UHGV-0079093 (vOTU-022259)

Viral Genome: UHGV-0079093

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0079093
vOTU ID	vOTU-022259
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_163101
Associated BioSample	SAMEA3136694
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	50.67 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	6
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9785
Virus hallmark genes (geNomad)	1
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	12.55
Jumbo phage	No

Genome content
Genome length (bp)	20,665
GC content	53.19%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	45
CDS density	88%
Average CDS length (bps)	404.00
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 50.67)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0079093_3	phrog_3754	111.7	5.6e-33	N/A	unknown function
eggNOG-mapper	UHGV-0079093_3	1226322.HMPREF1545_00073	167.0	0	N/A	N/A
PHROG	UHGV-0079093_4	phrog_21718	112.1	4e-33	N/A	unknown function
eggNOG-mapper	UHGV-0079093_4	397290.C810_05210	71.6	0.000000000000137	N/A	N/A
PHROG	UHGV-0079093_5	phrog_22984	79.1	4.9e-23	N/A	unknown function
PHROG	UHGV-0079093_6	phrog_16490	134.8	8.99999e-40	N/A	unknown function
eggNOG-mapper	UHGV-0079093_6	1408437.JNJN01000043_gene803	159.0	1.4013e-45	N/A	N/A
PHROG	UHGV-0079093_7	phrog_20016	178.1	0	N/A	unknown function
UniRef90	UHGV-0079093_7	UniRef90_A0A285PT46	194.0	0	Tumour necrosis factor-like domain	N/A
eggNOG-mapper	UHGV-0079093_7	397290.C810_05214	159.0	0	N/A	N/A
structural_annotation	UHGV-0079093_7	PF18573,NF033147	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0079093_8	PF12510	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0079093_9	1232443.BAIA02000078_gene6	58.9	0.0000000012	N/A	N/A
KOfam	UHGV-0079093_10	K14059	168.6	0	int; integrase	N/A
PHROG	UHGV-0079093_10	phrog_1	172.0	0	integrase	integration and excision
UniRef90	UHGV-0079093_10	UniRef90_A0A810Q0L1	655.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-0079093_10	445972.ANACOL_01797	290.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0079093_10	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0079093_10	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0079093_10	PF00589,MF_01807,TIGR02224,COG4973	N/A	N/A	N/A	N/A
UniRef90	UHGV-0079093_11	UniRef90_A0A810PZB1	340.0	0	HTH cro/C1-type domain-containing protein	N/A
Pfam	UHGV-0079093_11	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0079093_11	PF13443,TIGR03070,COG3655	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0079093_14	PF03885	N/A	N/A	N/A	N/A
PHROG	UHGV-0079093_15	phrog_8	41.1	0.000000000037	transcriptional regulator	transcription regulation
UniRef90	UHGV-0079093_15	UniRef90_A0A810Q1T1	112.0	1.45e-29	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0079093_15	411459.RUMOBE_00961	57.0	0.0000000128	Bacteriophage CI repressor helix-turn-helix domain	N/A
Pfam	UHGV-0079093_15	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0079093_15	COG3093	N/A	N/A	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	N/A
structural_annotation	UHGV-0079093_15	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0079093_16	phrog_8	41.6	0.000000000026	transcriptional regulator	transcription regulation
UniRef90	UHGV-0079093_16	UniRef90_A0A328UFC2	69.3	0.0000000000000446	HTH cro/C1-type domain-containing protein	N/A
Pfam	UHGV-0079093_16	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0079093_16	COG3093	N/A	N/A	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	N/A
structural_annotation	UHGV-0079093_16	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
UniRef90	UHGV-0079093_17	UniRef90_A0A8D9PDM8	88.2	1.13e-21	Pyocin activator protein	N/A
structural_annotation	UHGV-0079093_17	PF11112,COG3311	N/A	N/A	N/A	N/A
PHROG	UHGV-0079093_21	phrog_253	85.1	1e-24	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0079093_21	UniRef90_A0A8D9PDS3	314.0	0	Resistance protein	N/A
eggNOG-mapper	UHGV-0079093_21	748224.HMPREF9436_03356	110.0	1.45e-28	Siphovirus Gp157	N/A
Pfam	UHGV-0079093_21	PF05565	N/A	N/A	Siphovirus Gp157	Sipho_Gp157
structural_annotation	UHGV-0079093_21	PF05565	N/A	N/A	N/A	N/A
PHROG	UHGV-0079093_22	phrog_7838	146.2	1.59748e-43	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0079093_22	UniRef90_A0A8D9UGW3	427.0	0	DNA repair protein RAD52-like protein	N/A
eggNOG-mapper	UHGV-0079093_22	742767.HMPREF9456_02052	188.0	0	N/A	N/A
structural_annotation	UHGV-0079093_22	PF04098,TIGR00607,COG4380	N/A	N/A	N/A	N/A
PHROG	UHGV-0079093_23	phrog_72	52.1	0.0000000000000024	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0079093_23	UniRef90_A0A8D9PDS2	281.0	0	NinB protein	N/A
eggNOG-mapper	UHGV-0079093_23	445972.ANACOL_01825	148.0	5.8294e-43	N/A	N/A
structural_annotation	UHGV-0079093_23	PF05772	N/A	N/A	N/A	N/A
KOfam	UHGV-0079093_25	K03111	121.4	1.2e-35	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0079093_25	phrog_44	126.1	2.8e-37	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0079093_25	UniRef90_A0A810PUK9	217.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0079093_25	1203606.HMPREF1526_01880	115.0	3.54e-31	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-0079093_25	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0079093_25	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0079093_25	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0079093_25	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0079093_25	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0079093_26	phrog_15768	89.5	5.1e-26	N/A	unknown function
UniRef90	UHGV-0079093_26	UniRef90_A0A417QFV0	144.0	3.75e-39	Transcriptional regulator	N/A
eggNOG-mapper	UHGV-0079093_26	203119.Cthe_2466	162.0	1.4013e-45	N/A	N/A
structural_annotation	UHGV-0079093_26	PF01475,MF_01819,NF006999,COG0735	N/A	N/A	N/A	N/A
KOfam	UHGV-0079093_27	K02315	123.7	2.1e-36	dnaC; DNA replication protein DnaC	N/A
PHROG	UHGV-0079093_27	phrog_50	122.1	6.3e-36	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0079093_27	UniRef90_A0A810Q3X8	437.0	0	IstB_IS21 domain-containing protein	N/A
eggNOG-mapper	UHGV-0079093_27	445972.ANACOL_01829	187.0	0	N/A	N/A
Pfam	UHGV-0079093_27	PF01695	N/A	N/A	IstB-like ATP binding protein	IstB_IS21
COG	UHGV-0079093_27	COG1484	N/A	N/A	DNA replication protein DnaC	N/A
structural_annotation	UHGV-0079093_27	PF01695,MF_01158,NF005378,COG1484	N/A	N/A	N/A	N/A
PHROG	UHGV-0079093_28	phrog_16528	81.9	1.8e-24	DNA methyltransferase	other
UniRef90	UHGV-0079093_28	UniRef90_A0A6N9PX21	220.0	0	DNA (cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-0079093_28	657322.FPR_26610	203.0	0	DNA (cytosine-5-)-methyltransferase activity	N/A
PADLOC	UHGV-0079093_28	oMTase_00004	40.0	1.9e-33	orphan methyltransferase	RM
Pfam	UHGV-0079093_28	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
COG	UHGV-0079093_28	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0079093_29	TIGR00122,COG1654	N/A	N/A	N/A	N/A
PHROG	UHGV-0079093_30	phrog_9298	337.0	0	radical SAM domain protein	other
UniRef90	UHGV-0079093_30	UniRef90_UPI001C3BADA7	439.0	0	Radical SAM protein	N/A
eggNOG-mapper	UHGV-0079093_30	1235797.C816_00412	452.0	0	N/A	N/A
COG	UHGV-0079093_30	COG1032	N/A	N/A	Radical SAM superfamily enzyme YgiQ, UPF0313 family	N/A
structural_annotation	UHGV-0079093_30	MF_01865,NF010916,COG0621	N/A	N/A	N/A	N/A
KOfam	UHGV-0079093_32	K01160	69.9	6.8e-20	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0079093_32	phrog_34	62.1	1.2e-17	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0079093_32	UniRef90_UPI0018ABA1B6	164.0	0	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0079093_32	561177.ANHYDRO_01396	112.0	3.97e-30	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-0079093_32	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0079093_32	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0079093_32	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
KOfam	UHGV-0079093_34	K22300	54.7	0.0000000000000026	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0079093_34	phrog_8	40.4	0.000000000057	transcriptional regulator	transcription regulation
UniRef90	UHGV-0079093_34	UniRef90_UPI001D0C2D23	51.6	0.00000133	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0079093_34	160492.XF_0696	56.2	0.000000017	Helix-turn-helix domain	N/A
Pfam	UHGV-0079093_34	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0079093_34	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0079093_34	PF13443,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0079093_35	phrog_22529	115.8	2.1e-34	N/A	unknown function
UniRef90	UHGV-0079093_35	UniRef90_A0A810Q1V0	174.0	0	3D domain-containing protein	N/A
eggNOG-mapper	UHGV-0079093_35	658088.HMPREF0987_02675	103.0	5.37e-24	peptidase	N/A
Pfam	UHGV-0079093_35	PF06725	N/A	N/A	3D domain	3D
COG	UHGV-0079093_35	COG3584	N/A	N/A	3D (Asp-Asp-Asp) domain, usually in lytic transglycosylases	N/A
structural_annotation	UHGV-0079093_35	PF06725,NF040670,COG3584	N/A	N/A	N/A	N/A
PHROG	UHGV-0079093_36	phrog_38832	45.2	0.00000000000057	N/A	unknown function
eggNOG-mapper	UHGV-0079093_36	665956.HMPREF1032_03087	52.0	0.00000261	N/A	N/A
PHROG	UHGV-0079093_37	phrog_3136	139.2	1.40004e-41	N/A	unknown function
UniRef90	UHGV-0079093_37	UniRef90_A0A3D0HBD2	149.0	1.19951e-42	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-0079093_37	642492.Clole_1416	59.7	0.00000000368	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	N/A
COG	UHGV-0079093_37	COG4933	N/A	N/A	Predicted transcriptional regulator, contains an HTH and PUA-like domains	N/A
structural_annotation	UHGV-0079093_37	PF08819,MF_00684,NF008917,COG4933	N/A	N/A	N/A	N/A
PHROG	UHGV-0079093_41	phrog_18716	185.6	0	N/A	unknown function
UniRef90	UHGV-0079093_41	UniRef90_R6RP50	199.0	0	N/A	N/A
eggNOG-mapper	UHGV-0079093_41	575540.Isop_2447	117.0	1.96e-32	N/A	N/A
Pfam	UHGV-0079093_41	PF18909	N/A	N/A	dATP/dGTP diphosphohydrolase, N-terminal	dGTP_diPhyd_N
structural_annotation	UHGV-0079093_41	PF18909	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0079093_44	693746.OBV_18010	124.0	3.82e-34	N/A	N/A
structural_annotation	UHGV-0079093_44	TIGR01636	N/A	N/A	N/A	N/A