UHGV-0080959 (vOTU-156331)

Viral Genome: UHGV-0080959

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0080959
vOTU ID	vOTU-156331
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_139638
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	68.42 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9823
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	30.3
Jumbo phage	No

Genome content
Genome length (bp)	28,972
GC content	55.23%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	51
CDS density	94%
Average CDS length (bps)	536.29
Total tRNA genes	3
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 68.42)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
eggNOG-mapper	UHGV-0080959_1	748224.HMPREF9436_01407	72.0	0.00000000000497	COG NOG18825 non supervised orthologous group	N/A
PHROG	UHGV-0080959_2	phrog_3558	200.7	0	tail protein	tail
UniRef90	UHGV-0080959_2	UniRef90_F9P917	84.3	0.000000000000158	Phage minor structural protein, N-terminal domain protein	N/A
eggNOG-mapper	UHGV-0080959_2	1035184.HMPREF1042_1326	84.3	0.0000000000000265	Prophage endopeptidase tail	N/A
Pfam	UHGV-0080959_2	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
COG	UHGV-0080959_2	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0080959_2	PF14594,TIGR01665,COG4379	N/A	N/A	N/A	N/A
UniRef90	UHGV-0080959_3	UniRef90_A0A417QGC1	116.0	3.15e-28	MtfA protein	N/A
eggNOG-mapper	UHGV-0080959_3	411490.ANACAC_00709	103.0	5.45e-24	phage tail	N/A
COG	UHGV-0080959_3	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0080959_3	PF05709,PF02408,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0080959_4	phrog_28775	129.3	2.6e-38	tail length tape measure protein	tail
UniRef90	UHGV-0080959_4	UniRef90_A0A6N7TLD3	1389.0	0	Tape measure protein	N/A
eggNOG-mapper	UHGV-0080959_4	883066.HMPREF9233_00612	127.0	3.57e-27	tape measure	N/A
Pfam	UHGV-0080959_4	PF20155	N/A	N/A	Tape measure protein	TMP_3
NCBIFam	UHGV-0080959_4	TIGR02675.1	N/A	N/A	tape measure protein	N/A
COG	UHGV-0080959_4	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-0080959_4	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-0080959_7	phrog_885	74.2	1.6e-21	major tail protein	tail
eggNOG-mapper	UHGV-0080959_7	1111121.HMPREF1247_0789	172.0	0	N/A	N/A
structural_annotation	UHGV-0080959_7	PF06488,TIGR01603,COG5437	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0080959_8	PF13554	N/A	N/A	N/A	N/A
PHROG	UHGV-0080959_9	phrog_17977	41.9	0.000000000014	N/A	unknown function
UniRef90	UHGV-0080959_9	UniRef90_A0A844DHJ8	119.0	3.28e-32	Phage head closure protein	N/A
structural_annotation	UHGV-0080959_9	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0080959_11	phrog_544	140.5	1.29998e-41	major head protein	head and packaging
UniRef90	UHGV-0080959_11	UniRef90_R0BKA1	437.0	0	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0080959_11	476272.RUMHYD_01776	320.0	0	N/A	N/A
structural_annotation	UHGV-0080959_11	PF03864,MF_04119,TIGR04387,COG4834	N/A	N/A	N/A	N/A
PHROG	UHGV-0080959_13	phrog_478	126.3	1.3e-37	site-specific recombination directionality factor RDF	integration and excision
UniRef90	UHGV-0080959_13	UniRef90_A0A373Q857	167.0	0	YopX domain-containing protein	N/A
eggNOG-mapper	UHGV-0080959_13	1111121.HMPREF1247_0834	96.3	7.89e-24	N/A	N/A
PHROG	UHGV-0080959_15	phrog_5	50.3	0.000000000000061	tail completion or Neck1 protein	connector
UniRef90	UHGV-0080959_15	UniRef90_A0A6N7TNP6	280.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0080959_15	929506.CbC4_1219	87.4	6.7e-20	N/A	N/A
Pfam	UHGV-0080959_15	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-0080959_15	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-0080959_17	phrog_2468	80.1	1.8e-23	head morphogenesis	head and packaging
UniRef90	UHGV-0080959_17	UniRef90_A0A6N7TLR7	620.0	0	Phage_Mu_F domain-containing protein	N/A
eggNOG-mapper	UHGV-0080959_17	1504822.CCNO01000013_gene286	111.0	3.22e-24	cell adhesion	N/A
Pfam	UHGV-0080959_17	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
COG	UHGV-0080959_17	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0080959_17	PF04233,TIGR01641,COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-0080959_19	phrog_64	124.2	4.9e-37	portal protein	head and packaging
UniRef90	UHGV-0080959_19	UniRef90_A0A6N7TNT3	893.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0080959_19	642492.Clole_2764	80.5	0.000000000000237	phage portal protein, SPP1	N/A
Pfam	UHGV-0080959_19	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0080959_19	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
KOfam	UHGV-0080959_20	K06909	142.4	4.30058e-42	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0080959_20	phrog_10250	175.2	0	N/A	unknown function
UniRef90	UHGV-0080959_20	UniRef90_A0A844D8I4	843.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0080959_20	411490.ANACAC_00783	494.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-0080959_20	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
Pfam	UHGV-0080959_20	PF17289	N/A	N/A	Terminase RNaseH-like domain	Terminase_6C
NCBIFam	UHGV-0080959_20	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0080959_20	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0080959_20	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
UniRef90	UHGV-0080959_21	UniRef90_UPI0018CC2891	116.0	2.94e-30	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0080959_21	1235790.C805_00037	111.0	3.67e-29	N/A	N/A
structural_annotation	UHGV-0080959_21	PF04218	N/A	N/A	N/A	N/A
UniRef90	UHGV-0080959_22	UniRef90_A0A6N7TNN9	71.6	0.000000000000835	N/A	N/A
structural_annotation	UHGV-0080959_22	PF07374	N/A	N/A	N/A	N/A
KOfam	UHGV-0080959_24	K01160	60.0	7.3e-17	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0080959_24	phrog_34	59.8	6.2e-17	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0080959_24	UniRef90_A0A6N7TND6	226.0	0	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0080959_24	875454.BAEW01000002_gene491	135.0	1.32e-39	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-0080959_24	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0080959_24	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0080959_24	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-0080959_25	phrog_3136	122.2	1.6e-36	N/A	unknown function
UniRef90	UHGV-0080959_25	UniRef90_UPI001CBCD733	198.0	0	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-0080959_25	97139.C824_00742	67.0	0.0000000000194	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	N/A
COG	UHGV-0080959_25	COG4933	N/A	N/A	Predicted transcriptional regulator, contains an HTH and PUA-like domains	N/A
structural_annotation	UHGV-0080959_25	PF08819,MF_00684,NF008917,COG4933	N/A	N/A	N/A	N/A
PHROG	UHGV-0080959_26	phrog_757	119.9	1.7e-35	DNA methyltransferase	other
UniRef90	UHGV-0080959_26	UniRef90_UPI001C00B13F	330.0	0	DNA cytosine methyltransferase	N/A
eggNOG-mapper	UHGV-0080959_26	748224.HMPREF9436_03069	224.0	0	DNA (cytosine-5-)-methyltransferase activity	N/A
COG	UHGV-0080959_26	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
PHROG	UHGV-0080959_27	phrog_757	51.3	0.000000000000018	DNA methyltransferase	other
UniRef90	UHGV-0080959_27	UniRef90_A0A7J2R6L5	68.6	0.0000000000000306	DNA cytosine methyltransferase (Fragment)	N/A
eggNOG-mapper	UHGV-0080959_27	748224.HMPREF9436_03069	102.0	1.94e-26	DNA (cytosine-5-)-methyltransferase activity	N/A
COG	UHGV-0080959_27	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0080959_29	PF11417	N/A	N/A	N/A	N/A
KOfam	UHGV-0080959_30	K02086	60.5	2.3e-17	dnaD; DNA replication protein	N/A
PHROG	UHGV-0080959_30	phrog_186	72.6	4.8e-21	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0080959_30	UniRef90_A0A844D5V0	224.0	0	DnaD domain protein	N/A
eggNOG-mapper	UHGV-0080959_30	748224.HMPREF9436_03357	65.9	0.000000000689	N/A	N/A
Pfam	UHGV-0080959_30	PF19808	N/A	N/A	N/A	DUF6291
Pfam	UHGV-0080959_30	PF07261	N/A	N/A	Replication initiation and membrane attachment	DnaB_2
NCBIFam	UHGV-0080959_30	TIGR01446.1	N/A	N/A	DnaD domain protein	N/A
structural_annotation	UHGV-0080959_30	PF19808,PF07261,TIGR01446,COG3935	N/A	N/A	N/A	N/A
UniRef90	UHGV-0080959_31	UniRef90_UPI001CBB85F6	117.0	7.5e-30	single-stranded DNA-binding protein	N/A
COG	UHGV-0080959_31	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0080959_31	PF00436,MF_00720,NF004512,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0080959_32	phrog_2760	180.5	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0080959_32	UniRef90_A0A3A6EAW6	518.0	0	Phage recombination protein Bet	N/A
eggNOG-mapper	UHGV-0080959_32	1235794.C811_01355	152.0	1.46001e-41	RecT family	N/A
Pfam	UHGV-0080959_32	PF03837	N/A	N/A	RecT family	RecT
NCBIFam	UHGV-0080959_32	TIGR01913.1	N/A	N/A	phage recombination protein Bet	N/A
COG	UHGV-0080959_32	COG3723	N/A	N/A	Recombinational DNA repair protein RecT	N/A
structural_annotation	UHGV-0080959_32	PF03837,TIGR01913,COG3723	N/A	N/A	N/A	N/A
PHROG	UHGV-0080959_33	phrog_674	148.1	6.44597e-44	N/A	unknown function
UniRef90	UHGV-0080959_33	UniRef90_A0A3A6E846	480.0	0	N/A	N/A
eggNOG-mapper	UHGV-0080959_33	556268.OFAG_00840	84.0	6.98e-16	N/A	N/A
Pfam	UHGV-0080959_33	PF07083	N/A	N/A	N/A	DUF1351
structural_annotation	UHGV-0080959_33	PF07083	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0080959_34	PF14120	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0080959_37	PF09537	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0080959_38	PF12270,NF040944	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0080959_39	PF10743,NF033787	N/A	N/A	N/A	N/A
PHROG	UHGV-0080959_40	phrog_4433	138.2	0	N/A	unknown function
eggNOG-mapper	UHGV-0080959_40	394503.Ccel_3068	112.0	2.21e-28	regulation of DNA-templated transcription, elongation	N/A
COG	UHGV-0080959_40	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A
PHROG	UHGV-0080959_41	phrog_2593	95.0	7.6e-28	anti-repressor	transcription regulation
UniRef90	UHGV-0080959_41	UniRef90_UPI001C2426FA	143.0	1e-37	phage antirepressor Ant	N/A
eggNOG-mapper	UHGV-0080959_41	476272.RUMHYD_03308	155.0	3.64338e-44	BRO family, N-terminal domain	N/A
Pfam	UHGV-0080959_41	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
COG	UHGV-0080959_41	COG3617	N/A	N/A	Prophage antirepressor	N/A
structural_annotation	UHGV-0080959_41	PF02498,COG3617	N/A	N/A	N/A	N/A
PHROG	UHGV-0080959_45	phrog_32852	41.0	0.000000000027	N/A	unknown function
structural_annotation	UHGV-0080959_46	PF01775,MF_00273,NF001981,COG2157	N/A	N/A	N/A	N/A
KOfam	UHGV-0080959_48	K22300	47.9	0.00000000000029	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0080959_48	phrog_2967	45.3	0.0000000000012	transcriptional regulator	transcription regulation
UniRef90	UHGV-0080959_48	UniRef90_A0A844DFR0	180.0	0	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0080959_48	748224.HMPREF9436_01444	144.0	8.11352e-43	N/A	N/A
Pfam	UHGV-0080959_48	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0080959_48	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0080959_48	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
Pfam	UHGV-0080959_51	PF14471	N/A	N/A	N/A	DUF4428