UHGV-0079287 (vOTU-082747)

Viral Genome: UHGV-0079287

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0079287
vOTU ID	vOTU-082747
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_150642
Associated BioSample	SAMEA2784461
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.9 (High-quality)
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9776
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	41.52
Jumbo phage	No

Genome content
Genome length (bp)	35,842
GC content	55.72%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	49
CDS density	92%
Average CDS length (bps)	674.33
Total tRNA genes	1
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0079287_1	K06400	275.4	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0079287_1	phrog_95	285.7	0	integrase	integration and excision
UniRef90	UHGV-0079287_1	UniRef90_A0A417HSQ2	374.0	0	Recombinase family protein	N/A
eggNOG-mapper	UHGV-0079287_1	1356854.N007_18555	187.0	0	Recombinase	N/A
Pfam	UHGV-0079287_1	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0079287_1	PF07508	N/A	N/A	Recombinase	Recombinase
COG	UHGV-0079287_1	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0079287_1	PF00239,PF07508,NF041201,COG1961	N/A	N/A	N/A	N/A
UniRef90	UHGV-0079287_4	UniRef90_A0A4R1QMH6	87.0	3.93e-21	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0079287_4	445972.ANACOL_00210	101.0	1.03e-27	N/A	N/A
Pfam	UHGV-0079287_4	PF13412	N/A	N/A	Winged helix-turn-helix DNA-binding	HTH_24
structural_annotation	UHGV-0079287_4	PF13560,TIGR02612,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0079287_5	phrog_1129	62.4	5.7e-18	holin	lysis
UniRef90	UHGV-0079287_5	UniRef90_UPI000D5536F3	106.0	4.56e-28	phage holin family protein	N/A
eggNOG-mapper	UHGV-0079287_5	742740.HMPREF9474_03522	104.0	2.21e-28	N/A	N/A
Pfam	UHGV-0079287_5	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0079287_5	PF06946	N/A	N/A	N/A	N/A
PHROG	UHGV-0079287_6	phrog_4105	83.0	3e-24	N/A	unknown function
eggNOG-mapper	UHGV-0079287_6	592026.GCWU0000282_003290	87.8	3.48e-21	N/A	N/A
KOfam	UHGV-0079287_7	K01447	75.5	1e-21	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0079287_7	phrog_1794	157.7	0	amidase	lysis
UniRef90	UHGV-0079287_7	UniRef90_R5AZE6	276.0	0	N-acetylmuramoyl-L-alanine amidase family 2	N/A
eggNOG-mapper	UHGV-0079287_7	1235793.C809_04545	231.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-0079287_7	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
COG	UHGV-0079287_7	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0079287_7	PF01510,MF_04111,NF008758,COG5632	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0079287_8	PF20622,NF033814	N/A	N/A	N/A	N/A
COG	UHGV-0079287_9	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0079287_9	PF00629,NF033675	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0079287_10	411473.RUMCAL_00420	71.6	0.000000000597	nuclear chromosome segregation	N/A
COG	UHGV-0079287_10	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
PHROG	UHGV-0079287_11	phrog_6616	66.9	4.3e-20	tail protein	tail
structural_annotation	UHGV-0079287_11	PF13550,PF16466,NF033848,COG3500	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0079287_12	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0079287_13	phrog_1535	124.4	0	tail length tape measure protein	tail
UniRef90	UHGV-0079287_13	UniRef90_A0A810PX76	117.0	9.67e-24	Phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-0079287_13	1449050.JNLE01000003_gene3881	135.0	3.52e-30	domain protein	N/A
COG	UHGV-0079287_13	COG1511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0079287_13	PF16789,TIGR02473	N/A	N/A	N/A	N/A
PHROG	UHGV-0079287_14	phrog_706	109.3	3.5e-32	N/A	unknown function
UniRef90	UHGV-0079287_14	UniRef90_UPI00164D7633	177.0	0	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-0079287_14	693746.OBV_18170	170.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0079287_14	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0079287_14	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0079287_15	phrog_11299	100.8	1.4e-29	N/A	unknown function
eggNOG-mapper	UHGV-0079287_15	1449050.JNLE01000003_gene3883	70.9	0.00000000000017	N/A	N/A
structural_annotation	UHGV-0079287_15	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-0079287_16	phrog_3099	89.1	5.8e-26	N/A	unknown function
eggNOG-mapper	UHGV-0079287_16	693746.OBV_18150	223.0	0	N/A	N/A
structural_annotation	UHGV-0079287_16	PF10772,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0079287_17	phrog_3266	61.7	1.1e-17	tail completion	connector
eggNOG-mapper	UHGV-0079287_17	476272.RUMHYD_01781	120.0	1.92e-32	N/A	N/A
structural_annotation	UHGV-0079287_17	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-0079287_18	phrog_556	62.5	4e-18	minor head protein	head and packaging
UniRef90	UHGV-0079287_18	UniRef90_A0A1H7MNM8	142.0	1.63e-40	Minor capsid protein	N/A
eggNOG-mapper	UHGV-0079287_18	33035.JPJF01000106_gene3128	86.3	2.77e-19	N/A	N/A
Pfam	UHGV-0079287_18	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-0079287_18	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-0079287_19	phrog_3366	50.4	0.000000000000043	N/A	unknown function
structural_annotation	UHGV-0079287_19	PF20536,TIGR01563	N/A	N/A	N/A	N/A
PHROG	UHGV-0079287_20	phrog_541	66.1	5.4e-19	head-tail adaptor	connector
eggNOG-mapper	UHGV-0079287_20	476272.RUMHYD_01778	75.5	0.00000000000000398	N/A	N/A
PHROG	UHGV-0079287_21	phrog_267	50.6	0.000000000000028	major head protein	head and packaging
eggNOG-mapper	UHGV-0079287_21	1235799.C818_04223	155.0	6.54406e-43	N/A	N/A
structural_annotation	UHGV-0079287_21	PF11651,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0079287_22	phrog_194	44.6	0.0000000000027	head scaffolding protein	head and packaging
UniRef90	UHGV-0079287_22	UniRef90_UPI001C0EBA51	127.0	3.38e-33	phage scaffolding protein	N/A
eggNOG-mapper	UHGV-0079287_22	1539298.JO41_08210	63.2	0.000000000913	Phage minor structural protein GP20	N/A
Pfam	UHGV-0079287_22	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-0079287_22	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-0079287_23	phrog_15041	48.0	0.00000000000018	N/A	unknown function
PHROG	UHGV-0079287_24	phrog_581	247.6	0	minor head protein	head and packaging
UniRef90	UHGV-0079287_24	UniRef90_A0A355KVT5	340.0	0	Phage capsid protein (Fragment)	N/A
eggNOG-mapper	UHGV-0079287_24	476272.RUMHYD_01761	223.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-0079287_24	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0079287_24	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0079287_24	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-0079287_25	phrog_533	216.6	0	portal protein	head and packaging
UniRef90	UHGV-0079287_25	UniRef90_A0A173TY48	347.0	0	Phage portal protein, putative, A118 family	N/A
eggNOG-mapper	UHGV-0079287_25	33035.JPJF01000106_gene3135	328.0	0	phage minor capsid protein	N/A
structural_annotation	UHGV-0079287_25	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-0079287_26	K06909	393.0	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0079287_26	phrog_5653	145.5	2.99878e-43	terminase large subunit	head and packaging
UniRef90	UHGV-0079287_26	UniRef90_A0A416S378	636.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0079287_26	33035.JPJF01000106_gene3136	598.0	0	Terminase small subunit	N/A
Pfam	UHGV-0079287_26	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
Pfam	UHGV-0079287_26	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-0079287_26	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-0079287_26	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0079287_26	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0079287_26	PF04466,PF17288,PF03592,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0079287_27	PF10922,MF_00839	N/A	N/A	N/A	N/A
PHROG	UHGV-0079287_28	phrog_36	57.3	3.6e-16	transcriptional regulator	transcription regulation
eggNOG-mapper	UHGV-0079287_28	428125.CLOLEP_01806	100.0	5.78e-25	N/A	N/A
Pfam	UHGV-0079287_28	PF07374	N/A	N/A	N/A	DUF1492
structural_annotation	UHGV-0079287_28	PF07374,TIGR01636	N/A	N/A	N/A	N/A
PHROG	UHGV-0079287_30	phrog_3136	118.3	2.4e-35	N/A	unknown function
UniRef90	UHGV-0079287_30	UniRef90_UPI001C26B029	123.0	9.6e-32	ASCH domain-containing protein	N/A
COG	UHGV-0079287_30	COG4933	N/A	N/A	Predicted transcriptional regulator, contains an HTH and PUA-like domains	N/A
structural_annotation	UHGV-0079287_30	PF08819,MF_00684,NF008917,COG4933	N/A	N/A	N/A	N/A
PHROG	UHGV-0079287_31	phrog_5781	68.6	8.6e-20	N/A	unknown function
UniRef90	UHGV-0079287_31	UniRef90_A0A7X1I9F3	96.3	1.42e-21	N/A	N/A
eggNOG-mapper	UHGV-0079287_31	573061.Clocel_3558	79.3	7.85e-17	N/A	N/A
Pfam	UHGV-0079287_31	PF14359	N/A	N/A	N/A	DUF4406
COG	UHGV-0079287_31	COG3613	N/A	N/A	Nucleoside 2-deoxyribosyltransferase	N/A
structural_annotation	UHGV-0079287_31	PF14359,MF_03036,TIGR03646,COG3613	N/A	N/A	N/A	N/A
PHROG	UHGV-0079287_32	phrog_1029	227.8	0	N/A	unknown function
eggNOG-mapper	UHGV-0079287_32	1203606.HMPREF1526_01890	375.0	0	N/A	N/A
structural_annotation	UHGV-0079287_32	PF10065,COG5532	N/A	N/A	N/A	N/A
PHROG	UHGV-0079287_33	phrog_997	118.8	3.6e-35	replication terminator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0079287_33	UniRef90_R6MCS9	108.0	4.42e-28	N/A	N/A
eggNOG-mapper	UHGV-0079287_33	1519439.JPJG01000059_gene1910	176.0	0	N/A	N/A
KOfam	UHGV-0079287_34	K00558	225.3	0	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-0079287_34	phrog_116	259.9	0	DNA methyltransferase	other
UniRef90	UHGV-0079287_34	UniRef90_A0A350THX9	729.0	0	DNA (cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-0079287_34	1121334.KB911073_gene1852	605.0	0	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	N/A
PADLOC	UHGV-0079287_34	MTase_II_00020	97.8	2.9e-31	Type II methyltransferase	RM
Pfam	UHGV-0079287_34	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
COG	UHGV-0079287_34	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0079287_34	PF00145,MF_00351,TIGR00675,COG0270	N/A	N/A	N/A	N/A
KOfam	UHGV-0079287_35	K03700	84.1	2.1e-24	recU; recombination protein U	N/A
PHROG	UHGV-0079287_35	phrog_843	132.5	1.7e-39	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0079287_35	UniRef90_A0A1H0W5Y9	166.0	0	Holliday junction resolvase RecU	N/A
eggNOG-mapper	UHGV-0079287_35	1203606.HMPREF1526_01884	148.0	8.61939e-42	Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation	N/A
Pfam	UHGV-0079287_35	PF03838	N/A	N/A	Recombination protein U	RecU
COG	UHGV-0079287_35	COG3331	N/A	N/A	Penicillin-binding protein-related factor A, putative recombinase	N/A
structural_annotation	UHGV-0079287_35	PF03838,MF_00130,NF002581,COG3331	N/A	N/A	N/A	N/A
PHROG	UHGV-0079287_36	phrog_3584	130.1	1.9e-38	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0079287_36	411470.RUMGNA_02047	139.0	1.05e-36	N/A	N/A
structural_annotation	UHGV-0079287_36	PF21578	N/A	N/A	N/A	N/A
KOfam	UHGV-0079287_39	K06284	120.7	8.1e-36	abrB; AbrB family transcriptional regulator, transcriptional pleiotropic regulator of transition state genes	N/A
PHROG	UHGV-0079287_39	phrog_4681	104.4	4.3e-31	antitoxin from a toxin-antitoxin system	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0079287_39	UniRef90_UPI000374C2E3	111.0	3.36e-30	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	N/A
eggNOG-mapper	UHGV-0079287_39	1157490.EL26_11905	109.0	1.99e-30	Antidote-toxin recognition MazE, bacterial antitoxin	N/A
Pfam	UHGV-0079287_39	PF04014	N/A	N/A	Antidote-toxin recognition MazE, bacterial antitoxin	MazE_antitoxin
NCBIFam	UHGV-0079287_39	TIGR01439.1	N/A	N/A	transcriptional regulator, AbrB family	N/A
COG	UHGV-0079287_39	COG2002	N/A	N/A	Bifunctional DNA-binding transcriptional regulator of stationary/sporulation/toxin gene expression and antitoxin component of the YhaV-PrlF toxin-antitoxin module	N/A
structural_annotation	UHGV-0079287_39	PF15937,TIGR01439,NF004424,COG2002	N/A	N/A	N/A	N/A
PHROG	UHGV-0079287_42	phrog_3	40.2	0.00000000014	transcriptional repressor	transcription regulation
Pfam	UHGV-0079287_42	PF13560	N/A	N/A	Helix-turn-helix domain	HTH_31
structural_annotation	UHGV-0079287_42	PF05339,NF002773,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0079287_43	phrog_8	56.7	5.6e-16	transcriptional regulator	transcription regulation
UniRef90	UHGV-0079287_43	UniRef90_A0A354M9E0	103.0	1e-25	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0079287_43	658659.HMPREF0983_03304	84.3	2.95e-19	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0079287_43	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
COG	UHGV-0079287_43	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0079287_43	PF13560,MF_00535,NF007257,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-0079287_44	phrog_1914	101.6	3.4e-30	N/A	unknown function
UniRef90	UHGV-0079287_44	UniRef90_R6DVV5	238.0	0	Predicted Zn peptidase	N/A
eggNOG-mapper	UHGV-0079287_44	1160721.RBI_I01604	141.0	5.31e-40	N/A	N/A
Pfam	UHGV-0079287_44	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
COG	UHGV-0079287_44	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-0079287_44	PF06114,COG2856	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0079287_45	PF18768,MF_02066,NF011886,COG5010	N/A	N/A	N/A	N/A
PHROG	UHGV-0079287_46	phrog_4611	62.7	4.3e-18	minor head protein	head and packaging
UniRef90	UHGV-0079287_46	UniRef90_UPI001EDE047F	157.0	1.32002e-41	phage minor capsid protein	N/A
eggNOG-mapper	UHGV-0079287_46	679192.HMPREF9013_1325	81.6	0.00000000000000236	N/A	N/A
Pfam	UHGV-0079287_46	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
structural_annotation	UHGV-0079287_47	PF21227	N/A	N/A	N/A	N/A
PHROG	UHGV-0079287_48	phrog_33519	141.3	4.90034e-42	N/A	unknown function
eggNOG-mapper	UHGV-0079287_48	97139.C824_02721	103.0	6.18e-26	N/A	N/A
structural_annotation	UHGV-0079287_48	PF13958,NF010262,COG2337	N/A	N/A	N/A	N/A
KOfam	UHGV-0079287_49	K14059	167.2	0	int; integrase	N/A
PHROG	UHGV-0079287_49	phrog_1	140.1	2.09999e-41	integrase	integration and excision
UniRef90	UHGV-0079287_49	UniRef90_UPI00195778D3	138.0	8.69e-35	site-specific integrase	N/A
eggNOG-mapper	UHGV-0079287_49	1235798.C817_02625	83.6	0.00000000000000185	Arm DNA-binding domain	N/A
Pfam	UHGV-0079287_49	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
COG	UHGV-0079287_49	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0079287_49	PF00589,PF02899,MF_01808,TIGR02225,COG4973	N/A	N/A	N/A	N/A