UHGV-0080003 (vOTU-081150)

Viral Genome: UHGV-0080003

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0080003
vOTU ID	vOTU-081150
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_141982
Associated BioSample	SAMEA2737682
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.84 (High-quality)
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9808
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	25.48
Jumbo phage	No

Genome content
Genome length (bp)	41,647
GC content	45.94%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	60
CDS density	94%
Average CDS length (bps)	654.60
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 99.84)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0080003_1	phrog_22978	107.1	0	N/A	unknown function
eggNOG-mapper	UHGV-0080003_1	1226322.HMPREF1545_00787	87.4	0.0000000000000504	N/A	N/A
KOfam	UHGV-0080003_2	K12943	56.8	2.8e-16	ygeR; lipoprotein YgeR	N/A
PHROG	UHGV-0080003_2	phrog_4602	51.6	0.000000000000023	transglycosylase	other
eggNOG-mapper	UHGV-0080003_2	1410650.JHWL01000003_gene2815	110.0	9.4e-24	N/A	N/A
Pfam	UHGV-0080003_2	PF01476	N/A	N/A	LysM domain	LysM
PHROG	UHGV-0080003_3	phrog_18190	44.0	0.0000000000015	N/A	unknown function
COG	UHGV-0080003_3	COG4733	N/A	N/A	Phage-related protein, tail protein J	N/A
PHROG	UHGV-0080003_4	phrog_511	232.0	0	internal virion protein	head and packaging
eggNOG-mapper	UHGV-0080003_4	1321782.HMPREF1986_00351	362.0	0	N/A	N/A
structural_annotation	UHGV-0080003_4	PF11134,TIGR03300,NF038126,COG1520	N/A	N/A	N/A	N/A
PHROG	UHGV-0080003_5	phrog_12105	118.3	4.3e-35	N/A	unknown function
eggNOG-mapper	UHGV-0080003_5	1226322.HMPREF1545_03850	51.2	0.00000198	N/A	N/A
eggNOG-mapper	UHGV-0080003_6	476272.RUMHYD_00002	158.0	2.51e-38	N/A	N/A
eggNOG-mapper	UHGV-0080003_7	411470.RUMGNA_02214	78.6	5.75e-18	N/A	N/A
structural_annotation	UHGV-0080003_7	PF08948,MF_01537,NF007541,COG3123	N/A	N/A	N/A	N/A
PHROG	UHGV-0080003_8	phrog_20274	153.1	1.4013e-45	N/A	unknown function
UniRef90	UHGV-0080003_8	UniRef90_A0A174MAK4	199.0	0	Membrane protein	N/A
eggNOG-mapper	UHGV-0080003_8	411902.CLOBOL_05645	197.0	0	N/A	N/A
Pfam	UHGV-0080003_8	PF06541	N/A	N/A	Putative ABC-transporter type IV	ABC_trans_CmpB
COG	UHGV-0080003_8	COG4905	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0080003_8	PF06541,COG4905	N/A	N/A	N/A	N/A
PHROG	UHGV-0080003_9	phrog_1348	40.0	0.000000000053	tail fiber protein	tail
UniRef90	UHGV-0080003_9	UniRef90_UPI001BC63046	335.0	0	Acyl carrier protein	N/A
eggNOG-mapper	UHGV-0080003_9	411902.CLOBOL_05646	161.0	0	N/A	N/A
structural_annotation	UHGV-0080003_9	PF14301	N/A	N/A	N/A	N/A
KOfam	UHGV-0080003_10	K19721	62.5	2.3e-18	COL5AS; collagen type V/XI/XXIV/XXVII, alpha	N/A
PHROG	UHGV-0080003_10	phrog_25888	100.1	2.29999e-40	N/A	unknown function
Pfam	UHGV-0080003_10	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
PHROG	UHGV-0080003_12	phrog_1357	259.4	0	major head protein	head and packaging
UniRef90	UHGV-0080003_12	UniRef90_A0A3E2WGW1	345.0	0	N4-gp56 family major capsid protein	N/A
eggNOG-mapper	UHGV-0080003_12	748224.HMPREF9436_02545	318.0	0	N/A	N/A
Pfam	UHGV-0080003_12	PF13252	N/A	N/A	N/A	DUF4043
NCBIFam	UHGV-0080003_12	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-0080003_12	PF13252,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0080003_13	phrog_13908	219.1	0	N/A	unknown function
eggNOG-mapper	UHGV-0080003_13	1410650.JHWL01000003_gene2831	130.0	5.28e-33	N/A	N/A
KOfam	UHGV-0080003_14	K07584	49.9	0.000000000000067	N/A	N/A
PHROG	UHGV-0080003_14	phrog_4478	57.3	2.5e-16	peptidase	other
UniRef90	UHGV-0080003_14	UniRef90_UPI00102FFAFD	52.8	0.000000665	ribosomal-processing cysteine protease Prp	N/A
Pfam	UHGV-0080003_14	PF04327	N/A	N/A	Cysteine protease Prp	Peptidase_Prp
COG	UHGV-0080003_14	COG2868	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0080003_14	PF04327,NF011124,COG2868	N/A	N/A	N/A	N/A
PHROG	UHGV-0080003_15	phrog_156	312.8	0	portal protein	head and packaging
eggNOG-mapper	UHGV-0080003_15	748224.HMPREF9436_01396	489.0	0	N/A	N/A
structural_annotation	UHGV-0080003_15	PF16510,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-0080003_16	K06909	93.0	4e-27	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0080003_16	phrog_979	207.9	0	terminase large subunit	head and packaging
UniRef90	UHGV-0080003_16	UniRef90_A0A316SB77	635.0	0	Terminase-like family protein	N/A
eggNOG-mapper	UHGV-0080003_16	748224.HMPREF9436_01395	639.0	0	Terminase-like family	N/A
Pfam	UHGV-0080003_16	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-0080003_16	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0080003_16	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
KOfam	UHGV-0080003_17	K07474	74.7	2.1e-21	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-0080003_17	phrog_2606	138.2	0	terminase small subunit	head and packaging
UniRef90	UHGV-0080003_17	UniRef90_UPI0018AAB08F	144.0	7.33e-38	terminase small subunit	N/A
eggNOG-mapper	UHGV-0080003_17	411490.ANACAC_00784	124.0	4.31e-31	terminase, small subunit	N/A
Pfam	UHGV-0080003_17	PF10668	N/A	N/A	Phage terminase small subunit	Phage_terminase
Pfam	UHGV-0080003_17	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-0080003_17	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
PHROG	UHGV-0080003_19	phrog_13890	58.6	8.5e-17	N/A	unknown function
UniRef90	UHGV-0080003_19	UniRef90_S0JNN4	68.9	0.000000000000039	Arc domain-containing protein	N/A
eggNOG-mapper	UHGV-0080003_19	1235790.C805_00066	68.9	0.00000000000000654	N/A	N/A
structural_annotation	UHGV-0080003_19	PF10723,NF010256,COG4710	N/A	N/A	N/A	N/A
UniRef90	UHGV-0080003_21	UniRef90_S2ZLJ4	90.5	3.75e-21	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0080003_21	411470.RUMGNA_03786	92.0	2.3e-22	Helix-turn-helix XRE-family like proteins	N/A
COG	UHGV-0080003_21	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
PHROG	UHGV-0080003_25	phrog_874	189.8	0	N/A	unknown function
UniRef90	UHGV-0080003_25	UniRef90_A0A4P6LRJ9	193.0	0	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-0080003_25	411468.CLOSCI_00298	189.0	0	N/A	N/A
structural_annotation	UHGV-0080003_25	PF04266,MF_00684,NF003443,COG4043	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0080003_28	1232453.BAIF02000057_gene1147	63.9	0.0000000000122	N/A	N/A
PHROG	UHGV-0080003_29	phrog_757	124.8	6e-37	DNA methyltransferase	other
UniRef90	UHGV-0080003_29	UniRef90_A0A3A6EPW1	213.0	0	DNA cytosine methyltransferase	N/A
eggNOG-mapper	UHGV-0080003_29	397290.C810_01487	164.0	0	DNA (cytosine-5-)-methyltransferase activity	N/A
COG	UHGV-0080003_29	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
PHROG	UHGV-0080003_30	phrog_757	48.4	0.00000000000015	DNA methyltransferase	other
UniRef90	UHGV-0080003_30	UniRef90_A0A7J2R6L5	67.8	0.0000000000000427	DNA cytosine methyltransferase (Fragment)	N/A
eggNOG-mapper	UHGV-0080003_30	748224.HMPREF9436_03069	98.6	4.19e-25	DNA (cytosine-5-)-methyltransferase activity	N/A
COG	UHGV-0080003_30	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
PHROG	UHGV-0080003_31	phrog_5781	85.6	6.9e-25	N/A	unknown function
UniRef90	UHGV-0080003_31	UniRef90_UPI001BBBA8BA	144.0	3.33509e-43	N/A	N/A
eggNOG-mapper	UHGV-0080003_31	1125725.HMPREF1325_1838	77.0	3.77e-17	N/A	N/A
Pfam	UHGV-0080003_31	PF14359	N/A	N/A	N/A	DUF4406
COG	UHGV-0080003_31	COG3613	N/A	N/A	Nucleoside 2-deoxyribosyltransferase	N/A
structural_annotation	UHGV-0080003_31	PF14359,MF_03036,TIGR02133,COG3613	N/A	N/A	N/A	N/A
UniRef90	UHGV-0080003_34	UniRef90_UPI001897C27C	92.8	1.26e-22	N/A	N/A
eggNOG-mapper	UHGV-0080003_34	665950.HMPREF1025_02540	74.3	0.00000000000000225	N/A	N/A
Pfam	UHGV-0080003_34	PF04448	N/A	N/A	N/A	DUF551
structural_annotation	UHGV-0080003_34	PF04448,NF041588	N/A	N/A	N/A	N/A
KOfam	UHGV-0080003_35	K03111	125.6	6.7e-37	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0080003_35	phrog_44	125.7	4.2e-37	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0080003_35	UniRef90_UPI001BC26013	203.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0080003_35	742723.HMPREF9477_01387	193.0	0	Single-strand binding protein family	N/A
Pfam	UHGV-0080003_35	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0080003_35	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0080003_35	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0080003_35	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0080003_35	PF00436,MF_00984,NF005580,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0080003_36	phrog_24368	56.2	5.2e-16	N/A	unknown function
eggNOG-mapper	UHGV-0080003_36	742740.HMPREF9474_04313	65.1	0.0000000000178	N/A	N/A
PHROG	UHGV-0080003_37	phrog_3584	171.3	0	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0080003_37	742740.HMPREF9474_04323	161.0	0	N/A	N/A
structural_annotation	UHGV-0080003_37	PF21578	N/A	N/A	N/A	N/A
PHROG	UHGV-0080003_42	phrog_7566	93.0	2e-27	N/A	unknown function
eggNOG-mapper	UHGV-0080003_42	742740.HMPREF9474_04319	83.6	2.99e-19	N/A	N/A
PHROG	UHGV-0080003_43	phrog_9958	148.5	2.66247e-44	N/A	unknown function
UniRef90	UHGV-0080003_43	UniRef90_UPI001D08A241	181.0	0	N/A	N/A
eggNOG-mapper	UHGV-0080003_43	1160721.RBI_I01591	106.0	1.03e-25	N/A	N/A
Pfam	UHGV-0080003_43	PF19789	N/A	N/A	N/A	DUF6273
KOfam	UHGV-0080003_44	K18830	62.2	1.4e-17	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-0080003_44	phrog_8	52.5	0.000000000000012	transcriptional regulator	transcription regulation
UniRef90	UHGV-0080003_44	UniRef90_A0A3R6JTC8	130.0	1.71e-36	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0080003_44	1095750.HMPREF9970_1686	117.0	2.5e-32	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0080003_44	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0080003_44	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0080003_44	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0080003_45	phrog_14556	51.4	0.000000000000014	N/A	unknown function
eggNOG-mapper	UHGV-0080003_45	556261.HMPREF0240_02539	71.2	0.000000000000171	translation initiation factor activity	N/A
COG	UHGV-0080003_45	COG3064	N/A	N/A	Membrane protein TolA involved in colicin uptake	N/A
PHROG	UHGV-0080003_48	phrog_26861	61.0	3e-24	N/A	unknown function
UniRef90	UHGV-0080003_48	UniRef90_UPI001D06FBDF	124.0	3.23e-32	single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0080003_48	1226325.HMPREF1548_02496	111.0	6.7e-28	PFAM single-strand binding protein	N/A
Pfam	UHGV-0080003_48	PF00436	N/A	N/A	Single-strand binding protein family	SSB
COG	UHGV-0080003_48	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0080003_48	PF00436,PF13567,MF_00984,NF004476,COG0629	N/A	N/A	N/A	N/A
Pfam	UHGV-0080003_49	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0080003_49	PF13560,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0080003_50	K06400	232.2	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0080003_50	phrog_95	245.5	0	integrase	integration and excision
UniRef90	UHGV-0080003_50	UniRef90_A0A1C5W233	451.0	0	Recombinase	N/A
eggNOG-mapper	UHGV-0080003_50	483218.BACPEC_01184	442.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-0080003_50	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0080003_50	PF07508	N/A	N/A	Recombinase	Recombinase
COG	UHGV-0080003_50	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0080003_50	PF07508,PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A
Pfam	UHGV-0080003_51	PF02915	N/A	N/A	Rubrerythrin	Rubrerythrin
KOfam	UHGV-0080003_55	K01185	155.2	0	E3.2.1.17; lysozyme [EC:3.2.1.17]	N/A
PHROG	UHGV-0080003_55	phrog_7	176.1	0	endolysin	lysis
UniRef90	UHGV-0080003_55	UniRef90_A0A843HJI5	160.0	0	Lysozyme	N/A
eggNOG-mapper	UHGV-0080003_55	397291.C804_01109	146.0	5.67e-39	Phage lysozyme	N/A
Pfam	UHGV-0080003_55	PF00959	N/A	N/A	Phage lysozyme	Phage_lysozyme
Pfam	UHGV-0080003_55	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-0080003_55	COG3584	N/A	N/A	3D (Asp-Asp-Asp) domain, usually in lytic transglycosylases	N/A
HAMAP	UHGV-0080003_55	MF_04110	N/A	N/A	Endolysin	N/A
structural_annotation	UHGV-0080003_55	PF01471,PF00959,MF_04110,COG3772,COG3409	N/A	N/A	N/A	N/A
PHROG	UHGV-0080003_56	phrog_443	61.5	2.2e-17	holin	lysis
UniRef90	UHGV-0080003_56	UniRef90_UPI001EE0823A	96.3	1.54e-24	holin	N/A
eggNOG-mapper	UHGV-0080003_56	626523.GCWU000342_01012	86.7	2.37e-21	Putative lactococcus lactis phage r1t holin	N/A
Pfam	UHGV-0080003_56	PF16945	N/A	N/A	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
structural_annotation	UHGV-0080003_56	PF16945	N/A	N/A	N/A	N/A
PHROG	UHGV-0080003_57	phrog_355	60.8	2.2e-17	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0080003_57	UniRef90_A0A396KGT7	209.0	0	N/A	N/A
eggNOG-mapper	UHGV-0080003_57	97138.C820_00250	130.0	7.1e-38	N/A	N/A
Pfam	UHGV-0080003_57	PF14359	N/A	N/A	N/A	DUF4406
structural_annotation	UHGV-0080003_57	PF14359,COG3613	N/A	N/A	N/A	N/A
PHROG	UHGV-0080003_58	phrog_1048	182.7	0	N/A	unknown function
UniRef90	UHGV-0080003_58	UniRef90_A0A396MNX1	310.0	0	N/A	N/A
eggNOG-mapper	UHGV-0080003_58	457412.RSAG_01107	304.0	0	N/A	N/A
Pfam	UHGV-0080003_58	PF11195	N/A	N/A	N/A	DUF2829
dbAPIS	UHGV-0080003_58	APIS029	N/A	N/A	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	N/A
structural_annotation	UHGV-0080003_58	PF11195	N/A	N/A	N/A	N/A
PHROG	UHGV-0080003_59	phrog_937	51.4	0.000000000000021	hemolysin	other
UniRef90	UHGV-0080003_59	UniRef90_R5GGW2	83.6	7.32e-19	Phosphoglucosamine mutase	N/A
eggNOG-mapper	UHGV-0080003_59	1235792.C808_00576	82.0	4.7e-19	N/A	N/A
PHROG	UHGV-0080003_60	phrog_22978	594.4	0	N/A	unknown function
UniRef90	UHGV-0080003_60	UniRef90_A0A396QCY9	427.0	0	MuF_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0080003_60	1410650.JHWL01000003_gene2814	409.0	0	N/A	N/A