI00122CFAB3	257.0	0	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0078264_26	478749.BRYFOR_07588	147.0	6.72623e-44	endodeoxyribonuclease RusA	N/A
Pfam	UHGV-0078264_26	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0078264_26	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0078264_26	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-0078264_27	phrog_36	51.5	0.000000000000021	transcriptional regulator	transcription regulation
UniRef90	UHGV-0078264_27	UniRef90_A0A3E2U224	132.0	3.41e-37	Sigma70_r4_2 domain-containing protein	N/A
eggNOG-mapper	UHGV-0078264_27	748224.HMPREF9436_01463	266.0	0	N/A	N/A
structural_annotation	UHGV-0078264_27	PF04545,MF_00674,NF009180,COG1342	N/A	N/A	N/A	N/A
PHROG	UHGV-0078264_28	phrog_2412	90.9	1.4e-26	N/A	unknown function
eggNOG-mapper	UHGV-0078264_28	742738.HMPREF9460_02504	114.0	8.14e-31	N/A	N/A
KOfam	UHGV-0078264_29	K06909	91.0	1.6e-26	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0078264_29	phrog_2	118.7	8.3e-35	terminase large subunit	head and packaging
UniRef90	UHGV-0078264_29	UniRef90_A0A844EGH8	847.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0078264_29	1449050.JNLE01000003_gene3895	410.0	0	phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-0078264_29	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-0078264_29	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0078264_29	PF04466,PF20441,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0078264_30	phrog_533	260.6	0	portal protein	head and packaging
UniRef90	UHGV-0078264_30	UniRef90_UPI00110638F1	376.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0078264_30	718252.FP2_06700	672.0	0	N/A	N/A
Pfam	UHGV-0078264_30	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0078264_30	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0078264_31	phrog_581	358.7	0	minor head protein	head and packaging
UniRef90	UHGV-0078264_31	UniRef90_A0A1C5NZK4	751.0	0	Phage minor capsid protein 2	N/A
eggNOG-mapper	UHGV-0078264_31	748224.HMPREF9436_03339	731.0	0	N/A	N/A
Pfam	UHGV-0078264_31	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0078264_31	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0078264_31	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-0078264_32	phrog_27009	50.7	0.000000000000028	N/A	unknown function
PHROG	UHGV-0078264_33	phrog_194	81.2	1.7e-23	head scaffolding protein	head and packaging
UniRef90	UHGV-0078264_33	UniRef90_D4K444	229.0	0	Phage minor structural protein GP20	N/A
eggNOG-mapper	UHGV-0078264_33	748224.HMPREF9436_03336	293.0	0	Phage minor structural protein GP20	N/A
Pfam	UHGV-0078264_33	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-0078264_33	PF06810,MF_02110	N/A	N/A	N/A	N/A
PHROG	UHGV-0078264_34	phrog_267	85.8	5.6e-25	major head protein	head and packaging
UniRef90	UHGV-0078264_34	UniRef90_A0A0D8J2H9	355.0	0	p22 coat protein 5	N/A
eggNOG-mapper	UHGV-0078264_34	718252.FP2_06660	398.0	0	N/A	N/A
structural_annotation	UHGV-0078264_34	PF11651,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0078264_35	phrog_541	85.6	5.1e-25	head-tail adaptor	connector
PHROG	UHGV-0078264_36	phrog_3366	107.0	1.5e-31	N/A	unknown function
structural_annotation	UHGV-0078264_36	PF20536	N/A	N/A	N/A	N/A
PHROG	UHGV-0078264_37	phrog_556	84.2	1.2e-24	minor head protein	head and packaging
UniRef90	UHGV-0078264_37	UniRef90_UPI0015CF23D2	271.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-0078264_37	718252.FP2_06630	199.0	0	Minor capsid protein	N/A
Pfam	UHGV-0078264_37	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-0078264_37	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-0078264_38	phrog_3266	143.9	5.10073e-43	tail completion	connector
UniRef90	UHGV-0078264_38	UniRef90_UPI000D830B30	84.3	6.02e-18	chloramphenicol resistance protein	N/A
eggNOG-mapper	UHGV-0078264_38	748224.HMPREF9436_03331	287.0	0	N/A	N/A
structural_annotation	UHGV-0078264_38	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-0078264_39	phrog_820	116.7	1.3e-34	major tail protein	tail
eggNOG-mapper	UHGV-0078264_39	748224.HMPREF9436_03330	339.0	0	N/A	N/A
structural_annotation	UHGV-0078264_39	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0078264_40	phrog_4450	163.2	0	N/A	unknown function
structural_annotation	UHGV-0078264_40	PF20378	N/A	N/A	N/A	N/A
PHROG	UHGV-0078264_41	phrog_706	126.0	2.5e-37	N/A	unknown function
UniRef90	UHGV-0078264_41	UniRef90_E2ZNP9	399.0	0	Bacteriophage Gp15 protein	N/A
eggNOG-mapper	UHGV-0078264_41	748224.HMPREF9436_03328	399.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0078264_41	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0078264_41	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0078264_42	phrog_28775	970.1	0	tail length tape measure protein	tail
UniRef90	UHGV-0078264_42	UniRef90_A0A2J4JRN1	1216.0	0	TMP_3 domain-containing protein	N/A
eggNOG-mapper	UHGV-0078264_42	748224.HMPREF9436_03326	403.0	0	Phage tail tape measure protein, TP901 family	N/A
Pfam	UHGV-0078264_42	PF20155	N/A	N/A	Tape measure protein	TMP_3
NCBIFam	UHGV-0078264_42	TIGR02675.1	N/A	N/A	tape measure protein	N/A
COG	UHGV-0078264_42	COG5283	N/A	N/A	Phage-related tail protein	N/A
structural_annotation	UHGV-0078264_42	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-0078264_43	phrog_36410	41.5	0.000000000017	N/A	unknown function
UniRef90	UHGV-0078264_43	UniRef90_UPI00130E98E0	288.0	0	phage tail family protein	N/A
eggNOG-mapper	UHGV-0078264_43	748224.HMPREF9436_03325	553.0	0	Phage tail protein	N/A
structural_annotation	UHGV-0078264_43	PF16774,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0078264_44	phrog_538	202.7	0	minor tail protein	tail
UniRef90	UHGV-0078264_44	UniRef90_UPI001899858F	110.0	6.91e-24	siphovirus ReqiPepy6 Gp37-like family protein	N/A
eggNOG-mapper	UHGV-0078264_44	748224.HMPREF9436_03324	634.0	0	N/A	N/A
Pfam	UHGV-0078264_44	PF14594	N/A	N/A	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
structural_annotation	UHGV-0078264_44	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0078264_45	phrog_9534	297.8	0	head protein	head and packaging
eggNOG-mapper	UHGV-0078264_45	748224.HMPREF9436_00702	362.0	0	COG NOG18825 non supervised orthologous group	N/A
structural_annotation	UHGV-0078264_45	PF20747	N/A	N/A	N/A	N/A
PHROG	UHGV-0078264_46	phrog_29248	63.3	2.5e-18	N/A	unknown function
PHROG	UHGV-0078264_47	phrog_2310	64.6	8e-19	N/A	unknown function
UniRef90	UHGV-0078264_48	UniRef90_UPI0018835F0C	515.0	0	collagen-like protein	N/A
eggNOG-mapper	UHGV-0078264_48	411483.FAEPRAA2165_00757	157.0	7.05e-40	N/A	N/A
structural_annotation	UHGV-0078264_48	PF10651	N/A	N/A	N/A	N/A