UHGV-0082940 (vOTU-093892)

Viral Genome: UHGV-0082940

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0082940
vOTU ID	vOTU-093892
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_163844
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	54.74 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9794
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	32.27
Jumbo phage	No

Genome content
Genome length (bp)	18,875
GC content	39.93%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	41
CDS density	93%
Average CDS length (bps)	426.59
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 54.74)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0082940_1	phrog_6900	250.3	0	tail length tape measure protein	tail
UniRef90	UHGV-0082940_1	UniRef90_A0A1P8BMM1	201.0	0	Tail tapemeasure protein	N/A
eggNOG-mapper	UHGV-0082940_1	1280698.AUJS01000007_gene1047	270.0	0	nuclear chromosome segregation	N/A
COG	UHGV-0082940_1	COG1511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0082940_1	PF20155	N/A	N/A	N/A	N/A
PHROG	UHGV-0082940_2	phrog_1633	152.9	1.4013e-45	N/A	unknown function
UniRef90	UHGV-0082940_2	UniRef90_UPI00157064A0	160.0	0	N/A	N/A
eggNOG-mapper	UHGV-0082940_2	1280698.AUJS01000007_gene1046	136.0	7.68e-40	N/A	N/A
Pfam	UHGV-0082940_2	PF17318	N/A	N/A	N/A	DUF5361
structural_annotation	UHGV-0082940_2	PF17318	N/A	N/A	N/A	N/A
PHROG	UHGV-0082940_3	phrog_1526	85.3	5.4e-25	N/A	unknown function
eggNOG-mapper	UHGV-0082940_3	665950.HMPREF1025_02524	92.4	1.62e-23	N/A	N/A
PHROG	UHGV-0082940_4	phrog_117	171.6	0	major tail protein	tail
UniRef90	UHGV-0082940_4	UniRef90_UPI00156E6ACC	252.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-0082940_4	665950.HMPREF1025_02525	261.0	0	domain, Protein	N/A
COG	UHGV-0082940_4	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0082940_4	PF04630,TIGR01603,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0082940_5	phrog_123	63.8	3.1e-18	tail terminator	connector
eggNOG-mapper	UHGV-0082940_5	1280698.AUJS01000007_gene1043	137.0	1.26001e-40	N/A	N/A
structural_annotation	UHGV-0082940_5	PF06141	N/A	N/A	N/A	N/A
PHROG	UHGV-0082940_6	phrog_387	42.6	0.0000000000072	neck protein	connector
eggNOG-mapper	UHGV-0082940_6	1289597.M1PKU8_9CAUD	47.8	0.00000269	N/A	N/A
PHROG	UHGV-0082940_7	phrog_501	92.2	4.1e-27	head closure Hc1	connector
UniRef90	UHGV-0082940_7	UniRef90_A0A139NBR3	129.0	9.57e-37	Phage-associated protein	N/A
eggNOG-mapper	UHGV-0082940_7	1280698.AUJS01000007_gene1041	180.0	0	N/A	N/A
structural_annotation	UHGV-0082940_7	PF12206,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0082940_8	phrog_137	108.7	2.9e-32	head-tail adaptor Ad1	connector
UniRef90	UHGV-0082940_8	UniRef90_UPI0019617F49	177.0	0	phage Gp19/Gp15/Gp42 family protein	N/A
eggNOG-mapper	UHGV-0082940_8	1280698.AUJS01000007_gene1040	197.0	0	Phage protein Gp19/Gp15/Gp42	N/A
Pfam	UHGV-0082940_8	PF09355	N/A	N/A	N/A	Phage_Gp19
structural_annotation	UHGV-0082940_8	PF09355	N/A	N/A	N/A	N/A
PHROG	UHGV-0082940_10	phrog_32396	138.6	1.40004e-41	N/A	unknown function
UniRef90	UHGV-0082940_10	UniRef90_UPI001961D35B	464.0	0	phage major capsid protein	N/A
eggNOG-mapper	UHGV-0082940_10	1280698.AUJS01000007_gene1038	523.0	0	Phage capsid family	N/A
Pfam	UHGV-0082940_10	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
structural_annotation	UHGV-0082940_10	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0082940_11	phrog_233	104.7	3e-31	head scaffolding protein	head and packaging
UniRef90	UHGV-0082940_11	UniRef90_A0A0X8USY7	113.0	3.75e-29	Phage scaffold protein	N/A
eggNOG-mapper	UHGV-0082940_11	1280698.AUJS01000007_gene1037	226.0	0	N/A	N/A
Pfam	UHGV-0082940_11	PF14265	N/A	N/A	N/A	DUF4355
structural_annotation	UHGV-0082940_11	PF14265	N/A	N/A	N/A	N/A
PHROG	UHGV-0082940_12	phrog_17688	343.9	0	N/A	unknown function
UniRef90	UHGV-0082940_12	UniRef90_R6SFU1	844.0	0	Putative phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0082940_12	1280698.AUJS01000007_gene1036	840.0	0	phage terminase, large subunit	N/A
COG	UHGV-0082940_12	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0082940_12	PF20441,PF03354,MF_04146,NF033889,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0082940_13	phrog_37230	194.1	0	N/A	unknown function
PHROG	UHGV-0082940_14	phrog_2494	362.1	0	minor head protein	head and packaging
UniRef90	UHGV-0082940_14	UniRef90_UPI00156EC2C0	384.0	0	polymorphic toxin type 50 domain-containing protein	N/A
eggNOG-mapper	UHGV-0082940_14	1280698.AUJS01000007_gene1034	385.0	0	cell adhesion	N/A
COG	UHGV-0082940_14	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0082940_14	PF15542	N/A	N/A	N/A	N/A
PHROG	UHGV-0082940_15	phrog_104	277.4	0	portal protein	head and packaging
UniRef90	UHGV-0082940_15	UniRef90_UPI001A9C29A4	575.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0082940_15	1280698.AUJS01000007_gene1033	732.0	0	Phage portal protein, SPP1 Gp6-like	N/A
structural_annotation	UHGV-0082940_15	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
PHROG	UHGV-0082940_16	phrog_338	103.4	2.9e-30	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0082940_16	UniRef90_R6S8U5	221.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0082940_16	1280698.AUJS01000007_gene1032	220.0	0	HNH endonuclease domain protein	N/A
Pfam	UHGV-0082940_16	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0082940_16	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-0082940_16	PF01844,COG1403	N/A	N/A	N/A	N/A
PHROG	UHGV-0082940_17	phrog_36	85.3	7.2e-25	transcriptional regulator	transcription regulation
UniRef90	UHGV-0082940_17	UniRef90_A0A373STV4	241.0	0	N/A	N/A
eggNOG-mapper	UHGV-0082940_17	411461.DORFOR_00754	155.0	0	sigma factor activity	N/A
COG	UHGV-0082940_17	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
structural_annotation	UHGV-0082940_17	PF07374,MF_00674,NF007227,COG1342	N/A	N/A	N/A	N/A
PHROG	UHGV-0082940_19	phrog_599	43.9	0.0000000000048	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0082940_19	UniRef90_UPI001D03C0B1	200.0	0	Lar family restriction alleviation protein	N/A
Pfam	UHGV-0082940_19	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
PHROG	UHGV-0082940_21	phrog_20593	49.5	0.000000000000055	N/A	unknown function
UniRef90	UHGV-0082940_21	UniRef90_UPI001C00E342	59.3	0.00000000803	N/A	N/A
AcrCatalog	UHGV-0082940_21	cluster_27421	32.7	0.000156	NA	N/A
PHROG	UHGV-0082940_22	phrog_22292	109.3	2.8e-32	N/A	unknown function
PHROG	UHGV-0082940_23	phrog_15198	44.7	0.0000000000014	N/A	unknown function
UniRef90	UHGV-0082940_23	UniRef90_UPI0015715EFA	176.0	0	N/A	N/A
eggNOG-mapper	UHGV-0082940_23	411462.DORLON_00804	109.0	7.33e-30	N/A	N/A
Pfam	UHGV-0082940_23	PF04448	N/A	N/A	N/A	DUF551
PHROG	UHGV-0082940_25	phrog_10469	109.8	9.7e-34	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0082940_25	UniRef90_A0A174WT25	179.0	0	Replication initiator A domain-containing protein	N/A
eggNOG-mapper	UHGV-0082940_25	742733.HMPREF9469_01845	160.0	1.4013e-45	N/A	N/A
structural_annotation	UHGV-0082940_25	PF10771,MF_01177,TIGR01714,COG5529	N/A	N/A	N/A	N/A
PHROG	UHGV-0082940_26	phrog_244	73.2	4.9e-21	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0082940_26	33035.JPJF01000122_gene2460	150.0	1.4013e-45	N/A	N/A
structural_annotation	UHGV-0082940_26	PF01870,MF_01490,NF040854,COG1591	N/A	N/A	N/A	N/A
PHROG	UHGV-0082940_27	phrog_2113	45.5	0.00000000000087	N/A	unknown function
PHROG	UHGV-0082940_28	phrog_7566	82.1	4.9e-24	N/A	unknown function
UniRef90	UHGV-0082940_28	UniRef90_A0A415D793	188.0	0	Phosphoenolpyruvate carboxykinase	N/A
eggNOG-mapper	UHGV-0082940_28	1304866.K413DRAFT_1198	70.9	0.0000000000000079	N/A	N/A
PHROG	UHGV-0082940_29	phrog_72	49.3	0.000000000000048	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0082940_29	411470.RUMGNA_02194	132.0	1.65e-36	N/A	N/A
structural_annotation	UHGV-0082940_29	PF05772,NF007281	N/A	N/A	N/A	N/A
PHROG	UHGV-0082940_30	phrog_659	53.0	0.0000000000000043	Sak-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0082940_30	UniRef90_A0A415D765	422.0	0	N/A	N/A
eggNOG-mapper	UHGV-0082940_30	33035.JPJF01000135_gene5082	269.0	0	N/A	N/A
Pfam	UHGV-0082940_30	PF06378	N/A	N/A	N/A	DUF1071
structural_annotation	UHGV-0082940_30	PF06378,TIGR00607,COG5055	N/A	N/A	N/A	N/A
PHROG	UHGV-0082940_31	phrog_30234	59.0	4.1e-18	N/A	unknown function
eggNOG-mapper	UHGV-0082940_31	33035.JPJF01000071_gene4461	85.1	1.81e-21	N/A	N/A
PHROG	UHGV-0082940_36	phrog_9607	68.9	8.6e-20	N/A	unknown function
eggNOG-mapper	UHGV-0082940_36	1304866.K413DRAFT_4791	57.8	0.0000000778	N/A	N/A
structural_annotation	UHGV-0082940_36	PF02883,MF_00791,NF012200,COG3354	N/A	N/A	N/A	N/A
KOfam	UHGV-0082940_38	K18830	80.8	2.1e-23	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-0082940_38	phrog_4	57.7	1.5e-16	transcriptional repressor	transcription regulation
UniRef90	UHGV-0082940_38	UniRef90_A0A7X5EGQ0	197.0	0	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0082940_38	1235792.C808_00054	156.0	0	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0082940_38	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0082940_38	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0082940_38	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0082940_40	K23779	51.3	0.000000000000028	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	N/A
PHROG	UHGV-0082940_40	phrog_3	41.3	0.000000000057	transcriptional repressor	transcription regulation
UniRef90	UHGV-0082940_40	UniRef90_A0A415D7E2	124.0	4.61e-36	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0082940_40	411461.DORFOR_01128	82.8	2.34e-20	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-0082940_40	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-0082940_40	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A