UHGV-0080906 (vOTU-022702)

Viral Genome: UHGV-0080906

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0080906
vOTU ID	vOTU-022702
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_160752
Associated BioSample	SAMEA3136636
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	74.38 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9605
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	40.02
Jumbo phage	No

Genome content
Genome length (bp)	28,501
GC content	41.10%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	38
CDS density	87%
Average CDS length (bps)	652.26
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 74.38)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
Pfam	UHGV-0080906_2	PF02839	N/A	N/A	Carbohydrate-binding module family 5/12	CBM_5_12
PHROG	UHGV-0080906_3	phrog_4980	46.7	0.00000000000052	superinfection exclusion	moron, auxiliary metabolic gene and host takeover
eggNOG-mapper	UHGV-0080906_3	1235835.C814_03388	145.0	6.12e-40	N/A	N/A
KOfam	UHGV-0080906_7	K01160	56.2	0.000000000000001	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0080906_7	phrog_140	143.8	7.39886e-43	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0080906_7	UniRef90_A0A1C5T0C1	128.0	3.21e-35	Holliday junction resolvase	N/A
eggNOG-mapper	UHGV-0080906_7	1443125.Z962_p0037	118.0	2.46e-32	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-0080906_7	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0080906_7	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0080906_7	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-0080906_8	phrog_9	260.9	0	terminase large subunit	head and packaging
UniRef90	UHGV-0080906_8	UniRef90_UPI00156FA9A2	693.0	0	terminase large subunit	N/A
eggNOG-mapper	UHGV-0080906_8	1211817.CCAT010000007_gene1040	495.0	0	Terminase	N/A
Pfam	UHGV-0080906_8	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0080906_8	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0080906_8	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0080906_8	PF20441,PF03354,MF_04145,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0080906_9	phrog_12	142.4	2.7003e-42	portal protein	head and packaging
UniRef90	UHGV-0080906_9	UniRef90_R6Z5U3	395.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0080906_9	1536774.H70357_10620	313.0	0	Phage portal protein	N/A
Pfam	UHGV-0080906_9	PF04860	N/A	N/A	Phage portal protein	Phage_portal
COG	UHGV-0080906_9	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0080906_9	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-0080906_10	K01447	70.4	3.7e-20	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0080906_10	phrog_1794	142.5	3.89981e-42	amidase	lysis
UniRef90	UHGV-0080906_10	UniRef90_A0A3N0I5S2	236.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-0080906_10	573061.Clocel_3960	233.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-0080906_10	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
COG	UHGV-0080906_10	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0080906_10	PF01510,PF01471,MF_04111,COG5632,COG3409	N/A	N/A	N/A	N/A
KOfam	UHGV-0080906_11	K06904	104.3	1.7e-30	N/A	N/A
PHROG	UHGV-0080906_11	phrog_80	128.7	6.6e-38	head maturation protease	head and packaging
UniRef90	UHGV-0080906_11	UniRef90_A0A415G8A3	162.0	0	HK97 family phage prohead protease	N/A
eggNOG-mapper	UHGV-0080906_11	1123288.SOV_2c03620	140.0	5.43e-39	Caudovirus prohead serine protease	N/A
Pfam	UHGV-0080906_11	PF04586	N/A	N/A	Caudovirus prohead serine protease	Peptidase_S78
NCBIFam	UHGV-0080906_11	TIGR01543.1	N/A	N/A	HK97 family phage prohead protease	N/A
COG	UHGV-0080906_11	COG3740	N/A	N/A	Phage head maturation protease	N/A
structural_annotation	UHGV-0080906_11	PF04586,TIGR01543,COG3740	N/A	N/A	N/A	N/A
PHROG	UHGV-0080906_12	phrog_10	103.8	1.3e-30	major head protein	head and packaging
UniRef90	UHGV-0080906_12	UniRef90_UPI00069461CE	444.0	0	phage major capsid protein	N/A
eggNOG-mapper	UHGV-0080906_12	1157490.EL26_20710	255.0	0	Phage capsid family	N/A
Pfam	UHGV-0080906_12	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0080906_12	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0080906_12	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0080906_12	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
UniRef90	UHGV-0080906_13	UniRef90_UPI001E432EFF	64.3	0.000000000011	phage head-tail connector protein	N/A
UniRef90	UHGV-0080906_14	UniRef90_UPI00156F5992	94.4	1.15e-22	head-tail adaptor protein	N/A
eggNOG-mapper	UHGV-0080906_14	1536774.H70357_10645	56.6	0.0000000107	N/A	N/A
Pfam	UHGV-0080906_14	PF05521	N/A	N/A	Phage head-tail joining protein	Phage_H_T_join
NCBIFam	UHGV-0080906_14	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
structural_annotation	UHGV-0080906_14	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0080906_15	TIGR01725	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0080906_16	PF05657	N/A	N/A	N/A	N/A
PHROG	UHGV-0080906_17	phrog_88	107.6	1.1e-31	major tail protein	tail
UniRef90	UHGV-0080906_17	UniRef90_A0A843GGC8	107.0	1.49e-24	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0080906_17	1230342.CTM_17012	60.1	0.0000000155	phage major tail protein, phi13 family	N/A
NCBIFam	UHGV-0080906_17	TIGR01603.1	N/A	N/A	major tail protein	N/A
COG	UHGV-0080906_17	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0080906_17	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A
KOfam	UHGV-0080906_19	K10398	41.0	0.0000000000041	KIF11, EG5; kinesin family member 11	N/A
PHROG	UHGV-0080906_19	phrog_1272	231.1	0	tail length tape measure protein	tail
UniRef90	UHGV-0080906_19	UniRef90_UPI001EDCC813	226.0	0	phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-0080906_19	397290.C810_00429	203.0	0	Phage-related minor tail protein	N/A
Pfam	UHGV-0080906_19	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
COG	UHGV-0080906_19	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
PHROG	UHGV-0080906_20	phrog_33	67.6	3e-19	distal tail protein Dit	tail
UniRef90	UHGV-0080906_20	UniRef90_U2JPC0	68.6	0.000000000535	Phage tail component protein	N/A
eggNOG-mapper	UHGV-0080906_20	742733.HMPREF9469_05019	68.9	0.0000000000782	Phage tail protein	N/A
Pfam	UHGV-0080906_20	PF05709	N/A	N/A	Phage tail protein RIFT-related domain	Sipho_tail
structural_annotation	UHGV-0080906_20	PF20753,PF16774,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0080906_21	phrog_538	187.8	0	minor tail protein	tail
UniRef90	UHGV-0080906_21	UniRef90_UPI0004813F81	188.0	0	siphovirus ReqiPepy6 Gp37-like family protein	N/A
eggNOG-mapper	UHGV-0080906_21	411460.RUMTOR_01333	152.0	3.3e-39	N/A	N/A
Pfam	UHGV-0080906_21	PF14594	N/A	N/A	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
KOfam	UHGV-0080906_24	K03581	320.3	0	recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]	N/A
PHROG	UHGV-0080906_24	phrog_4412	287.7	0	exonuclease V	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0080906_24	UniRef90_A0A173XIX1	239.0	0	Exodeoxyribonuclease V alpha chain	N/A
eggNOG-mapper	UHGV-0080906_24	1235799.C818_02707	214.0	0	DNA-dependent ATPase and ATP-dependent 5'-3' DNA helicase. Has no activity on blunt DNA or DNA with 3'-overhangs, requires at least 10 bases of 5'-ssDNA for helicase activity	N/A
PADLOC	UHGV-0080906_24	cluster10	184.7	0	RecD_0_IVD	CRISPR-CAS
Pfam	UHGV-0080906_24	PF13604	N/A	N/A	AAA domain	AAA_30
Pfam	UHGV-0080906_24	PF13538	N/A	N/A	UvrD-like helicase C-terminal domain	UvrD_C_2
COG	UHGV-0080906_24	COG0507	N/A	N/A	ATPase/5'-3' helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V)	N/A
KOfam	UHGV-0080906_26	K07171	57.4	4.2e-16	mazF, ndoA, chpA; mRNA interferase MazF [EC:3.1.-.-]	N/A
PHROG	UHGV-0080906_26	phrog_1936	43.5	0.0000000000051	MazF-like growth inhibitor	moron, auxiliary metabolic gene and host takeover
Pfam	UHGV-0080906_26	PF02452	N/A	N/A	PemK-like, MazF-like toxin of type II toxin-antitoxin system	PemK_toxin
COG	UHGV-0080906_26	COG2337	N/A	N/A	mRNA-degrading endonuclease MazF, toxin component of the MazEF toxin-antitoxin module	N/A
KOfam	UHGV-0080906_27	K07505	62.1	8.8e-18	repA; regulatory protein RepA	N/A
PHROG	UHGV-0080906_27	phrog_239	60.9	4.3e-18	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0080906_27	UniRef90_A0A7T7XLX7	70.5	0.000000000803	AAA family ATPase	N/A
eggNOG-mapper	UHGV-0080906_27	1444712.BN1013_00379	65.5	0.0000000125	N/A	N/A
Pfam	UHGV-0080906_27	PF13481	N/A	N/A	AAA domain	AAA_25
COG	UHGV-0080906_27	COG3598	N/A	N/A	RecA-family ATPase	N/A
structural_annotation	UHGV-0080906_27	PF03796,PF05848,MF_01498,TIGR00416,NF038268,COG1066	N/A	N/A	N/A	N/A
PHROG	UHGV-0080906_28	phrog_3490	72.0	1.1e-20	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0080906_28	UniRef90_A0A3D5WJ50	70.1	0.0000000000964	ERCC4 domain-containing protein	N/A
eggNOG-mapper	UHGV-0080906_28	1232453.BAIF02000057_gene1143	58.9	0.000000126	N/A	N/A
Pfam	UHGV-0080906_28	PF02732	N/A	N/A	ERCC4 domain	ERCC4
KOfam	UHGV-0080906_31	K22300	75.1	1.2e-21	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0080906_31	phrog_2328	59.5	4.3e-17	transcriptional repressor	transcription regulation
UniRef90	UHGV-0080906_31	UniRef90_R9KL24	60.5	0.0000000018	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0080906_31	397290.C810_01441	60.5	0.000000000303	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0080906_31	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0080906_31	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0080906_31	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0080906_37	K14059	123.1	4.2e-36	int; integrase	N/A
PHROG	UHGV-0080906_37	phrog_1	94.6	1.6e-27	integrase	integration and excision
UniRef90	UHGV-0080906_37	UniRef90_UPI000563D65F	269.0	0	site-specific integrase	N/A
eggNOG-mapper	UHGV-0080906_37	1410612.JNKO01000002_gene2429	269.0	0	DNA integration	N/A
Pfam	UHGV-0080906_37	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0080906_37	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0080906_37	PF00589,PF02899,MF_01807,TIGR02224,COG4974	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0080906_38	1378168.N510_00033	55.1	0.000000228	DNA integration	N/A
COG	UHGV-0080906_38	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A