UHGV-0082472 (vOTU-142730)

Viral Genome: UHGV-0082472

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0082472
vOTU ID	vOTU-142730
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_150538
Associated BioSample	SAMEA2784456
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	68.82 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9536
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	36.1
Jumbo phage	No

Genome content
Genome length (bp)	23,308
GC content	37.18%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	43
CDS density	86%
Average CDS length (bps)	464.30
Total tRNA genes	1
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 68.82)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
eggNOG-mapper	UHGV-0082472_1	536233.CLO_0897	54.7	0.0000000509	tail component	N/A
COG	UHGV-0082472_1	COG4722	N/A	N/A	Phage-related protein YomH	N/A
PHROG	UHGV-0082472_2	phrog_1067	423.5	0	minor head protein	head and packaging
UniRef90	UHGV-0082472_2	UniRef90_A0A1C6H6B4	564.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0082472_2	1160721.RBI_I01574	434.0	0	Prophage endopeptidase tail	N/A
Pfam	UHGV-0082472_2	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0082472_2	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0082472_2	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0082472_2	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0082472_3	phrog_24267	61.6	4.6e-18	N/A	unknown function
UniRef90	UHGV-0082472_3	UniRef90_A0A412AXT4	111.0	4.73e-24	N/A	N/A
eggNOG-mapper	UHGV-0082472_3	33035.JPJF01000023_gene3223	106.0	3.04e-24	the current gene model (or a revised gene model) may contain a frame shift	N/A
COG	UHGV-0082472_3	COG4675	N/A	N/A	Phage tail collar domain	N/A
structural_annotation	UHGV-0082472_3	PF10651,NF040788,COG2372	N/A	N/A	N/A	N/A
KOfam	UHGV-0082472_5	K01447	48.0	0.00000000000025	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0082472_5	phrog_7698	179.1	0	endolysin	lysis
UniRef90	UHGV-0082472_5	UniRef90_UPI0009861559	301.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-0082472_5	293826.Amet_2548	213.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-0082472_5	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
COG	UHGV-0082472_5	COG3023	N/A	N/A	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	N/A
structural_annotation	UHGV-0082472_5	PF01510,MF_04111,NF008758,COG5632	N/A	N/A	N/A	N/A
PHROG	UHGV-0082472_6	phrog_4105	41.7	0.000000000019	N/A	unknown function
PHROG	UHGV-0082472_7	phrog_1129	90.0	1.4e-26	holin	lysis
UniRef90	UHGV-0082472_7	UniRef90_UPI001C124A7D	98.2	1.48e-24	phage holin family protein	N/A
eggNOG-mapper	UHGV-0082472_7	411460.RUMTOR_01325	92.4	4.46e-23	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-0082472_7	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0082472_7	PF16079	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0082472_8	857293.CAAU_1766	53.1	0.000000611	N/A	N/A
structural_annotation	UHGV-0082472_8	PF05973,TIGR02683,COG4683	N/A	N/A	N/A	N/A
PHROG	UHGV-0082472_9	phrog_2339	45.1	0.0000000000012	HTH DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0082472_9	UniRef90_A0A7U9N515	92.4	2.69e-21	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0082472_9	1410625.JHWK01000002_gene391	78.6	2.2e-17	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0082472_9	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0082472_9	COG1813	N/A	N/A	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	N/A
eggNOG-mapper	UHGV-0082472_10	1031288.AXAA01000014_gene407	66.2	0.000000000013	Preprotein translocase subunit SecB	N/A
structural_annotation	UHGV-0082472_10	PF02556,MF_00821,NF004392,COG1952	N/A	N/A	N/A	N/A
UniRef90	UHGV-0082472_12	UniRef90_U2CXQ8	135.0	4.6e-40	Toxin-antitoxin system, antitoxin component, Xre family	N/A
eggNOG-mapper	UHGV-0082472_12	203119.Cthe_1750	57.0	0.000000000589	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-0082472_12	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-0082472_12	PF13560,TIGR02612,COG1396	N/A	N/A	N/A	N/A
AcrCatalog	UHGV-0082472_13	cluster_37489	42.4	0.000000222	NA	N/A
KOfam	UHGV-0082472_15	K14059	140.0	3.09995e-41	int; integrase	N/A
PHROG	UHGV-0082472_15	phrog_1	144.3	1.10002e-42	integrase	integration and excision
UniRef90	UHGV-0082472_15	UniRef90_R6ZYN0	301.0	0	Site-specific recombinase phage integrase family	N/A
eggNOG-mapper	UHGV-0082472_15	1095750.HMPREF9970_1688	277.0	0	Phage integrase, N-terminal SAM-like domain	N/A
Pfam	UHGV-0082472_15	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-0082472_15	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0082472_15	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0082472_15	PF00589,PF12167,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-0082472_16	phrog_2158	213.1	0	abortive infection resistance protein	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0082472_16	UniRef90_A0A1M5ZIM7	299.0	0	Abortive infection bacteriophage resistance protein	N/A
eggNOG-mapper	UHGV-0082472_16	1045858.Bint_2390	272.0	0	Abi-like protein	N/A
PADLOC	UHGV-0082472_16	AbiD	337.4	0	AbiD	Abi
Pfam	UHGV-0082472_16	PF07751	N/A	N/A	Abi-like protein	Abi_2
COG	UHGV-0082472_16	COG4823	N/A	N/A	Abortive infection bacteriophage resistance protein	N/A
structural_annotation	UHGV-0082472_16	PF07751,COG4823	N/A	N/A	N/A	N/A
KOfam	UHGV-0082472_17	K01356	149.5	3.08286e-44	lexA; repressor LexA [EC:3.4.21.88]	N/A
PHROG	UHGV-0082472_17	phrog_4	113.4	2.6e-33	transcriptional repressor	transcription regulation
UniRef90	UHGV-0082472_17	UniRef90_A0A1Y4J566	223.0	0	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0082472_17	1118057.CAGX01000020_gene1659	177.0	0	Represses a number of genes involved in the response to DNA damage (SOS response)	N/A
PADLOC	UHGV-0082472_17	retron_type_VI_hth_cluster2_1	49.2	0.00000000000011	N/A	Retron
Pfam	UHGV-0082472_17	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
Pfam	UHGV-0082472_17	PF00717	N/A	N/A	Peptidase S24-like	Peptidase_S24
COG	UHGV-0082472_17	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-0082472_17	PF00717,PF01381,MF_00015,TIGR00498,COG1974	N/A	N/A	N/A	N/A
PHROG	UHGV-0082472_19	phrog_9607	57.6	2.8e-16	N/A	unknown function
structural_annotation	UHGV-0082472_19	PF02883,MF_00791,NF012200,COG3354	N/A	N/A	N/A	N/A
Pfam	UHGV-0082472_21	PF04545	N/A	N/A	Sigma-70, region 4	Sigma70_r4
structural_annotation	UHGV-0082472_21	PF20432,MF_00535,NF041951,COG1396	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0082472_23	PF21596	N/A	N/A	N/A	N/A
PHROG	UHGV-0082472_24	phrog_253	121.3	7.4e-36	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0082472_24	UniRef90_A0A410PZR1	116.0	6.48e-30	Siphovirus Gp157 family protein	N/A
eggNOG-mapper	UHGV-0082472_24	686340.Metal_4000	84.7	1.91e-18	PFAM Siphovirus Gp157	N/A
Pfam	UHGV-0082472_24	PF05565	N/A	N/A	Siphovirus Gp157	Sipho_Gp157
structural_annotation	UHGV-0082472_24	PF05565,NF002139	N/A	N/A	N/A	N/A
PHROG	UHGV-0082472_25	phrog_14970	218.5	0	N/A	unknown function
UniRef90	UHGV-0082472_25	UniRef90_A0A1C5NV07	160.0	0	DNA damage response protein A	N/A
eggNOG-mapper	UHGV-0082472_25	1128398.Curi_c14240	166.0	0	double-strand break repair protein	N/A
COG	UHGV-0082472_25	COG4712	N/A	N/A	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	N/A
structural_annotation	UHGV-0082472_25	PF04098,TIGR00607,COG4712	N/A	N/A	N/A	N/A
PHROG	UHGV-0082472_26	phrog_7566	105.5	2.5e-31	N/A	unknown function
eggNOG-mapper	UHGV-0082472_26	1304866.K413DRAFT_1198	86.3	7.87e-21	N/A	N/A
PHROG	UHGV-0082472_27	phrog_1389	75.8	5.1e-22	N/A	unknown function
eggNOG-mapper	UHGV-0082472_27	1347392.CCEZ01000060_gene3269	96.3	2.12e-24	N/A	N/A
structural_annotation	UHGV-0082472_27	PF11056,TIGR04376,COG1842	N/A	N/A	N/A	N/A
KOfam	UHGV-0082472_28	K03111	140.1	2.50006e-41	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0082472_28	phrog_44	146.3	1.69557e-43	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0082472_28	UniRef90_UPI0004AC739F	171.0	0	single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0082472_28	1105031.HMPREF1141_2832	167.0	0	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-0082472_28	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0082472_28	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0082472_28	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0082472_28	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0082472_28	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0082472_29	phrog_2113	52.1	0.00000000000001	N/A	unknown function
structural_annotation	UHGV-0082472_29	PF21715,COG1654	N/A	N/A	N/A	N/A
PHROG	UHGV-0082472_30	phrog_20437	167.4	0	DNA replication initiation	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0082472_30	UniRef90_A0A3A6E2X3	240.0	0	N/A	N/A
eggNOG-mapper	UHGV-0082472_30	97138.C820_00626	221.0	0	N/A	N/A
Pfam	UHGV-0082472_30	PF14297	N/A	N/A	Lin1244/Lin1753-like, N-terminal	Lin1244_N
COG	UHGV-0082472_30	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0082472_30	PF14297	N/A	N/A	N/A	N/A
KOfam	UHGV-0082472_31	K01160	63.3	7.5e-18	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0082472_31	phrog_140	132.6	2.3e-39	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0082472_31	UniRef90_A0A7X5DCG3	134.0	1.07e-37	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0082472_31	272563.CD630_09360	114.0	8.62e-31	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-0082472_31	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0082472_31	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0082472_31	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
KOfam	UHGV-0082472_33	K22299	45.9	0.0000000000014	rghR; HTH-type transcriptional regulator, competence development regulator	N/A
PHROG	UHGV-0082472_33	phrog_5823	53.9	0.000000000000003	transcriptional regulator	transcription regulation
PADLOC	UHGV-0082472_33	retron_type_VI_hth_cluster2_1	44.3	0.000000000006	N/A	Retron
Pfam	UHGV-0082472_33	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0082472_33	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
PHROG	UHGV-0082472_34	phrog_5444	72.2	9.4e-21	N/A	unknown function
eggNOG-mapper	UHGV-0082472_34	1239384.K4MPU6_9CAUD	73.6	2.88e-16	N/A	N/A
PHROG	UHGV-0082472_35	phrog_6380	152.1	4.2039e-45	DNA methyltransferase	other
UniRef90	UHGV-0082472_35	UniRef90_A0A415L497	195.0	0	N-6 DNA methylase	N/A
eggNOG-mapper	UHGV-0082472_35	1095750.HMPREF9970_0171	175.0	0	site-specific DNA-methyltransferase (adenine-specific) activity	N/A
Pfam	UHGV-0082472_35	PF02384	N/A	N/A	N-6 DNA Methylase	N6_Mtase
COG	UHGV-0082472_35	COG0286	N/A	N/A	Type I restriction-modification system, DNA methylase subunit	N/A
structural_annotation	UHGV-0082472_35	PF02475,MF_02217,NF000058,COG2263	N/A	N/A	N/A	N/A
KOfam	UHGV-0082472_36	K03427	125.1	6.9e-37	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	N/A
PHROG	UHGV-0082472_36	phrog_6380	245.3	0	DNA methyltransferase	other
UniRef90	UHGV-0082472_36	UniRef90_A0A3D0EBT8	387.0	0	N6_Mtase domain-containing protein (Fragment)	N/A
eggNOG-mapper	UHGV-0082472_36	1095750.HMPREF9970_0172	249.0	0	site-specific DNA-methyltransferase (adenine-specific) activity	N/A
PADLOC	UHGV-0082472_36	MTase_I_00005	102.3	5.7e-31	Type I methyltransferase	RM
Pfam	UHGV-0082472_36	PF02384	N/A	N/A	N-6 DNA Methylase	N6_Mtase
COG	UHGV-0082472_36	COG0286	N/A	N/A	Type I restriction-modification system, DNA methylase subunit	N/A
structural_annotation	UHGV-0082472_36	PF02384,TIGR00497,COG0286	N/A	N/A	N/A	N/A
PHROG	UHGV-0082472_37	phrog_924	41.7	0.000000000026	N/A	unknown function
UniRef90	UHGV-0082472_37	UniRef90_A0A6H1ZAY1	57.0	0.00000000912	N/A	N/A
Pfam	UHGV-0082472_37	PF04448	N/A	N/A	N/A	DUF551
structural_annotation	UHGV-0082472_37	NF041588	N/A	N/A	N/A	N/A
PHROG	UHGV-0082472_40	phrog_599	49.2	0.00000000000011	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
Pfam	UHGV-0082472_40	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
structural_annotation	UHGV-0082472_40	PF14354,NF007260	N/A	N/A	N/A	N/A
UniRef90	UHGV-0082472_41	UniRef90_R7EVG2	213.0	0	Thymidylate synthase ThyX	N/A
eggNOG-mapper	UHGV-0082472_41	1235793.C809_02394	126.0	2.14e-34	N/A	N/A
Pfam	UHGV-0082472_41	PF02511	N/A	N/A	Thymidylate synthase complementing protein	Thy1
structural_annotation	UHGV-0082472_41	PF02511,MF_01408,TIGR02170,COG1351	N/A	N/A	N/A	N/A
PHROG	UHGV-0082472_43	phrog_36	49.1	0.000000000000096	transcriptional regulator	transcription regulation
UniRef90	UHGV-0082472_43	UniRef90_UPI001BB0884F	89.7	4.28e-20	N/A	N/A
eggNOG-mapper	UHGV-0082472_43	428125.CLOLEP_01806	130.0	6.78e-37	N/A	N/A
structural_annotation	UHGV-0082472_43	PF07374,TIGR01636	N/A	N/A	N/A	N/A