UHGV-0082382 (vOTU-040051)

Viral Genome: UHGV-0082382

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0082382
vOTU ID	vOTU-040051
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_159712
Associated BioSample	SAMEA3136729
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	64.89 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9759
Virus hallmark genes (geNomad)	13
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	30.39
Jumbo phage	No

Genome content
Genome length (bp)	25,838
GC content	47.36%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	40
CDS density	93%
Average CDS length (bps)	601.35
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 64.89)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0082382_1	phrog_5110	67.6	1.6e-19	terminase small subunit	head and packaging
UniRef90	UHGV-0082382_1	UniRef90_UPI000A26C9C4	61.6	0.000000000248	P27 family phage terminase small subunit	N/A
structural_annotation	UHGV-0082382_1	PF05119,TIGR01558	N/A	N/A	N/A	N/A
PHROG	UHGV-0082382_2	phrog_9	229.3	0	terminase large subunit	head and packaging
UniRef90	UHGV-0082382_2	UniRef90_UPI0018737C02	852.0	0	terminase large subunit	N/A
eggNOG-mapper	UHGV-0082382_2	1235792.C808_00083	644.0	0	Phage terminase-like protein large subunit	N/A
Pfam	UHGV-0082382_2	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0082382_2	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0082382_2	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0082382_3	phrog_12	112.8	2.3e-33	portal protein	head and packaging
UniRef90	UHGV-0082382_3	UniRef90_G9YSB8	447.0	0	Phage portal protein, HK97 family	N/A
eggNOG-mapper	UHGV-0082382_3	349161.Dred_2606	327.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-0082382_3	PF04860	N/A	N/A	Phage portal protein	Phage_portal
COG	UHGV-0082382_3	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0082382_3	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-0082382_4	K01358	139.7	2.89999e-41	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0082382_4	phrog_94	258.6	0	head maturation protease	head and packaging
UniRef90	UHGV-0082382_4	UniRef90_A0A1C6FFN6	357.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-0082382_4	349161.Dred_2605	284.0	0	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-0082382_4	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0082382_4	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-0082382_4	PF00574,MF_00444,NF011090,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-0082382_5	phrog_10	138.6	6.79994e-41	major head protein	head and packaging
UniRef90	UHGV-0082382_5	UniRef90_A0A1Y4BVI1	612.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0082382_5	1235792.C808_00086	481.0	0	Phage capsid family	N/A
Pfam	UHGV-0082382_5	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
Pfam	UHGV-0082382_5	PF12733	N/A	N/A	Cadherin-like beta sandwich domain	Cadherin-like
NCBIFam	UHGV-0082382_5	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0082382_5	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0082382_5	PF05065,PF12733,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0082382_6	phrog_749	73.7	2e-21	N/A	unknown function
UniRef90	UHGV-0082382_6	UniRef90_A0A7V7BBS9	75.5	0.00000000000000114	Phage gp6-like head-tail connector protein	N/A
eggNOG-mapper	UHGV-0082382_6	349161.Dred_2603	80.5	2.47e-18	N/A	N/A
PHROG	UHGV-0082382_7	phrog_19734	107.0	1.5e-31	N/A	unknown function
UniRef90	UHGV-0082382_7	UniRef90_A0A6I7GNS7	125.0	2.11e-34	Phage head closure protein	N/A
eggNOG-mapper	UHGV-0082382_7	349161.Dred_2602	90.9	5.77e-22	N/A	N/A
structural_annotation	UHGV-0082382_7	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0082382_8	999413.HMPREF1094_02005	89.0	1.23e-21	N/A	N/A
structural_annotation	UHGV-0082382_8	PF05657,COG3167	N/A	N/A	N/A	N/A
PHROG	UHGV-0082382_9	phrog_5	51.1	0.000000000000024	tail completion or Neck1 protein	connector
eggNOG-mapper	UHGV-0082382_9	908340.HMPREF9406_2573	120.0	1.11e-32	N/A	N/A
NCBIFam	UHGV-0082382_9	TIGR01725.1	N/A	N/A	HK97-gp10 family putative phage morphogenesis protein	N/A
structural_annotation	UHGV-0082382_9	TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-0082382_10	phrog_88	108.5	6.1e-32	major tail protein	tail
UniRef90	UHGV-0082382_10	UniRef90_G9YSC5	239.0	0	Phage major tail protein, phi13 family	N/A
eggNOG-mapper	UHGV-0082382_10	33035.JPJF01000039_gene278	111.0	5.79e-28	N/A	N/A
NCBIFam	UHGV-0082382_10	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-0082382_10	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0082382_12	1034347.CAHJ01000045_gene556	52.0	0.00000134	N/A	N/A
structural_annotation	UHGV-0082382_12	PF11836	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0082382_14	537013.CLOSTMETH_02705	55.1	0.00000566	N/A	N/A
KOfam	UHGV-0082382_15	K20283	50.0	0.0000000000000017	GOLGA4; golgin subfamily A member 4	N/A
PHROG	UHGV-0082382_15	phrog_1533	361.9	0	tail length tape measure protein	tail
UniRef90	UHGV-0082382_15	UniRef90_R9L0T3	345.0	0	Phage tail tape measure protein, TP901 family, core region	N/A
eggNOG-mapper	UHGV-0082382_15	1235793.C809_01928	345.0	0	nuclear chromosome segregation	N/A
Pfam	UHGV-0082382_15	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-0082382_15	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-0082382_15	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
PHROG	UHGV-0082382_16	phrog_33	101.9	1e-29	distal tail protein Dit	tail
UniRef90	UHGV-0082382_16	UniRef90_R5ADI0	325.0	0	Putative phage tail component	N/A
eggNOG-mapper	UHGV-0082382_16	545697.HMPREF0216_00910	172.0	0	tail component	N/A
Pfam	UHGV-0082382_16	PF05709	N/A	N/A	Phage tail protein RIFT-related domain	Sipho_tail
COG	UHGV-0082382_16	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0082382_16	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0082382_17	phrog_863	74.9	1.5e-21	tail fiber assembly	tail
UniRef90	UHGV-0082382_17	UniRef90_A0A136WFR9	175.0	0	BppU_N domain-containing protein	N/A
eggNOG-mapper	UHGV-0082382_17	1321778.HMPREF1982_03560	70.1	0.000000000511	N/A	N/A
Pfam	UHGV-0082382_17	PF10651	N/A	N/A	BppU N-terminal domain	BppU_N
Pfam	UHGV-0082382_17	PF21722	N/A	N/A	Glycine-rich domain	Gly_rich_2
COG	UHGV-0082382_17	COG2755	N/A	N/A	Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK	N/A
structural_annotation	UHGV-0082382_17	PF10651,PF21722,NF032891,COG2372	N/A	N/A	N/A	N/A
PHROG	UHGV-0082382_19	phrog_2310	64.4	9.8e-19	N/A	unknown function
eggNOG-mapper	UHGV-0082382_19	1391647.AVSV01000022_gene2576	57.8	0.0000000000824	N/A	N/A
PHROG	UHGV-0082382_20	phrog_1067	271.7	0	minor head protein	head and packaging
UniRef90	UHGV-0082382_20	UniRef90_A0A396NSB6	714.0	0	Prophage_tail domain-containing protein	N/A
eggNOG-mapper	UHGV-0082382_20	1443125.Z962_07985	221.0	0	Prophage endopeptidase tail	N/A
Pfam	UHGV-0082382_20	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0082382_20	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0082382_20	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0082382_20	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0082382_21	phrog_937	53.1	0.0000000000000063	hemolysin	other
eggNOG-mapper	UHGV-0082382_21	1519439.JPJG01000023_gene533	67.8	0.000000000000154	N/A	N/A
PHROG	UHGV-0082382_23	phrog_13890	88.2	5.3e-26	N/A	unknown function
UniRef90	UHGV-0082382_23	UniRef90_A0A3A8Z2N2	77.8	1.73e-17	ABC transporter ATP-binding protein	N/A
eggNOG-mapper	UHGV-0082382_23	1507.HMPREF0262_00298	77.4	3.26e-18	N/A	N/A
KOfam	UHGV-0082382_25	K07741	127.3	3e-37	antB; anti-repressor protein	N/A
PHROG	UHGV-0082382_25	phrog_130	274.8	0	anti-repressor Ant	transcription regulation
UniRef90	UHGV-0082382_25	UniRef90_R5ANG2	449.0	0	Phage antirepressor protein	N/A
eggNOG-mapper	UHGV-0082382_25	1589751.A0A0C5AEJ9_9CAUD	302.0	0	DNA binding	N/A
Pfam	UHGV-0082382_25	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
Pfam	UHGV-0082382_25	PF03374	N/A	N/A	Phage antirepressor protein KilAC domain	ANT
structural_annotation	UHGV-0082382_25	PF03374,PF02498,TIGR02681,COG3617,COG3645	N/A	N/A	N/A	N/A
PHROG	UHGV-0082382_26	phrog_36029	132.5	2.3e-39	N/A	unknown function
UniRef90	UHGV-0082382_26	UniRef90_A0A318KD97	106.0	1.79e-27	Superfamily 6 holin (LLH)	N/A
eggNOG-mapper	UHGV-0082382_26	411468.CLOSCI_01511	128.0	8.28e-37	N/A	N/A
KOfam	UHGV-0082382_27	K21471	49.5	0.0000000000001	cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]	N/A
UniRef90	UHGV-0082382_27	UniRef90_A0A0X8VCT6	267.0	0	NlpC/P60 domain-containing protein	N/A
eggNOG-mapper	UHGV-0082382_27	411902.CLOBOL_04837	102.0	1.87e-22	Phage lysozyme	N/A
COG	UHGV-0082382_27	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A
KOfam	UHGV-0082382_29	K14623	344.8	0	dinD; DNA-damage-inducible protein D	N/A
PHROG	UHGV-0082382_29	phrog_8036	347.7	0	N/A	unknown function
UniRef90	UHGV-0082382_29	UniRef90_R5A7E7	533.0	0	Bro-N domain-containing protein	N/A
eggNOG-mapper	UHGV-0082382_29	1280698.AUJS01000099_gene163	345.0	0	BRO family, N-terminal domain	N/A
AcrCatalog	UHGV-0082382_29	cluster_17589	163.0	0	NA	N/A
PADLOC	UHGV-0082382_29	Specificity_I_00032	321.4	0	Type I specificity subunit	RM
Pfam	UHGV-0082382_29	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
NCBIFam	UHGV-0082382_29	NF008573.0	N/A	N/A	DNA damage-inducible protein D	N/A
COG	UHGV-0082382_29	COG3645	N/A	N/A	Phage antirepressor protein YoqD, KilAC domain	N/A
structural_annotation	UHGV-0082382_29	PF09669,NF008573,COG3646	N/A	N/A	N/A	N/A
KOfam	UHGV-0082382_30	K01356	154.7	1.4013e-45	lexA; repressor LexA [EC:3.4.21.88]	N/A
PHROG	UHGV-0082382_30	phrog_4	83.6	3.6e-24	transcriptional repressor	transcription regulation
UniRef90	UHGV-0082382_30	UniRef90_A0A350TVK1	330.0	0	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0082382_30	411483.FAEPRAA2165_00756	137.0	2.32e-38	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	N/A
Pfam	UHGV-0082382_30	PF00717	N/A	N/A	Peptidase S24-like	Peptidase_S24
NCBIFam	UHGV-0082382_30	TIGR00498.1	N/A	N/A	transcriptional repressor LexA	N/A
COG	UHGV-0082382_30	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
eggNOG-mapper	UHGV-0082382_31	411490.ANACAC_00815	75.5	3.49e-16	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	N/A
COG	UHGV-0082382_31	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
KOfam	UHGV-0082382_32	K03627	43.7	0.0000000000058	MBF1; putative transcription factor	N/A
PHROG	UHGV-0082382_32	phrog_3	41.5	0.000000000053	transcriptional repressor	transcription regulation
UniRef90	UHGV-0082382_32	UniRef90_A0A350TVK0	120.0	2.52e-34	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0082382_32	936375.HMPREF1152_1045	83.2	1.56e-20	Helix-turn-helix XRE-family like proteins	N/A
PADLOC	UHGV-0082382_32	retron_type_VI_hth_cluster2_1	47.2	0.00000000000072	N/A	Retron
Pfam	UHGV-0082382_32	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0082382_32	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0082382_32	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0082382_33	PF20385	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0082382_36	PF06257,COG4466	N/A	N/A	N/A	N/A