UHGV-0078695 (vOTU-003802)

Viral Genome: UHGV-0078695

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0078695
vOTU ID	vOTU-003802
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_151842
Associated BioSample	SAMEA2784477
Viral genome confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100 (Complete)
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.98
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	33.75
Jumbo phage	No

Genome content
Genome length (bp)	28,413
GC content	48.74%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	50
CDS density	92%
Average CDS length (bps)	525.54
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0078695_1	phrog_58	89.6	4.1e-26	tail length tape measure protein	tail
eggNOG-mapper	UHGV-0078695_1	411470.RUMGNA_02228	91.7	4.47e-19	tape measure	N/A
COG	UHGV-0078695_1	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
PHROG	UHGV-0078695_2	phrog_20385	96.9	2.2e-28	minor tail protein	tail
eggNOG-mapper	UHGV-0078695_2	397287.C807_03967	202.0	0	N/A	N/A
structural_annotation	UHGV-0078695_2	PF16774,PF20753,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0078695_3	phrog_7064	91.2	0	tail protein	tail
eggNOG-mapper	UHGV-0078695_3	1235800.C819_04023	292.0	0	N/A	N/A
structural_annotation	UHGV-0078695_3	PF14594,TIGR03361,COG4379	N/A	N/A	N/A	N/A
PHROG	UHGV-0078695_4	phrog_5811	101.2	9e-30	N/A	unknown function
eggNOG-mapper	UHGV-0078695_4	1469948.JPNB01000001_gene705	114.0	4.33e-26	Glycine rich protein	N/A
eggNOG-mapper	UHGV-0078695_5	910314.HMPREF9220_1078	79.0	2.18e-17	N/A	N/A
structural_annotation	UHGV-0078695_5	PF16407,NF032891,COG5456	N/A	N/A	N/A	N/A
PHROG	UHGV-0078695_7	phrog_13589	188.6	0	N/A	unknown function
eggNOG-mapper	UHGV-0078695_7	411460.RUMTOR_01324	235.0	0	N/A	N/A
eggNOG-mapper	UHGV-0078695_8	428125.CLOLEP_01435	51.2	0.00001	N/A	N/A
PHROG	UHGV-0078695_9	phrog_937	53.3	0.0000000000000056	hemolysin	other
UniRef90	UHGV-0078695_9	UniRef90_A0A385E0Y4	52.0	0.00000285	Hemolysin	N/A
eggNOG-mapper	UHGV-0078695_9	742740.HMPREF9474_03172	60.8	0.00000000015	N/A	N/A
PHROG	UHGV-0078695_10	phrog_1129	76.8	1.8e-22	holin	lysis
UniRef90	UHGV-0078695_10	UniRef90_A0A415MF35	131.0	3.73e-38	Holin	N/A
eggNOG-mapper	UHGV-0078695_10	702450.CUW_0551	116.0	4.01e-33	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-0078695_10	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0078695_10	PF06946	N/A	N/A	N/A	N/A
KOfam	UHGV-0078695_11	K01447	57.3	3.3e-16	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0078695_11	phrog_5182	112.7	5.5e-33	endolysin	lysis
UniRef90	UHGV-0078695_11	UniRef90_A0A7G9G6X7	471.0	0	Amidase	N/A
eggNOG-mapper	UHGV-0078695_11	35760.BCHO_0821	83.2	0.00000000000000162	N-acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-0078695_11	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
Pfam	UHGV-0078695_11	PF08239	N/A	N/A	Bacterial SH3 domain	SH3_3
COG	UHGV-0078695_11	COG5632	N/A	N/A	N-acetylmuramoyl-L-alanine amidase CwlA	N/A
structural_annotation	UHGV-0078695_11	PF01510,PF18342,MF_04111,NF008758,NF040670,COG5632	N/A	N/A	N/A	N/A
KOfam	UHGV-0078695_12	K14059	63.2	5.3e-18	int; integrase	N/A
PHROG	UHGV-0078695_12	phrog_1	105.4	7.8e-31	integrase	integration and excision
UniRef90	UHGV-0078695_12	UniRef90_UPI00101EF3B7	527.0	0	tyrosine-type recombinase/integrase	N/A
eggNOG-mapper	UHGV-0078695_12	1235792.C808_04693	449.0	0	Belongs to the 'phage' integrase family	N/A
COG	UHGV-0078695_12	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0078695_12	PF00589,MF_01808,TIGR02224,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-0078695_13	phrog_7115	137.3	5.29999e-41	N/A	unknown function
UniRef90	UHGV-0078695_13	UniRef90_A0A396KU40	301.0	0	PH domain-containing protein	N/A
eggNOG-mapper	UHGV-0078695_13	1280698.AUJS01000007_gene1000	298.0	0	Bacterial PH domain	N/A
Pfam	UHGV-0078695_13	PF08000	N/A	N/A	Bacterial PH domain	bPH_1
PHROG	UHGV-0078695_14	phrog_87	69.4	4.3e-20	metallo-protease	other
UniRef90	UHGV-0078695_14	UniRef90_R5IRU3	206.0	0	Predicted Zn peptidase	N/A
eggNOG-mapper	UHGV-0078695_14	1235802.C823_04751	119.0	3.03e-32	IrrE N-terminal-like domain	N/A
Pfam	UHGV-0078695_14	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
COG	UHGV-0078695_14	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-0078695_14	PF06114,COG2856	N/A	N/A	N/A	N/A
KOfam	UHGV-0078695_15	K07727	49.2	0.00000000000015	K07727; putative transcriptional regulator	N/A
PHROG	UHGV-0078695_15	phrog_8	52.0	0.000000000000016	transcriptional regulator	transcription regulation
UniRef90	UHGV-0078695_15	UniRef90_A0A1Y4RLY2	131.0	1.7e-36	Transcriptional regulator	N/A
eggNOG-mapper	UHGV-0078695_15	318464.IO99_00425	84.0	1.16e-18	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0078695_15	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
COG	UHGV-0078695_15	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0078695_15	PF12844,NF041951,COG1396	N/A	N/A	N/A	N/A
UniRef90	UHGV-0078695_16	UniRef90_UPI001AA10A1A	87.0	4.49e-21	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0078695_16	1219626.HMPREF1639_07045	65.5	0.000000000000214	N/A	N/A
Pfam	UHGV-0078695_16	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0078695_16	PF05339,NF041951,COG1476	N/A	N/A	N/A	N/A
UniRef90	UHGV-0078695_17	UniRef90_A0A3A9F894	62.4	0.0000000000146	DNA-binding protein	N/A
PHROG	UHGV-0078695_22	phrog_3584	177.7	0	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0078695_22	UniRef90_A0A1I5LZL1	166.0	0	Relaxase/Mobilisation nuclease domain-containing protein	N/A
eggNOG-mapper	UHGV-0078695_22	1196322.A370_05744	184.0	0	N/A	N/A
structural_annotation	UHGV-0078695_22	PF21578	N/A	N/A	N/A	N/A
PHROG	UHGV-0078695_23	phrog_531	43.1	0.0000000000079	Rnase H	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0078695_23	UniRef90_F3AAS5	115.0	3.96e-30	RNase H type-1 domain-containing protein	N/A
eggNOG-mapper	UHGV-0078695_23	339671.Asuc_0876	60.8	0.0000000012	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids	N/A
COG	UHGV-0078695_23	COG0328	N/A	N/A	Ribonuclease HI	N/A
structural_annotation	UHGV-0078695_23	PF00075,MF_00042,NF001236,COG0328	N/A	N/A	N/A	N/A
KOfam	UHGV-0078695_25	K03111	132.4	5.6e-39	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0078695_25	phrog_44	137.7	8.00001e-41	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0078695_25	UniRef90_UPI001C0FB836	186.0	0	single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0078695_25	411459.RUMOBE_00993	183.0	0	N/A	N/A
Pfam	UHGV-0078695_25	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0078695_25	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0078695_25	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0078695_25	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0078695_25	PF00436,MF_00984,NF005580,COG0629	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0078695_26	411468.CLOSCI_00555	62.0	0.00000000319	N/A	N/A
PHROG	UHGV-0078695_27	phrog_7566	106.1	1.6e-31	N/A	unknown function
eggNOG-mapper	UHGV-0078695_27	411459.RUMOBE_00948	127.0	1.19e-36	N/A	N/A
PHROG	UHGV-0078695_28	phrog_15077	61.1	2.4e-17	N/A	unknown function
eggNOG-mapper	UHGV-0078695_28	742740.HMPREF9474_03494	83.2	8.51e-17	N/A	N/A
PHROG	UHGV-0078695_29	phrog_17690	96.6	1.8e-28	N/A	unknown function
UniRef90	UHGV-0078695_29	UniRef90_A0A6L5XWF4	80.5	6.15e-17	3-dehydroquinate synthase	N/A
eggNOG-mapper	UHGV-0078695_29	33035.JPJF01000107_gene432	94.4	4.08e-23	N/A	N/A
PHROG	UHGV-0078695_30	phrog_15198	40.8	0.000000000038	N/A	unknown function
UniRef90	UHGV-0078695_30	UniRef90_A0A1H4JD22	51.2	0.0000055	N/A	N/A
UniRef90	UHGV-0078695_31	UniRef90_UPI001594A542	162.0	0	N/A	N/A
eggNOG-mapper	UHGV-0078695_31	742733.HMPREF9469_00921	145.0	1.48005e-41	N/A	N/A
structural_annotation	UHGV-0078695_31	NF041588	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0078695_32	1519439.JPJG01000059_gene1909	58.5	0.0000000000577	N/A	N/A
PHROG	UHGV-0078695_33	phrog_36	69.3	7.4e-20	transcriptional regulator	transcription regulation
UniRef90	UHGV-0078695_33	UniRef90_A0A3A9DV07	120.0	1.84e-32	Sigma-70 family RNA polymerase sigma factor (Fragment)	N/A
eggNOG-mapper	UHGV-0078695_33	1232447.BAHW02000005_gene152	102.0	9.15e-26	N/A	N/A
structural_annotation	UHGV-0078695_33	PF07374,MF_00674,NF001074	N/A	N/A	N/A	N/A
UniRef90	UHGV-0078695_34	UniRef90_R6GFM0	108.0	6.17e-29	Conserved domain protein	N/A
structural_annotation	UHGV-0078695_34	PF19962	N/A	N/A	N/A	N/A
PHROG	UHGV-0078695_35	phrog_9	174.6	0	terminase large subunit	head and packaging
UniRef90	UHGV-0078695_35	UniRef90_UPI001D0087E2	793.0	0	terminase large subunit	N/A
eggNOG-mapper	UHGV-0078695_35	1123263.AUKY01000112_gene2060	665.0	0	phage terminase, large subunit	N/A
Pfam	UHGV-0078695_35	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-0078695_35	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0078695_35	PF20441,PF03354,MF_04146,NF033889,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0078695_36	phrog_104	226.3	0	portal protein	head and packaging
UniRef90	UHGV-0078695_36	UniRef90_A0A174L3Q9	783.0	0	Phage portal protein, SPP1 Gp6-like	N/A
eggNOG-mapper	UHGV-0078695_36	1123263.AUKY01000112_gene2059	556.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0078695_36	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0078695_36	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0078695_37	phrog_193	124.3	1.5e-36	head maturation protease	head and packaging
UniRef90	UHGV-0078695_37	UniRef90_A0A6N8H118	471.0	0	CdiA_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0078695_37	748224.HMPREF9436_01469	234.0	0	N/A	N/A
COG	UHGV-0078695_37	COG5529	N/A	N/A	Phage-encoded DNA-binding protein ECs1768, contains HTH and DnaT DNA-binding domains	N/A
PHROG	UHGV-0078695_38	phrog_918	95.5	2.8e-28	N/A	unknown function
UniRef90	UHGV-0078695_38	UniRef90_UPI00156D5D02	164.0	0	N/A	N/A
eggNOG-mapper	UHGV-0078695_38	537007.BLAHAN_05515	156.0	0	N/A	N/A
Pfam	UHGV-0078695_38	PF19791	N/A	N/A	N/A	DUF6275
structural_annotation	UHGV-0078695_38	PF19791	N/A	N/A	N/A	N/A
PHROG	UHGV-0078695_39	phrog_419	103.0	3.3e-30	N/A	unknown function
UniRef90	UHGV-0078695_39	UniRef90_A6MAI4	94.0	4.44e-23	Gp119	N/A
eggNOG-mapper	UHGV-0078695_39	388452.A6MAI4_9CAUD	94.0	7.45e-24	N/A	N/A
structural_annotation	UHGV-0078695_39	PF14083	N/A	N/A	N/A	N/A
PHROG	UHGV-0078695_40	phrog_1793	87.6	2.2e-25	head scaffolding protein	head and packaging
UniRef90	UHGV-0078695_40	UniRef90_A0A412EZF6	179.0	0	N/A	N/A
eggNOG-mapper	UHGV-0078695_40	1408304.JAHA01000007_gene1323	101.0	9.97e-26	N/A	N/A
Pfam	UHGV-0078695_40	PF14265	N/A	N/A	N/A	DUF4355
structural_annotation	UHGV-0078695_40	PF14265	N/A	N/A	N/A	N/A
PHROG	UHGV-0078695_41	phrog_10	110.1	2.6e-32	major head protein	head and packaging
UniRef90	UHGV-0078695_41	UniRef90_A0A844E6Z2	430.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0078695_41	205876.Q855V6_9CAUD	288.0	0	peptidase activity	N/A
Pfam	UHGV-0078695_41	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0078695_41	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
structural_annotation	UHGV-0078695_41	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0078695_43	phrog_137	66.4	3.8e-19	head-tail adaptor Ad1	connector
UniRef90	UHGV-0078695_43	UniRef90_E2ZGA8	119.0	3.01e-32	Phage protein Gp19/Gp15/Gp42	N/A
eggNOG-mapper	UHGV-0078695_43	1437603.BMON_1139	49.7	0.00000685	Phage protein Gp19/Gp15/Gp42	N/A
Pfam	UHGV-0078695_43	PF09355	N/A	N/A	N/A	Phage_Gp19
structural_annotation	UHGV-0078695_43	PF09355	N/A	N/A	N/A	N/A
PHROG	UHGV-0078695_44	phrog_501	96.0	3.1e-28	head closure Hc1	connector
eggNOG-mapper	UHGV-0078695_44	665950.HMPREF1025_02528	169.0	0	N/A	N/A
structural_annotation	UHGV-0078695_44	PF12206,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0078695_45	phrog_387	61.0	2e-17	neck protein	connector
UniRef90	UHGV-0078695_45	UniRef90_A0A380KNT4	67.8	0.000000000000303	N/A	N/A
eggNOG-mapper	UHGV-0078695_45	1423775.BAMN01000011_gene600	82.4	8.2e-20	N/A	N/A
PHROG	UHGV-0078695_46	phrog_123	63.0	5.7e-18	tail terminator	connector
eggNOG-mapper	UHGV-0078695_46	1280698.AUJS01000007_gene1043	129.0	2.93e-37	N/A	N/A
structural_annotation	UHGV-0078695_46	PF06141	N/A	N/A	N/A	N/A
PHROG	UHGV-0078695_47	phrog_117	166.1	0	major tail protein	tail
UniRef90	UHGV-0078695_47	UniRef90_A0A844E2C0	248.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-0078695_47	1280698.AUJS01000007_gene1044	228.0	0	domain, Protein	N/A
COG	UHGV-0078695_47	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0078695_47	PF04630,TIGR01603,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0078695_48	phrog_1526	78.8	5.9e-23	N/A	unknown function
eggNOG-mapper	UHGV-0078695_48	879308.HMPREF9130_1240	65.5	0.000000000000843	N/A	N/A
PHROG	UHGV-0078695_49	phrog_1633	131.6	3.3e-39	N/A	unknown function
UniRef90	UHGV-0078695_49	UniRef90_A0A4U9XLC7	107.0	9e-28	N/A	N/A
eggNOG-mapper	UHGV-0078695_49	873448.STRPO_0293	107.0	1.51e-28	N/A	N/A
Pfam	UHGV-0078695_49	PF17318	N/A	N/A	N/A	DUF5361
structural_annotation	UHGV-0078695_49	PF17318	N/A	N/A	N/A	N/A
PHROG	UHGV-0078695_50	phrog_6900	265.6	0	tail length tape measure protein	tail
UniRef90	UHGV-0078695_50	UniRef90_A0A316Q0J4	359.0	0	PblA	N/A
eggNOG-mapper	UHGV-0078695_50	12390.Q77MU4_9CAUD	330.0	0	peptidoglycan catabolic process	N/A
structural_annotation	UHGV-0078695_50	MF_04138,COG5281	N/A	N/A	N/A	N/A