UHGV-0082662 (vOTU-007248)

Viral Genome: UHGV-0082662

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0082662
vOTU ID	vOTU-007248
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_153893
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100 (Complete)
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9825
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	54.06
Jumbo phage	No

Genome content
Genome length (bp)	44,985
GC content	54.54%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	76
CDS density	91%
Average CDS length (bps)	538.90
Total tRNA genes	4
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0082662_1	phrog_19415	56.7	6.4e-16	N/A	unknown function
UniRef90	UHGV-0082662_1	UniRef90_UPI00195B69E4	53.9	0.00000419	N/A	N/A
eggNOG-mapper	UHGV-0082662_1	877411.JMMA01000002_gene2052	62.8	0.00000000065	N/A	N/A
Pfam	UHGV-0082662_1	PF19808	N/A	N/A	N/A	DUF6291
structural_annotation	UHGV-0082662_1	PF19808	N/A	N/A	N/A	N/A
UniRef90	UHGV-0082662_2	UniRef90_UPI001CBB85F6	111.0	1.33e-27	single-stranded DNA-binding protein	N/A
COG	UHGV-0082662_2	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0082662_2	PF00436,MF_00720,NF004512,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0082662_3	phrog_2760	185.1	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0082662_3	UniRef90_A0A3A6EAW6	472.0	0	Phage recombination protein Bet	N/A
eggNOG-mapper	UHGV-0082662_3	1235794.C811_01355	156.0	2.70451e-43	RecT family	N/A
Pfam	UHGV-0082662_3	PF03837	N/A	N/A	RecT family	RecT
NCBIFam	UHGV-0082662_3	TIGR01913.1	N/A	N/A	phage recombination protein Bet	N/A
COG	UHGV-0082662_3	COG3723	N/A	N/A	Recombinational DNA repair protein RecT	N/A
structural_annotation	UHGV-0082662_3	PF03837,TIGR01913,COG3723	N/A	N/A	N/A	N/A
PHROG	UHGV-0082662_4	phrog_674	145.5	3.9937e-43	N/A	unknown function
UniRef90	UHGV-0082662_4	UniRef90_A0A3A6E846	473.0	0	N/A	N/A
eggNOG-mapper	UHGV-0082662_4	556268.OFAG_00840	82.8	0.00000000000000181	N/A	N/A
Pfam	UHGV-0082662_4	PF07083	N/A	N/A	N/A	DUF1351
structural_annotation	UHGV-0082662_4	PF07083	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0082662_6	PF10743,NF033787	N/A	N/A	N/A	N/A
PHROG	UHGV-0082662_8	phrog_4433	156.2	0	N/A	unknown function
eggNOG-mapper	UHGV-0082662_8	394503.Ccel_3068	100.0	2.53e-23	regulation of DNA-templated transcription, elongation	N/A
COG	UHGV-0082662_8	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A
structural_annotation	UHGV-0082662_8	PF12120,NF007410	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0082662_11	1121865.OMW_01950	69.7	0.0000000000000107	N/A	N/A
structural_annotation	UHGV-0082662_11	PF17516,NF007197	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0082662_12	760568.Desku_0919	99.0	6.79e-23	N/A	N/A
structural_annotation	UHGV-0082662_12	PF03787,TIGR02581,COG1604	N/A	N/A	N/A	N/A
KOfam	UHGV-0082662_13	K07741	142.9	4.90034e-42	antB; anti-repressor protein	N/A
PHROG	UHGV-0082662_13	phrog_63	120.0	2.5e-35	anti-repressor Ant	transcription regulation
UniRef90	UHGV-0082662_13	UniRef90_A0A6N7TLD1	282.0	0	Phage antirepressor Ant	N/A
eggNOG-mapper	UHGV-0082662_13	1230342.CTM_16892	207.0	0	Phage antirepressor protein	N/A
Pfam	UHGV-0082662_13	PF08346	N/A	N/A	AntA/AntB antirepressor	AntA
Pfam	UHGV-0082662_13	PF03374	N/A	N/A	Phage antirepressor protein KilAC domain	ANT
COG	UHGV-0082662_13	COG3561	N/A	N/A	Phage anti-repressor protein Ant	N/A
structural_annotation	UHGV-0082662_13	PF03374,PF08346,TIGR02681,COG3561,COG3645	N/A	N/A	N/A	N/A
UniRef90	UHGV-0082662_14	UniRef90_UPI0018995761	71.6	0.00000000000000422	helix-turn-helix transcriptional regulator	N/A
structural_annotation	UHGV-0082662_14	PF13560,NF041951,COG1396	N/A	N/A	N/A	N/A
UniRef90	UHGV-0082662_16	UniRef90_A0A7X1LWA7	92.0	5.82e-23	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0082662_16	428125.CLOLEP_02737	63.9	0.00000000000124	N/A	N/A
KOfam	UHGV-0082662_17	K07727	44.0	0.0000000000053	K07727; putative transcriptional regulator	N/A
PHROG	UHGV-0082662_17	phrog_8	52.0	0.000000000000017	transcriptional regulator	transcription regulation
UniRef90	UHGV-0082662_17	UniRef90_A0A373XY93	90.9	3.62e-21	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0082662_17	1236976.JCM16418_2229	53.5	0.000000177	transcriptional	N/A
Pfam	UHGV-0082662_17	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
COG	UHGV-0082662_17	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0082662_17	PF12844,NF041951,COG1396	N/A	N/A	N/A	N/A
UniRef90	UHGV-0082662_19	UniRef90_A0A1W2B3I7	96.3	1.04e-20	Ig-like domain (Group 2)	N/A
eggNOG-mapper	UHGV-0082662_19	321955.AAGP01000017_gene2211	53.9	0.00000153	N/A	N/A
structural_annotation	UHGV-0082662_19	PF16900,NF040991	N/A	N/A	N/A	N/A
KOfam	UHGV-0082662_22	K15773	40.7	0.000000000047	hipB; HTH-type transcriptional regulator / antitoxin HipB	N/A
UniRef90	UHGV-0082662_22	UniRef90_A0A6N7TLT0	371.0	0	Helix-turn-helix domain-containing protein	N/A
Pfam	UHGV-0082662_22	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0082662_22	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0082662_22	PF13560,MF_00535,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0082662_23	K14059	145.1	8.60397e-43	int; integrase	N/A
PHROG	UHGV-0082662_23	phrog_1	168.8	0	integrase	integration and excision
UniRef90	UHGV-0082662_23	UniRef90_A0A6N7TNQ4	744.0	0	Tyrosine-type recombinase/integrase	N/A
eggNOG-mapper	UHGV-0082662_23	411471.SUBVAR_05137	261.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0082662_23	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0082662_23	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0082662_23	PF00589,MF_01808,NF007246,COG4974	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0082662_25	PF12510	N/A	N/A	N/A	N/A
PHROG	UHGV-0082662_26	phrog_20016	204.6	0	N/A	unknown function
UniRef90	UHGV-0082662_26	UniRef90_A0A285PT46	213.0	0	Tumour necrosis factor-like domain	N/A
eggNOG-mapper	UHGV-0082662_26	1226322.HMPREF1545_00077	181.0	0	N/A	N/A
structural_annotation	UHGV-0082662_26	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-0082662_27	phrog_16490	198.8	0	N/A	unknown function
eggNOG-mapper	UHGV-0082662_27	397290.C810_01328	126.0	1.4e-31	N/A	N/A
PHROG	UHGV-0082662_28	phrog_22984	70.4	2.5e-20	N/A	unknown function
PHROG	UHGV-0082662_29	phrog_21718	86.2	4.4e-25	N/A	unknown function
eggNOG-mapper	UHGV-0082662_29	397290.C810_05210	79.7	1.14e-16	N/A	N/A
PHROG	UHGV-0082662_30	phrog_3754	99.4	3.4e-29	N/A	unknown function
eggNOG-mapper	UHGV-0082662_30	1235790.C805_00054	108.0	1.27e-28	N/A	N/A
PHROG	UHGV-0082662_32	phrog_25567	43.7	0.000000000004	N/A	unknown function
COG	UHGV-0082662_32	COG2944	N/A	N/A	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	N/A
structural_annotation	UHGV-0082662_32	PF13560,NF040522	N/A	N/A	N/A	N/A
PHROG	UHGV-0082662_33	phrog_99	51.4	0.000000000000015	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0082662_33	UniRef90_A0A0K9N8D8	94.4	7.82e-20	Putative AP2 domain protein	N/A
eggNOG-mapper	UHGV-0082662_33	742740.HMPREF9474_00071	87.8	3.69e-18	N/A	N/A
Pfam	UHGV-0082662_33	PF00847	N/A	N/A	AP2 domain	AP2
structural_annotation	UHGV-0082662_33	PF18337,PF00847	N/A	N/A	N/A	N/A
KOfam	UHGV-0082662_36	K24213	74.9	6.9e-22	C1QTNF9; complement C1q and tumor necrosis factor-related protein 9	N/A
PHROG	UHGV-0082662_36	phrog_5073	78.9	4.9e-23	tail fiber protein	tail
eggNOG-mapper	UHGV-0082662_36	411483.FAEPRAA2165_00757	165.0	6.65617e-43	N/A	N/A
Pfam	UHGV-0082662_36	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
PHROG	UHGV-0082662_38	phrog_15303	118.6	2.8e-35	N/A	unknown function
Pfam	UHGV-0082662_38	PF09682	N/A	N/A	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
KOfam	UHGV-0082662_40	K07273	164.1	0	acm; lysozyme	N/A
PHROG	UHGV-0082662_40	phrog_291	129.4	3.2e-38	endolysin	lysis
UniRef90	UHGV-0082662_40	UniRef90_A0A564U0D3	378.0	0	Autolytic lysozyme	N/A
eggNOG-mapper	UHGV-0082662_40	718252.FP2_04890	223.0	0	hydrolase, family 25	N/A
Pfam	UHGV-0082662_40	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-0082662_40	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-0082662_40	PF01183,NF007404,COG3757	N/A	N/A	N/A	N/A
PHROG	UHGV-0082662_41	phrog_1382	40.6	0.000000000016	N/A	unknown function
PHROG	UHGV-0082662_43	phrog_10993	216.9	0	Hoc-like head decoration	head and packaging
UniRef90	UHGV-0082662_43	UniRef90_A0A350TI55	248.0	0	N/A	N/A
eggNOG-mapper	UHGV-0082662_43	718252.FP2_16970	238.0	0	N/A	N/A
Pfam	UHGV-0082662_43	PF19789	N/A	N/A	N/A	DUF6273
structural_annotation	UHGV-0082662_43	PF19789	N/A	N/A	N/A	N/A
PHROG	UHGV-0082662_45	phrog_3558	207.5	0	tail protein	tail
UniRef90	UHGV-0082662_45	UniRef90_UPI001C01D15B	160.0	1.5e-38	phage tail protein	N/A
eggNOG-mapper	UHGV-0082662_45	1235799.C818_04233	99.0	3.12e-19	Prophage endopeptidase tail	N/A
Pfam	UHGV-0082662_45	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
COG	UHGV-0082662_45	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0082662_45	PF14594,TIGR01665,COG4379	N/A	N/A	N/A	N/A
UniRef90	UHGV-0082662_46	UniRef90_A0A417QGC1	120.0	7.46e-30	MtfA protein	N/A
eggNOG-mapper	UHGV-0082662_46	1235792.C808_00094	115.0	1.45e-28	phage tail	N/A
COG	UHGV-0082662_46	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0082662_46	PF05709,PF02408,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0082662_47	phrog_28775	117.6	1.5e-36	tail length tape measure protein	tail
UniRef90	UHGV-0082662_47	UniRef90_A0A6N7TLD3	1157.0	0	Tape measure protein	N/A
eggNOG-mapper	UHGV-0082662_47	411470.RUMGNA_02228	125.0	7.42e-27	tape measure	N/A
Pfam	UHGV-0082662_47	PF20155	N/A	N/A	Tape measure protein	TMP_3
NCBIFam	UHGV-0082662_47	TIGR02675.1	N/A	N/A	tape measure protein	N/A
COG	UHGV-0082662_47	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-0082662_47	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-0082662_50	phrog_885	66.0	4.9e-19	major tail protein	tail
eggNOG-mapper	UHGV-0082662_50	1111121.HMPREF1247_0789	160.0	0	N/A	N/A
structural_annotation	UHGV-0082662_50	PF06488,TIGR01603,COG5437	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0082662_51	PF13554	N/A	N/A	N/A	N/A
PHROG	UHGV-0082662_52	phrog_17977	40.8	0.000000000033	N/A	unknown function
UniRef90	UHGV-0082662_52	UniRef90_A0A844DHJ8	116.0	2.67e-31	Phage head closure protein	N/A
structural_annotation	UHGV-0082662_52	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0082662_54	phrog_247	205.9	0	major head protein	head and packaging
UniRef90	UHGV-0082662_54	UniRef90_UPI001BA5448B	239.0	0	major capsid protein	N/A
eggNOG-mapper	UHGV-0082662_54	33035.JPJF01000106_gene3132	354.0	0	N/A	N/A
structural_annotation	UHGV-0082662_54	PF20036,MF_04113,TIGR04387,COG4653	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0082662_55	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-0082662_56	phrog_374	238.7	0	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0082662_56	UniRef90_A0A380IPI2	197.0	0	AP2 domain protein	N/A
eggNOG-mapper	UHGV-0082662_56	1460635.JCM19038_3433	205.0	0	N/A	N/A
structural_annotation	UHGV-0082662_57	PF07342	N/A	N/A	N/A	N/A
UniRef90	UHGV-0082662_58	UniRef90_A0A3A9HXZ9	84.0	2.85e-20	CopG family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0082662_58	1235800.C819_00492	81.6	4.04e-20	N/A	N/A
structural_annotation	UHGV-0082662_58	PF01402,COG4710	N/A	N/A	N/A	N/A
PHROG	UHGV-0082662_59	phrog_5	54.5	0.0000000000000031	tail completion or Neck1 protein	connector
UniRef90	UHGV-0082662_59	UniRef90_A0A6N7TNP6	301.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0082662_59	929506.CbC4_1219	94.7	1.01e-22	N/A	N/A
Pfam	UHGV-0082662_59	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-0082662_59	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-0082662_62	phrog_2468	76.6	1.9e-22	head morphogenesis	head and packaging
UniRef90	UHGV-0082662_62	UniRef90_A0A6N7TLR7	610.0	0	Phage_Mu_F domain-containing protein	N/A
eggNOG-mapper	UHGV-0082662_62	1504822.CCNO01000013_gene286	116.0	8.67e-26	cell adhesion	N/A
Pfam	UHGV-0082662_62	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
COG	UHGV-0082662_62	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0082662_62	PF04233,TIGR01641,COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-0082662_63	phrog_64	122.3	2e-36	portal protein	head and packaging
UniRef90	UHGV-0082662_63	UniRef90_A0A6N7TNT3	867.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0082662_63	357809.Cphy_2970	74.3	0.0000000000212	Phage portal protein, SPP1 family	N/A
Pfam	UHGV-0082662_63	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0082662_63	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
KOfam	UHGV-0082662_64	K06909	140.5	1.6e-41	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0082662_64	phrog_10250	171.9	0	N/A	unknown function
UniRef90	UHGV-0082662_64	UniRef90_A0A844D8I4	838.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0082662_64	411490.ANACAC_00783	488.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-0082662_64	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
NCBIFam	UHGV-0082662_64	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0082662_64	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0082662_64	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
UniRef90	UHGV-0082662_65	UniRef90_UPI0018CC2891	117.0	1.04e-30	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0082662_65	1226322.HMPREF1545_00042	114.0	3.75e-30	N/A	N/A
structural_annotation	UHGV-0082662_65	PF04218	N/A	N/A	N/A	N/A
PHROG	UHGV-0082662_66	phrog_36	69.6	6e-20	transcriptional regulator	transcription regulation
UniRef90	UHGV-0082662_66	UniRef90_A0A6N7TNN9	276.0	0	N/A	N/A
eggNOG-mapper	UHGV-0082662_66	748224.HMPREF9436_01463	78.2	2.25e-16	N/A	N/A
Pfam	UHGV-0082662_66	PF07374	N/A	N/A	N/A	DUF1492
structural_annotation	UHGV-0082662_66	PF04545,MF_00674,NF009180,COG1342	N/A	N/A	N/A	N/A
KOfam	UHGV-0082662_68	K01160	60.1	7e-17	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0082662_68	phrog_34	61.2	2.1e-17	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0082662_68	UniRef90_A0A6N7TND6	220.0	0	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0082662_68	875454.BAEW01000002_gene491	132.0	2.25e-38	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-0082662_68	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0082662_68	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0082662_68	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-0082662_70	phrog_757	185.2	0	DNA methyltransferase	other
UniRef90	UHGV-0082662_70	UniRef90_A0A355KVL2	361.0	0	DNA cytosine methyltransferase	N/A
eggNOG-mapper	UHGV-0082662_70	748224.HMPREF9436_03069	402.0	0	DNA (cytosine-5-)-methyltransferase activity	N/A
COG	UHGV-0082662_70	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0082662_70	PF00145,MF_01872,TIGR00675,COG0270	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0082662_73	445972.ANACOL_00166	109.0	4.07e-29	N/A	N/A
structural_annotation	UHGV-0082662_75	PF11417	N/A	N/A	N/A	N/A
KOfam	UHGV-0082662_76	K02086	65.6	8.5e-19	dnaD; DNA replication protein	N/A
PHROG	UHGV-0082662_76	phrog_186	71.3	2e-20	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0082662_76	1111454.HMPREF1250_0280	52.0	0.0000051	N/A	N/A
Pfam	UHGV-0082662_76	PF07261	N/A	N/A	Replication initiation and membrane attachment	DnaB_2
NCBIFam	UHGV-0082662_76	TIGR01446.1	N/A	N/A	DnaD domain protein	N/A
COG	UHGV-0082662_76	COG3935	N/A	N/A	DNA replication protein DnaD	N/A