UHGV-0083176 (vOTU-156406)

Viral Genome: UHGV-0083176

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0083176
vOTU ID	vOTU-156406
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_150756
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	79.22 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9772
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	50.41
Jumbo phage	No

Genome content
Genome length (bp)	29,922
GC content	50.66%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	45
CDS density	93%
Average CDS length (bps)	617.20
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 79.22)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0083176_1	K14059	148.3	9.94922e-44	int; integrase	N/A
PHROG	UHGV-0083176_1	phrog_1	181.8	0	integrase	integration and excision
UniRef90	UHGV-0083176_1	UniRef90_A0A7K4BXA9	279.0	0	Site-specific integrase	N/A
eggNOG-mapper	UHGV-0083176_1	693746.OBV_19730	237.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0083176_1	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0083176_1	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0083176_1	PF00589,MF_01807,TIGR02224,COG4973	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0083176_2	411470.RUMGNA_02091	57.8	0.000000103	N/A	N/A
PHROG	UHGV-0083176_3	phrog_87	78.4	7.6e-23	metallo-protease	other
UniRef90	UHGV-0083176_3	UniRef90_A0A1Y4S739	152.0	8.40779e-45	Peptidase_M78 domain-containing protein	N/A
eggNOG-mapper	UHGV-0083176_3	1507.HMPREF0262_00423	132.0	1.39e-37	IrrE N-terminal-like domain	N/A
Pfam	UHGV-0083176_3	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
COG	UHGV-0083176_3	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-0083176_3	PF06114,COG2856	N/A	N/A	N/A	N/A
KOfam	UHGV-0083176_4	K07729	60.7	3.3e-17	K07729; putative transcriptional regulator	N/A
PHROG	UHGV-0083176_4	phrog_8	58.2	2.2e-16	transcriptional regulator	transcription regulation
UniRef90	UHGV-0083176_4	UniRef90_A0A3D5TL51	218.0	0	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0083176_4	445972.ANACOL_01759	75.9	2.59e-16	sequence-specific DNA binding	N/A
Pfam	UHGV-0083176_4	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0083176_4	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0083176_4	PF12844,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0083176_5	K07729	50.4	0.000000000000054	K07729; putative transcriptional regulator	N/A
PHROG	UHGV-0083176_5	phrog_8	40.5	0.000000000052	transcriptional regulator	transcription regulation
UniRef90	UHGV-0083176_5	UniRef90_A0A3D5TL86	144.0	1.41531e-43	Transcriptional regulator	N/A
eggNOG-mapper	UHGV-0083176_5	718252.FP2_16270	67.8	0.0000000000000645	sequence-specific DNA binding	N/A
Pfam	UHGV-0083176_5	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0083176_5	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0083176_5	PF12844,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0083176_6	phrog_6058	44.9	0.0000000000014	N/A	unknown function
eggNOG-mapper	UHGV-0083176_6	693746.OBV_19810	52.0	0.000000309	N/A	N/A
KOfam	UHGV-0083176_9	K01449	59.6	2.6e-17	cwlJ, sleB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0083176_9	phrog_18750	147.5	8.12753e-44	N/A	unknown function
UniRef90	UHGV-0083176_9	UniRef90_A0A3D5TM41	332.0	0	Hydrolase_2 domain-containing protein	N/A
eggNOG-mapper	UHGV-0083176_9	552398.HMPREF0866_01639	142.0	3.64e-40	Cell wall hydrolase	N/A
Pfam	UHGV-0083176_9	PF07486	N/A	N/A	Cell Wall Hydrolase	Hydrolase_2
COG	UHGV-0083176_9	COG3773	N/A	N/A	Cell wall hydrolase CwlJ, involved in spore germination	N/A
structural_annotation	UHGV-0083176_9	PF07486,TIGR02869,COG3773	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0083176_11	PF07073,COG4568	N/A	N/A	N/A	N/A
PHROG	UHGV-0083176_15	phrog_824	131.7	2.5e-39	N/A	unknown function
UniRef90	UHGV-0083176_15	UniRef90_A0A3D5TLJ2	362.0	0	VRR-NUC domain-containing protein	N/A
eggNOG-mapper	UHGV-0083176_15	1235792.C808_00075	137.0	9.13e-38	VRR_NUC	N/A
Pfam	UHGV-0083176_15	PF08774	N/A	N/A	VRR-NUC domain	VRR_NUC
structural_annotation	UHGV-0083176_15	PF08774,COG1996	N/A	N/A	N/A	N/A
Pfam	UHGV-0083176_16	PF14058	N/A	N/A	PcfK-like protein	PcfK
PHROG	UHGV-0083176_17	phrog_8470	307.3	0	N/A	unknown function
UniRef90	UHGV-0083176_17	UniRef90_A0A238ZSA1	202.0	0	PcfJ-like protein	N/A
eggNOG-mapper	UHGV-0083176_17	1117108.PAALTS15_13637	187.0	0	PcfJ-like protein	N/A
Pfam	UHGV-0083176_17	PF14284	N/A	N/A	PcfJ-like protein	PcfJ
structural_annotation	UHGV-0083176_17	PF14284	N/A	N/A	N/A	N/A
PHROG	UHGV-0083176_18	phrog_15609	140.7	9.80068e-42	N/A	unknown function
eggNOG-mapper	UHGV-0083176_18	641112.ACOK01000073_gene2872	70.5	0.00000000004	N/A	N/A
Pfam	UHGV-0083176_18	PF11300	N/A	N/A	N/A	DUF3102
structural_annotation	UHGV-0083176_18	PF11300,NF038070	N/A	N/A	N/A	N/A
KOfam	UHGV-0083176_19	K18831	46.7	0.0000000000007	higA; HTH-type transcriptional regulator / antitoxin HigA	N/A
PHROG	UHGV-0083176_19	phrog_8	52.6	0.000000000000011	transcriptional regulator	transcription regulation
eggNOG-mapper	UHGV-0083176_19	537013.CLOSTMETH_02010	73.6	0.000000000000461	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0083176_19	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0083176_19	PF01381,MF_00535,NF007257,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0083176_23	phrog_24518	40.9	0.000000000027	N/A	unknown function
eggNOG-mapper	UHGV-0083176_23	1519439.JPJG01000077_gene922	68.9	0.00000000000843	N/A	N/A
PHROG	UHGV-0083176_24	phrog_3584	129.7	1.9e-38	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0083176_24	537013.CLOSTMETH_02141	79.7	0.00000000000000165	N/A	N/A
structural_annotation	UHGV-0083176_24	PF21578,MF_00360	N/A	N/A	N/A	N/A
PHROG	UHGV-0083176_26	phrog_8684	86.5	3.2e-26	N/A	unknown function
UniRef90	UHGV-0083176_26	UniRef90_A0A1C6E8F9	95.9	5.73e-23	YopX protein	N/A
eggNOG-mapper	UHGV-0083176_26	742767.HMPREF9456_02048	84.7	3.13e-19	YopX protein	N/A
Pfam	UHGV-0083176_26	PF09643	N/A	N/A	YopX protein	YopX
NCBIFam	UHGV-0083176_26	TIGR01671.1	N/A	N/A	phage conserved hypothetical protein TIGR01671	N/A
structural_annotation	UHGV-0083176_26	PF09643,TIGR01671	N/A	N/A	N/A	N/A
PHROG	UHGV-0083176_27	phrog_11237	79.0	6.2e-23	N/A	unknown function
eggNOG-mapper	UHGV-0083176_27	537013.CLOSTMETH_01096	59.7	0.00000000106	N/A	N/A
structural_annotation	UHGV-0083176_27	TIGR01636	N/A	N/A	N/A	N/A
KOfam	UHGV-0083176_28	K00571	157.2	0	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-0083176_28	phrog_12862	163.3	0	N/A	unknown function
UniRef90	UHGV-0083176_28	UniRef90_UPI000A26DFF4	327.0	0	site-specific DNA-methyltransferase	N/A
eggNOG-mapper	UHGV-0083176_28	1120998.AUFC01000030_gene2227	314.0	0	Belongs to the N(4) N(6)-methyltransferase family	N/A
PADLOC	UHGV-0083176_28	MTase_II_00037	142.2	0	Type II methyltransferase	RM
Pfam	UHGV-0083176_28	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-0083176_28	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-0083176_28	PF01555,MF_01872,NF008572,COG0863	N/A	N/A	N/A	N/A
KOfam	UHGV-0083176_29	K07451	45.9	0.00000000000097	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	N/A
PHROG	UHGV-0083176_29	phrog_144	100.8	1.2e-29	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0083176_29	UniRef90_UPI0006D7C695	94.7	2.2e-22	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0083176_29	1508644.SFBmNL_01550	94.4	3.12e-23	HNH endonuclease	N/A
Pfam	UHGV-0083176_29	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0083176_29	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-0083176_29	PF05766	N/A	N/A	N/A	N/A
PHROG	UHGV-0083176_30	phrog_83	90.8	1.7e-26	terminase small subunit	head and packaging
UniRef90	UHGV-0083176_30	UniRef90_A0A0A7S0C4	136.0	3.01e-38	p27 family terminase small subunit	N/A
eggNOG-mapper	UHGV-0083176_30	1567013.A0A0A7S0C4_9CAUD	136.0	5.04e-39	Phage terminase, small subunit	N/A
Pfam	UHGV-0083176_30	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
NCBIFam	UHGV-0083176_30	TIGR01558.1	N/A	N/A	phage terminase small subunit P27 family	N/A
structural_annotation	UHGV-0083176_30	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-0083176_31	phrog_9	318.3	0	terminase large subunit	head and packaging
UniRef90	UHGV-0083176_31	UniRef90_UPI000C7CE66A	712.0	0	terminase large subunit	N/A
eggNOG-mapper	UHGV-0083176_31	742738.HMPREF9460_04067	649.0	0	Phage terminase-like protein large subunit	N/A
Pfam	UHGV-0083176_31	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0083176_31	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0083176_31	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0083176_31	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0083176_32	phrog_12	272.1	0	portal protein	head and packaging
UniRef90	UHGV-0083176_32	UniRef90_UPI001C11FE4E	491.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0083176_32	634956.Geoth_0787	435.0	0	Phage portal protein	N/A
Pfam	UHGV-0083176_32	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0083176_32	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0083176_32	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0083176_32	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-0083176_33	phrog_16951	255.9	0	N/A	unknown function
eggNOG-mapper	UHGV-0083176_33	246199.CUS_7602	191.0	0	N/A	N/A
structural_annotation	UHGV-0083176_33	PF04586,TIGR01543,COG3740	N/A	N/A	N/A	N/A
PHROG	UHGV-0083176_34	phrog_10	158.0	0	major head protein	head and packaging
UniRef90	UHGV-0083176_34	UniRef90_UPI000C7BECD8	320.0	0	phage major capsid protein	N/A
eggNOG-mapper	UHGV-0083176_34	1414720.CBYM010000002_gene572	234.0	0	Phage major capsid protein, HK97 family	N/A
Pfam	UHGV-0083176_34	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0083176_34	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0083176_34	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0083176_34	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0083176_35	phrog_40	40.2	0.00000000005	head-tail adaptor Ad1	connector
UniRef90	UHGV-0083176_35	UniRef90_UPI0006544DF9	53.9	0.000000168	head-tail connector protein	N/A
eggNOG-mapper	UHGV-0083176_35	1274524.BSONL12_06143	48.5	0.00000567	Phage gp6-like head-tail connector protein	N/A
Pfam	UHGV-0083176_35	PF05135	N/A	N/A	Phage gp6-like head-tail connector protein	Phage_connect_1
NCBIFam	UHGV-0083176_35	TIGR01560.2	N/A	N/A	head-tail connector protein	N/A
structural_annotation	UHGV-0083176_35	PF05135,TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-0083176_36	phrog_1951	48.4	0.00000000000017	head-tail adaptor	connector
eggNOG-mapper	UHGV-0083176_36	457396.CSBG_01051	49.7	0.00000249	head-tail adaptor	N/A
Pfam	UHGV-0083176_36	PF05521	N/A	N/A	Phage head-tail joining protein	Phage_H_T_join
COG	UHGV-0083176_36	COG5614	N/A	N/A	Phage head-tail adaptor	N/A
PHROG	UHGV-0083176_37	phrog_5	45.7	0.0000000000012	tail completion or Neck1 protein	connector
UniRef90	UHGV-0083176_37	UniRef90_A0A174CK72	94.4	6.11e-22	Phage protein, HK97 gp10 family	N/A
eggNOG-mapper	UHGV-0083176_37	411459.RUMOBE_00932	82.8	2.73e-18	Phage protein, HK97 gp10 family	N/A
structural_annotation	UHGV-0083176_37	TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-0083176_38	phrog_78	51.7	0.000000000000017	tail terminator	connector
eggNOG-mapper	UHGV-0083176_38	1238184.CM001792_gene2512	73.2	0.00000000000000286	N/A	N/A
structural_annotation	UHGV-0083176_38	PF05657,NF040576,COG3167	N/A	N/A	N/A	N/A
PHROG	UHGV-0083176_39	phrog_88	79.5	4.3e-23	major tail protein	tail
UniRef90	UHGV-0083176_39	UniRef90_UPI001D07B441	135.0	5.9e-37	major tail protein	N/A
eggNOG-mapper	UHGV-0083176_39	411459.RUMOBE_00930	124.0	3.49e-33	N/A	N/A
NCBIFam	UHGV-0083176_39	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-0083176_39	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0083176_40	PF11836	N/A	N/A	N/A	N/A
PHROG	UHGV-0083176_41	phrog_58	99.9	1.6e-32	tail length tape measure protein	tail
UniRef90	UHGV-0083176_41	UniRef90_A0A316QKN8	291.0	0	Phage tail protein (Fragment)	N/A
eggNOG-mapper	UHGV-0083176_41	1216932.CM240_1382	269.0	0	tape measure	N/A
COG	UHGV-0083176_41	COG5185	N/A	N/A	Chromosome segregation protein NDC80, interacts with SMC proteins	N/A
structural_annotation	UHGV-0083176_41	PF05537,MF_04138,COG5281	N/A	N/A	N/A	N/A
PHROG	UHGV-0083176_42	phrog_33	68.1	2.3e-19	distal tail protein Dit	tail
UniRef90	UHGV-0083176_42	UniRef90_UPI00164BA811	144.0	3.43e-39	phage tail family protein	N/A
eggNOG-mapper	UHGV-0083176_42	1444306.JFZC01000034_gene2623	144.0	7.69e-40	tail component	N/A
COG	UHGV-0083176_42	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0083176_42	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0083176_43	phrog_1067	370.2	0	minor head protein	head and packaging
UniRef90	UHGV-0083176_43	UniRef90_A0A1C6H6B4	348.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0083176_43	1160721.RBI_I01574	332.0	0	Prophage endopeptidase tail	N/A
Pfam	UHGV-0083176_43	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0083176_43	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0083176_43	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0083176_43	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0083176_45	PF10651,NF009453	N/A	N/A	N/A	N/A