UHGV-0082659 (vOTU-074893)

Viral Genome: UHGV-0082659

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0082659
vOTU ID	vOTU-074893
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_167987
Associated BioSample	SAMEA3136708
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.9 (High-quality)
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9754
Virus hallmark genes (geNomad)	13
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	34.75
Jumbo phage	No

Genome content
Genome length (bp)	46,997
GC content	32.61%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	75
CDS density	88%
Average CDS length (bps)	549.84
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0082659_1	K01447	62.3	1e-17	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0082659_1	phrog_7698	156.2	0	endolysin	lysis
UniRef90	UHGV-0082659_1	UniRef90_UPI001D0AA402	578.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-0082659_1	1125712.HMPREF1316_2631	145.0	2.65e-40	N-Acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-0082659_1	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
COG	UHGV-0082659_1	COG3023	N/A	N/A	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	N/A
structural_annotation	UHGV-0082659_1	COG5632	N/A	N/A	N/A	N/A
PHROG	UHGV-0082659_3	phrog_443	53.7	0.0000000000000062	holin	lysis
UniRef90	UHGV-0082659_3	UniRef90_A0A2U2ELA1	79.0	6.71e-18	Membrane protein	N/A
eggNOG-mapper	UHGV-0082659_3	476272.RUMHYD_01759	85.5	3.96e-21	Putative lactococcus lactis phage r1t holin	N/A
Pfam	UHGV-0082659_3	PF16945	N/A	N/A	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
structural_annotation	UHGV-0082659_3	PF16945	N/A	N/A	N/A	N/A
PHROG	UHGV-0082659_5	phrog_20016	68.7	6.8e-20	N/A	unknown function
UniRef90	UHGV-0082659_5	UniRef90_A0A395WF88	264.0	0	BclA_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0082659_5	1226322.HMPREF1545_00077	62.8	0.000000000151	N/A	N/A
Pfam	UHGV-0082659_5	PF18573	N/A	N/A	BclA C-terminal domain	BclA_C
structural_annotation	UHGV-0082659_5	PF18573,NF033147	N/A	N/A	N/A	N/A
UniRef90	UHGV-0082659_6	UniRef90_A0A8F0WFQ8	69.7	0.000000000103	Outer capsid protein/viral fiber	N/A
eggNOG-mapper	UHGV-0082659_6	476272.RUMHYD_01770	115.0	4.53e-29	N/A	N/A
PHROG	UHGV-0082659_12	phrog_17312	49.2	0.000000000000024	tail protein	tail
eggNOG-mapper	UHGV-0082659_12	349123.Lreu23DRAFT_3172	63.2	0.000000305	N/A	N/A
Pfam	UHGV-0082659_12	PF12708	N/A	N/A	Pectate lyase superfamily protein	Pectate_lyase_3
structural_annotation	UHGV-0082659_13	PF05895,MF_04116,NF010681,COG1361	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0082659_14	PF10651,COG5513	N/A	N/A	N/A	N/A
PHROG	UHGV-0082659_15	phrog_1067	47.8	1.5e-23	minor head protein	head and packaging
eggNOG-mapper	UHGV-0082659_15	1232446.BAIE02000002_gene836	60.1	0.0000013	Phage minor structural protein	N/A
NCBIFam	UHGV-0082659_15	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0082659_15	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0082659_15	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0082659_16	phrog_33	52.1	0.000000000000017	distal tail protein Dit	tail
UniRef90	UHGV-0082659_16	UniRef90_A0A1C6JHE5	63.2	0.00000003	Phage-related protein	N/A
eggNOG-mapper	UHGV-0082659_16	1408823.AXUS01000025_gene2633	55.1	0.00000322	phage tail	N/A
Pfam	UHGV-0082659_16	PF05709	N/A	N/A	Phage tail protein RIFT-related domain	Sipho_tail
NCBIFam	UHGV-0082659_16	TIGR01633.1	N/A	N/A	distal tail protein Dit	N/A
COG	UHGV-0082659_16	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0082659_16	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
KOfam	UHGV-0082659_17	K10352	58.6	2.1e-17	MYH9s; myosin heavy chain 9/10/11/14	N/A
PHROG	UHGV-0082659_17	phrog_13339	325.4	0	tail length tape measure protein	tail
UniRef90	UHGV-0082659_17	UniRef90_A0A395WD11	1932.0	0	Phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-0082659_17	1117379.BABA_17397	247.0	0	Phage tail tape measure protein, TP901 family	N/A
Pfam	UHGV-0082659_17	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-0082659_17	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-0082659_17	COG5283	N/A	N/A	Phage-related tail protein	N/A
structural_annotation	UHGV-0082659_17	PF10145,TIGR01760,TIGR02971,COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-0082659_18	phrog_709	46.9	0.00000000000047	N/A	unknown function
structural_annotation	UHGV-0082659_18	PF11836	N/A	N/A	N/A	N/A
PHROG	UHGV-0082659_19	phrog_88	145.1	3.50325e-43	major tail protein	tail
UniRef90	UHGV-0082659_19	UniRef90_A0A395WA58	390.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-0082659_19	1033744.CAEL01000029_gene1276	154.0	9.80909e-45	Phage major tail protein, phi13 family	N/A
NCBIFam	UHGV-0082659_19	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-0082659_19	PF06488,TIGR01603,COG5437	N/A	N/A	N/A	N/A
UniRef90	UHGV-0082659_20	UniRef90_A0A374RUJ8	144.0	1.24001e-41	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0082659_20	86416.Clopa_0344	58.9	0.00000000323	N/A	N/A
Pfam	UHGV-0082659_20	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-0082659_20	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
UniRef90	UHGV-0082659_21	UniRef90_C3DN78	52.0	0.00000291	Prophage pi2 protein 38	N/A
eggNOG-mapper	UHGV-0082659_21	1169144.KB910924_gene332	49.3	0.00000481	N/A	N/A
structural_annotation	UHGV-0082659_21	PF05657,MF_00281,COG0016	N/A	N/A	N/A	N/A
PHROG	UHGV-0082659_22	phrog_1951	71.8	6.9e-21	head-tail adaptor	connector
UniRef90	UHGV-0082659_22	UniRef90_A0A395WC07	224.0	0	Head-tail adaptor protein	N/A
eggNOG-mapper	UHGV-0082659_22	1243664.CAVL020000054_gene3020	60.1	0.000000000276	head-tail adaptor	N/A
NCBIFam	UHGV-0082659_22	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
COG	UHGV-0082659_22	COG5614	N/A	N/A	Phage head-tail adaptor	N/A
structural_annotation	UHGV-0082659_22	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0082659_23	phrog_5223	44.3	0.0000000000026	neck protein	connector
UniRef90	UHGV-0082659_23	UniRef90_A0A374RXD1	79.3	2.52e-17	DNA-packaging protein	N/A
structural_annotation	UHGV-0082659_23	TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-0082659_24	phrog_10	84.6	1.4e-24	major head protein	head and packaging
UniRef90	UHGV-0082659_24	UniRef90_A0A395WF70	800.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0082659_24	1536774.H70357_10630	170.0	2.8026e-45	Phage capsid family	N/A
Pfam	UHGV-0082659_24	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0082659_24	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0082659_24	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0082659_24	PF05065,PF19962,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-0082659_25	K06904	86.2	5.1e-25	N/A	N/A
PHROG	UHGV-0082659_25	phrog_80	114.1	2e-33	head maturation protease	head and packaging
UniRef90	UHGV-0082659_25	UniRef90_A0A413UET6	347.0	0	HK97 family phage prohead protease	N/A
eggNOG-mapper	UHGV-0082659_25	411470.RUMGNA_02064	170.0	0	Caudovirus prohead serine protease	N/A
Pfam	UHGV-0082659_25	PF04586	N/A	N/A	Caudovirus prohead serine protease	Peptidase_S78
NCBIFam	UHGV-0082659_25	TIGR01543.1	N/A	N/A	HK97 family phage prohead protease	N/A
COG	UHGV-0082659_25	COG3740	N/A	N/A	Phage head maturation protease	N/A
structural_annotation	UHGV-0082659_25	PF04586,TIGR01543,COG3740	N/A	N/A	N/A	N/A
PHROG	UHGV-0082659_26	phrog_12	107.5	1e-31	portal protein	head and packaging
UniRef90	UHGV-0082659_26	UniRef90_A0A395W9X2	820.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0082659_26	1203606.HMPREF1526_01337	291.0	0	Portal protein	N/A
Pfam	UHGV-0082659_26	PF04860	N/A	N/A	Phage portal protein	Phage_portal
COG	UHGV-0082659_26	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0082659_26	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-0082659_27	phrog_9	308.9	0	terminase large subunit	head and packaging
UniRef90	UHGV-0082659_27	UniRef90_A0A395WD03	1124.0	0	Terminase large subunit	N/A
eggNOG-mapper	UHGV-0082659_27	742740.HMPREF9474_04307	549.0	0	COG COG4626 Phage terminase-like protein, large subunit	N/A
Pfam	UHGV-0082659_27	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0082659_27	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0082659_27	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0082659_27	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0082659_28	phrog_361	74.5	1.3e-21	terminase small subunit	head and packaging
UniRef90	UHGV-0082659_28	UniRef90_A0A1C6H6I9	80.1	6.43e-17	Phage terminase, small subunit	N/A
eggNOG-mapper	UHGV-0082659_28	1329516.JPST01000017_gene431	50.1	0.00000474	Phage terminase, small subunit	N/A
Pfam	UHGV-0082659_28	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
COG	UHGV-0082659_28	COG3747	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-0082659_28	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-0082659_29	phrog_119	59.0	8.3e-17	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0082659_29	UniRef90_A0A395WA48	265.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0082659_29	1211814.CAPG01000074_gene3460	66.2	0.00000000000191	HNH endonuclease	N/A
Pfam	UHGV-0082659_29	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0082659_29	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-0082659_39	PF10879	N/A	N/A	N/A	N/A
UniRef90	UHGV-0082659_40	UniRef90_A0A413UEX6	290.0	0	N/A	N/A
Pfam	UHGV-0082659_40	PF07374	N/A	N/A	N/A	DUF1492
structural_annotation	UHGV-0082659_40	PF07374,NF008895	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0082659_44	PF11061	N/A	N/A	N/A	N/A
PHROG	UHGV-0082659_45	phrog_22292	42.4	0.0000000000092	N/A	unknown function
structural_annotation	UHGV-0082659_46	PF01104,NF041014	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0082659_47	1123263.AUKY01000015_gene1588	62.0	0.0000000000239	N/A	N/A
structural_annotation	UHGV-0082659_49	PF17399	N/A	N/A	N/A	N/A
PHROG	UHGV-0082659_51	phrog_918	106.3	1.4e-31	N/A	unknown function
UniRef90	UHGV-0082659_51	UniRef90_UPI001D0B68F4	175.0	0	N/A	N/A
eggNOG-mapper	UHGV-0082659_51	411473.RUMCAL_00361	111.0	4.15e-31	N/A	N/A
Pfam	UHGV-0082659_51	PF19791	N/A	N/A	N/A	DUF6275
structural_annotation	UHGV-0082659_51	PF19791	N/A	N/A	N/A	N/A
PHROG	UHGV-0082659_52	phrog_173	105.2	7e-31	nucleoside triphosphate pyrophosphohydrolase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0082659_52	UniRef90_UPI001C25836D	216.0	0	dUTPase	N/A
eggNOG-mapper	UHGV-0082659_52	218284.CCDN010000001_gene545	65.9	0.0000000000343	dUTPase	N/A
Pfam	UHGV-0082659_52	PF08761	N/A	N/A	dUTPase	dUTPase_2
COG	UHGV-0082659_52	COG4508	N/A	N/A	Dimeric dUTPase, all-alpha-NTP-PPase (MazG) superfamily	N/A
structural_annotation	UHGV-0082659_52	PF08761,COG4508	N/A	N/A	N/A	N/A
PHROG	UHGV-0082659_53	phrog_774	61.4	1.1e-17	N/A	unknown function
eggNOG-mapper	UHGV-0082659_53	397290.C810_05225	64.3	0.0000000000199	N/A	N/A
PHROG	UHGV-0082659_54	phrog_757	66.9	2.3e-19	DNA methyltransferase	other
eggNOG-mapper	UHGV-0082659_54	428127.EUBDOL_01513	337.0	0	N/A	N/A
AcrCatalog	UHGV-0082659_54	cluster_47493	181.0	0	NA	N/A
structural_annotation	UHGV-0082659_54	PF00145,MF_00341,COG0270	N/A	N/A	N/A	N/A
UniRef90	UHGV-0082659_58	UniRef90_R6T064	85.5	5.18e-17	NUMOD4 domain-containing protein	N/A
structural_annotation	UHGV-0082659_58	PF13392,PF07453	N/A	N/A	N/A	N/A
KOfam	UHGV-0082659_59	K02315	120.8	1.6e-35	dnaC; DNA replication protein DnaC	N/A
PHROG	UHGV-0082659_59	phrog_50	107.8	1.3e-31	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0082659_59	UniRef90_A0A395WER8	518.0	0	Bac_DnaA domain-containing protein	N/A
eggNOG-mapper	UHGV-0082659_59	1211844.CBLM010000016_gene1509	134.0	2.37e-35	N/A	N/A
Pfam	UHGV-0082659_59	PF00308	N/A	N/A	Bacterial dnaA protein	Bac_DnaA
COG	UHGV-0082659_59	COG1484	N/A	N/A	DNA replication protein DnaC	N/A
structural_annotation	UHGV-0082659_59	PF01695,MF_01158,NF005378,COG1484	N/A	N/A	N/A	N/A
PHROG	UHGV-0082659_60	phrog_428	151.7	5.60519e-45	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0082659_60	UniRef90_A0A395WBX6	504.0	0	Phg_2220_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0082659_60	1194526.A284_08025	144.0	6.87e-39	Conserved phage C-terminus (Phg_2220_C)	N/A
Pfam	UHGV-0082659_60	PF09524	N/A	N/A	Conserved phage C-terminus (Phg_2220_C)	Phg_2220_C
NCBIFam	UHGV-0082659_60	TIGR02220.1	N/A	N/A	phage conserved hypothetical protein, C-terminal domain	N/A
COG	UHGV-0082659_60	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0082659_60	PF09524,PF08679,MF_01909,TIGR02220,NF040939,COG1675	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0082659_62	PF07378,MF_00783,COG5443	N/A	N/A	N/A	N/A
KOfam	UHGV-0082659_63	K04763	136.6	2.8e-40	xerD; integrase/recombinase XerD	N/A
PHROG	UHGV-0082659_63	phrog_1	119.8	3e-35	integrase	integration and excision
UniRef90	UHGV-0082659_63	UniRef90_A0A395W9T7	567.0	0	Site-specific integrase	N/A
eggNOG-mapper	UHGV-0082659_63	999413.HMPREF1094_02021	230.0	0	Phage integrase family	N/A
Pfam	UHGV-0082659_63	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0082659_63	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0082659_63	PF00589,PF13495,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A
UniRef90	UHGV-0082659_66	UniRef90_UPI001D14AAA4	71.6	0.0000000000000274	N/A	N/A
UniRef90	UHGV-0082659_69	UniRef90_UPI000E4DF961	63.5	0.00000000000317	ribbon-helix-helix domain-containing protein	N/A
Pfam	UHGV-0082659_69	PF01402	N/A	N/A	Ribbon-helix-helix protein, copG family	RHH_1
structural_annotation	UHGV-0082659_69	PF01402,NF041793,COG4710	N/A	N/A	N/A	N/A
KOfam	UHGV-0082659_71	K22300	65.9	8.9e-19	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0082659_71	phrog_2967	59.0	5.6e-17	transcriptional regulator	transcription regulation
UniRef90	UHGV-0082659_71	UniRef90_A0A395WA05	198.0	0	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0082659_71	999413.HMPREF1094_02045	100.0	1.95e-25	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0082659_71	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0082659_71	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0082659_71	PF01381,MF_00535,NF007257,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0082659_73	phrog_5059	184.4	0	N/A	unknown function
UniRef90	UHGV-0082659_73	UniRef90_A0A395WDV4	497.0	0	N/A	N/A
eggNOG-mapper	UHGV-0082659_73	1232446.BAIE02000002_gene792	172.0	0	N/A	N/A
Pfam	UHGV-0082659_73	PF08861	N/A	N/A	N/A	DUF1828
Pfam	UHGV-0082659_73	PF08862	N/A	N/A	N/A	DUF1829
structural_annotation	UHGV-0082659_73	PF08862,PF08861,MF_00722,COG3372	N/A	N/A	N/A	N/A
UniRef90	UHGV-0082659_74	UniRef90_A0A2A2EE23	70.5	0.00000000000141	N/A	N/A
eggNOG-mapper	UHGV-0082659_74	428127.EUBDOL_01263	94.0	1.84e-22	N/A	N/A
KOfam	UHGV-0082659_75	K14059	195.5	0	int; integrase	N/A
PHROG	UHGV-0082659_75	phrog_1	177.5	0	integrase	integration and excision
UniRef90	UHGV-0082659_75	UniRef90_A0A395WBW7	740.0	0	Site-specific integrase	N/A
eggNOG-mapper	UHGV-0082659_75	1235796.C815_00955	297.0	0	DNA integration	N/A
Pfam	UHGV-0082659_75	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0082659_75	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0082659_75	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A