UHGV-0078303 (vOTU-068688)

Viral Genome: UHGV-0078303

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0078303
vOTU ID	vOTU-068688
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_152534
Associated BioSample	SAMEA2784515
Viral genome confidence	Confident

Quality assessment
CheckV method	Provirus
CheckV completeness	99.9 (High-quality)
Trimmed provirus	Yes
CheckV viral markers	13
CheckV host markers	7
Recoded stop codon	No

Viral Content
geNomad score	0.973
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	43.37
Jumbo phage	No

Genome content
Genome length (bp)	32,714
GC content	43.56%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	42
CDS density	95%
Average CDS length (bps)	738.14
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0078303_1	phrog_1129	77.6	1e-22	holin	lysis
UniRef90	UHGV-0078303_1	UniRef90_A0A416AFW1	147.0	2.10195e-44	Enolase	N/A
eggNOG-mapper	UHGV-0078303_1	411461.DORFOR_00721	111.0	5.45e-31	N/A	N/A
Pfam	UHGV-0078303_1	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0078303_1	PF06946	N/A	N/A	N/A	N/A
PHROG	UHGV-0078303_2	phrog_1863	65.6	3.9e-19	N/A	unknown function
eggNOG-mapper	UHGV-0078303_2	1226322.HMPREF1545_04027	67.8	0.000000000000071	N/A	N/A
KOfam	UHGV-0078303_5	K01447	69.7	4.4e-20	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0078303_5	phrog_35436	127.9	4.8e-38	amidase	lysis
UniRef90	UHGV-0078303_5	UniRef90_A0A416AFQ9	378.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-0078303_5	553973.CLOHYLEM_04450	191.0	0	Ami_2	N/A
Pfam	UHGV-0078303_5	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
Pfam	UHGV-0078303_5	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-0078303_5	COG3409	N/A	N/A	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	N/A
structural_annotation	UHGV-0078303_5	PF01510,PF01471,MF_04111,NF008758,COG5632,COG3409	N/A	N/A	N/A	N/A
KOfam	UHGV-0078303_6	K04763	233.7	0	xerD; integrase/recombinase XerD	N/A
PHROG	UHGV-0078303_6	phrog_1	181.2	0	integrase	integration and excision
UniRef90	UHGV-0078303_6	UniRef90_UPI0011DD7E30	257.0	0	tyrosine-type recombinase/integrase	N/A
eggNOG-mapper	UHGV-0078303_6	1121870.AUAA01000096_gene1116	238.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0078303_6	PF13495	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
Pfam	UHGV-0078303_6	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0078303_6	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0078303_6	PF00589,PF02899,MF_01807,TIGR02224,COG4973	N/A	N/A	N/A	N/A
PHROG	UHGV-0078303_7	phrog_31398	119.0	3.9e-35	N/A	unknown function
eggNOG-mapper	UHGV-0078303_7	411459.RUMOBE_01721	116.0	1.41e-26	N/A	N/A
Pfam	UHGV-0078303_7	PF10651	N/A	N/A	BppU N-terminal domain	BppU_N
PHROG	UHGV-0078303_9	phrog_18110	435.0	0	N/A	unknown function
UniRef90	UHGV-0078303_9	UniRef90_A0A373S6M8	492.0	0	Prophage_tail domain-containing protein	N/A
eggNOG-mapper	UHGV-0078303_9	411459.RUMOBE_01723	378.0	0	Phage minor structural protein	N/A
Pfam	UHGV-0078303_9	PF18994	N/A	N/A	Prophage endopeptidase tail N-terminal domain	Prophage_tailD1
Pfam	UHGV-0078303_9	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
Pfam	UHGV-0078303_9	PF13884	N/A	N/A	Chaperone of endosialidase	Peptidase_S74
NCBIFam	UHGV-0078303_9	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0078303_9	COG4926	N/A	N/A	Phage-related protein	N/A
PHROG	UHGV-0078303_10	phrog_33	45.2	0.0000000000023	distal tail protein Dit	tail
UniRef90	UHGV-0078303_10	UniRef90_UPI001D05C493	217.0	0	phage tail family protein	N/A
eggNOG-mapper	UHGV-0078303_10	411459.RUMOBE_00925	98.2	4.33e-22	phage tail	N/A
COG	UHGV-0078303_10	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0078303_10	PF20753,PF19266,TIGR01633,COG4722	N/A	N/A	N/A	N/A
KOfam	UHGV-0078303_11	K20361	52.5	0.000000000000002	USO1; intracellular protein transport protein USO1	N/A
PHROG	UHGV-0078303_11	phrog_1272	231.4	0	tail length tape measure protein	tail
UniRef90	UHGV-0078303_11	UniRef90_A0A350S489	665.0	0	PhageMin_Tail domain-containing protein	N/A
eggNOG-mapper	UHGV-0078303_11	742741.HMPREF9475_00433	571.0	0	Phage tail tape measure protein, TP901 family	N/A
Pfam	UHGV-0078303_11	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
COG	UHGV-0078303_11	COG3206	N/A	N/A	Exopolysaccharide export protein/domain GumC/Wzc1	N/A
structural_annotation	UHGV-0078303_11	PF10145,PF05384,TIGR01760,NF006545,COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-0078303_12	phrog_25901	187.5	0	N/A	unknown function
eggNOG-mapper	UHGV-0078303_12	411468.CLOSCI_01498	159.0	0	N/A	N/A
structural_annotation	UHGV-0078303_12	PF10109	N/A	N/A	N/A	N/A
PHROG	UHGV-0078303_13	phrog_13494	89.2	3.3e-26	N/A	unknown function
eggNOG-mapper	UHGV-0078303_13	411468.CLOSCI_01497	74.3	6.41e-16	N/A	N/A
structural_annotation	UHGV-0078303_13	PF20378	N/A	N/A	N/A	N/A
PHROG	UHGV-0078303_14	phrog_88	147.5	6.44597e-44	major tail protein	tail
UniRef90	UHGV-0078303_14	UniRef90_A0A412Q217	317.0	0	Major tail protein	N/A
eggNOG-mapper	UHGV-0078303_14	411468.CLOSCI_01496	309.0	0	phage major tail protein, phi13 family	N/A
NCBIFam	UHGV-0078303_14	TIGR01603.1	N/A	N/A	major tail protein	N/A
COG	UHGV-0078303_14	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0078303_14	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-0078303_15	phrog_78	51.5	0.000000000000019	tail terminator	connector
UniRef90	UHGV-0078303_15	UniRef90_I2E8V8	69.3	0.000000000000839	Gp10	N/A
eggNOG-mapper	UHGV-0078303_15	411468.CLOSCI_01495	166.0	0	N/A	N/A
structural_annotation	UHGV-0078303_15	PF05657,NF040576,COG3167	N/A	N/A	N/A	N/A
PHROG	UHGV-0078303_16	phrog_5	47.5	0.00000000000046	tail completion or Neck1 protein	connector
UniRef90	UHGV-0078303_16	UniRef90_B0NDG6	199.0	0	Phage protein, HK97 gp10 family	N/A
eggNOG-mapper	UHGV-0078303_16	411468.CLOSCI_01494	199.0	0	Phage protein, HK97 gp10 family	N/A
NCBIFam	UHGV-0078303_16	TIGR01725.1	N/A	N/A	HK97-gp10 family putative phage morphogenesis protein	N/A
structural_annotation	UHGV-0078303_16	PF04883,TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-0078303_17	phrog_25	41.6	0.000000000021	head closure Hc1	connector
UniRef90	UHGV-0078303_17	UniRef90_A0A412Q2M1	116.0	8.56e-32	Phage head-tail joining protein	N/A
eggNOG-mapper	UHGV-0078303_17	411459.RUMOBE_01731	72.8	0.00000000000000298	Phage head-tail adaptor	N/A
Pfam	UHGV-0078303_17	PF05521	N/A	N/A	Phage head-tail joining protein	Phage_H_T_join
NCBIFam	UHGV-0078303_17	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
structural_annotation	UHGV-0078303_17	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
UniRef90	UHGV-0078303_18	UniRef90_A0A412Q2I2	118.0	9.55e-33	Phage gp6-like head-tail connector protein	N/A
eggNOG-mapper	UHGV-0078303_18	411468.CLOSCI_01492	102.0	2.86e-27	N/A	N/A
NCBIFam	UHGV-0078303_18	TIGR01560.2	N/A	N/A	head-tail connector protein	N/A
structural_annotation	UHGV-0078303_18	PF05135,TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-0078303_19	phrog_10	231.2	0	major head protein	head and packaging
UniRef90	UHGV-0078303_19	UniRef90_A0A415K1C7	570.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0078303_19	742741.HMPREF9475_00425	531.0	0	Phage capsid family	N/A
Pfam	UHGV-0078303_19	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0078303_19	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0078303_19	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0078303_19	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-0078303_20	K01358	107.3	2e-31	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0078303_20	phrog_94	210.4	0	head maturation protease	head and packaging
UniRef90	UHGV-0078303_20	UniRef90_A0A1C5T576	394.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-0078303_20	742741.HMPREF9475_00424	376.0	0	Clp protease	N/A
Pfam	UHGV-0078303_20	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0078303_20	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-0078303_20	PF00574,MF_00444,NF011090,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-0078303_21	phrog_12	283.1	0	portal protein	head and packaging
UniRef90	UHGV-0078303_21	UniRef90_A0A412Q229	608.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0078303_21	411468.CLOSCI_01489	605.0	0	Phage portal protein	N/A
Pfam	UHGV-0078303_21	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0078303_21	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0078303_21	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0078303_21	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-0078303_22	phrog_9	374.3	0	terminase large subunit	head and packaging
UniRef90	UHGV-0078303_22	UniRef90_A0A174ZPG1	984.0	0	Phage terminase-like protein, large subunit	N/A
eggNOG-mapper	UHGV-0078303_22	411468.CLOSCI_01488	961.0	0	Phage Terminase	N/A
Pfam	UHGV-0078303_22	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0078303_22	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0078303_22	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0078303_22	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0078303_23	phrog_83	103.0	2.8e-30	terminase small subunit	head and packaging
UniRef90	UHGV-0078303_23	UniRef90_B0NDF9	259.0	0	Phage terminase, small subunit, P27 family	N/A
eggNOG-mapper	UHGV-0078303_23	411468.CLOSCI_01487	259.0	0	Phage terminase, small subunit	N/A
Pfam	UHGV-0078303_23	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
NCBIFam	UHGV-0078303_23	TIGR01558.1	N/A	N/A	phage terminase small subunit P27 family	N/A
COG	UHGV-0078303_23	COG3747	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-0078303_23	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-0078303_24	phrog_144	85.9	4.8e-25	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0078303_24	UniRef90_B0NDF8	236.0	0	HNH endonuclease domain protein	N/A
eggNOG-mapper	UHGV-0078303_24	411468.CLOSCI_01486	236.0	0	N/A	N/A
PHROG	UHGV-0078303_25	phrog_1558	117.0	1.4e-34	N/A	unknown function
UniRef90	UHGV-0078303_25	UniRef90_A0A174GQI9	81.3	1.42e-16	Sigma-70 region 4 type 2	N/A
eggNOG-mapper	UHGV-0078303_25	742741.HMPREF9475_00419	181.0	0	N/A	N/A
structural_annotation	UHGV-0078303_25	PF06530,TIGR01636	N/A	N/A	N/A	N/A
PHROG	UHGV-0078303_27	phrog_7566	107.6	5.6e-32	N/A	unknown function
eggNOG-mapper	UHGV-0078303_27	411459.RUMOBE_00948	102.0	5.01e-27	N/A	N/A
PHROG	UHGV-0078303_29	phrog_24368	51.8	0.000000000000013	N/A	unknown function
eggNOG-mapper	UHGV-0078303_29	1235792.C808_00071	49.7	0.00000697	N/A	N/A
PHROG	UHGV-0078303_31	phrog_20441	62.0	1.1e-17	N/A	unknown function
UniRef90	UHGV-0078303_31	UniRef90_UPI00189AA79A	151.0	1.4013e-45	N/A	N/A
PHROG	UHGV-0078303_32	phrog_424	92.0	5.5e-27	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0078303_32	UniRef90_A0A2H4JC51	575.0	0	Putative 3'-phosphoadenosine 5'-phosphosulfatesulfotransferase/FAD synthetase-related enzyme	N/A
eggNOG-mapper	UHGV-0078303_32	411461.DORFOR_01142	566.0	0	N/A	N/A
COG	UHGV-0078303_32	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-0078303_32	PF01507,MF_00064,TIGR00434,COG0175	N/A	N/A	N/A	N/A
KOfam	UHGV-0078303_33	K00558	233.7	0	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-0078303_33	phrog_116	267.3	0	DNA methyltransferase	other
UniRef90	UHGV-0078303_33	UniRef90_A0A3R6VZF5	887.0	0	DNA (cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-0078303_33	1235800.C819_02255	676.0	0	C-5 cytosine-specific DNA methylase	N/A
PADLOC	UHGV-0078303_33	MTase_II_00020	119.4	3.4e-39	Type II methyltransferase	RM
Pfam	UHGV-0078303_33	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
COG	UHGV-0078303_33	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0078303_33	PF00145,MF_00351,TIGR00675,COG0270	N/A	N/A	N/A	N/A
KOfam	UHGV-0078303_34	K07319	91.7	4.5e-27	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	N/A
PHROG	UHGV-0078303_34	phrog_16	231.3	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0078303_34	UniRef90_A0A373ZDW3	1687.0	0	DNA methylase N-4	N/A
eggNOG-mapper	UHGV-0078303_34	1298920.KI911353_gene2709	1384.0	0	DEAD-like helicases superfamily	N/A
Pfam	UHGV-0078303_34	PF00176	N/A	N/A	SNF2-related domain	SNF2-rel_dom
Pfam	UHGV-0078303_34	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-0078303_34	COG0553	N/A	N/A	Superfamily II DNA or RNA helicase, SNF2 family	N/A
structural_annotation	UHGV-0078303_34	PF01555,PF16203,PF04851,MF_01821,MF_00472,NF041790,NF008572,COG0553,COG0863	N/A	N/A	N/A	N/A
KOfam	UHGV-0078303_35	K03091	47.1	0.00000000000047	sigH; RNA polymerase sporulation-specific sigma factor	N/A
COG	UHGV-0078303_35	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
UniRef90	UHGV-0078303_36	UniRef90_A0A417PKX1	303.0	0	RNase H type-1 domain-containing protein	N/A
eggNOG-mapper	UHGV-0078303_36	1116472.MGMO_8c00720	62.4	0.000000000307	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids	N/A
COG	UHGV-0078303_36	COG0328	N/A	N/A	Ribonuclease HI	N/A
structural_annotation	UHGV-0078303_36	PF00075,MF_00042,NF001236,COG0328	N/A	N/A	N/A	N/A
PHROG	UHGV-0078303_37	phrog_3584	135.3	4.1e-40	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0078303_37	483218.BACPEC_01173	231.0	0	N/A	N/A
structural_annotation	UHGV-0078303_37	PF21578,NF041486	N/A	N/A	N/A	N/A
UniRef90	UHGV-0078303_39	UniRef90_R5VU56	131.0	1e-37	HTH_11 domain-containing protein	N/A
structural_annotation	UHGV-0078303_39	PF20063	N/A	N/A	N/A	N/A
PHROG	UHGV-0078303_42	phrog_585	110.8	9.5e-33	N/A	unknown function
UniRef90	UHGV-0078303_42	UniRef90_A0A373ZCW0	247.0	0	N/A	N/A
eggNOG-mapper	UHGV-0078303_42	97138.C820_00628	99.8	2.76e-25	N/A	N/A
Pfam	UHGV-0078303_42	PF10711	N/A	N/A	N/A	DUF2513
structural_annotation	UHGV-0078303_42	PF10711,TIGR03433,COG1695	N/A	N/A	N/A	N/A