UHGV-0083303 (vOTU-035023)

Viral Genome: UHGV-0083303

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0083303
vOTU ID	vOTU-035023
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_155649
Associated BioSample	SAMEA2784486
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	86.81 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9638
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	23.18
Jumbo phage	No

Genome content
Genome length (bp)	32,380
GC content	47.54%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	56
CDS density	88%
Average CDS length (bps)	511.55
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 86.81)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0083303_1	phrog_5110	72.6	4.2e-21	terminase small subunit	head and packaging
UniRef90	UHGV-0083303_1	UniRef90_UPI00195E8788	96.3	2.35e-23	P27 family phage terminase small subunit	N/A
eggNOG-mapper	UHGV-0083303_1	349161.Dred_2608	85.1	6.76e-20	N/A	N/A
Pfam	UHGV-0083303_1	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
structural_annotation	UHGV-0083303_1	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-0083303_2	phrog_9	262.1	0	terminase large subunit	head and packaging
UniRef90	UHGV-0083303_2	UniRef90_A0A1C6FFC9	892.0	0	Phage terminase-like protein, large subunit	N/A
eggNOG-mapper	UHGV-0083303_2	1235792.C808_00083	617.0	0	Phage terminase-like protein large subunit	N/A
Pfam	UHGV-0083303_2	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0083303_2	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0083303_2	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0083303_2	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0083303_3	phrog_12	127.7	7.8e-38	portal protein	head and packaging
UniRef90	UHGV-0083303_3	UniRef90_G9YSB8	508.0	0	Phage portal protein, HK97 family	N/A
eggNOG-mapper	UHGV-0083303_3	349161.Dred_2606	319.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-0083303_3	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0083303_3	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0083303_3	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0083303_3	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-0083303_4	K01358	134.1	1.4e-39	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0083303_4	phrog_94	249.2	0	head maturation protease	head and packaging
UniRef90	UHGV-0083303_4	UniRef90_A0A1C6FFN6	343.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-0083303_4	349161.Dred_2605	288.0	0	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-0083303_4	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0083303_4	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-0083303_4	PF00574,MF_00444,TIGR00493,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-0083303_5	phrog_10	147.3	1.59748e-43	major head protein	head and packaging
UniRef90	UHGV-0083303_5	UniRef90_UPI0018757887	629.0	0	phage major capsid protein	N/A
eggNOG-mapper	UHGV-0083303_5	1235792.C808_00086	446.0	0	Phage capsid family	N/A
Pfam	UHGV-0083303_5	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
Pfam	UHGV-0083303_5	PF12733	N/A	N/A	Cadherin-like beta sandwich domain	Cadherin-like
NCBIFam	UHGV-0083303_5	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0083303_5	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0083303_5	PF05065,PF12733,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0083303_6	phrog_749	73.8	1.8e-21	N/A	unknown function
UniRef90	UHGV-0083303_6	UniRef90_A0A371IJS1	67.8	0.00000000000117	Phage gp6-like head-tail connector protein	N/A
eggNOG-mapper	UHGV-0083303_6	349161.Dred_2603	97.8	4.14e-25	N/A	N/A
PHROG	UHGV-0083303_7	phrog_19734	119.0	2.6e-35	N/A	unknown function
UniRef90	UHGV-0083303_7	UniRef90_A0A6I7GNS7	123.0	1.3e-33	Phage head closure protein	N/A
eggNOG-mapper	UHGV-0083303_7	349161.Dred_2602	90.9	6.18e-22	N/A	N/A
Pfam	UHGV-0083303_7	PF05521	N/A	N/A	Phage head-tail joining protein	Phage_H_T_join
NCBIFam	UHGV-0083303_7	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
structural_annotation	UHGV-0083303_7	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0083303_8	1235798.C817_04588	90.9	2.25e-22	N/A	N/A
structural_annotation	UHGV-0083303_8	PF05657,COG3167	N/A	N/A	N/A	N/A
PHROG	UHGV-0083303_9	phrog_5	58.2	2.1e-16	tail completion or Neck1 protein	connector
UniRef90	UHGV-0083303_9	UniRef90_R6UNR2	113.0	5.2e-29	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0083303_9	908340.HMPREF9406_2573	113.0	8.72e-30	N/A	N/A
structural_annotation	UHGV-0083303_9	TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-0083303_10	phrog_88	107.5	1e-31	major tail protein	tail
UniRef90	UHGV-0083303_10	UniRef90_G9YSC5	268.0	0	Phage major tail protein, phi13 family	N/A
eggNOG-mapper	UHGV-0083303_10	1195236.CTER_5106	101.0	4.14e-24	phage major tail protein, phi13 family	N/A
NCBIFam	UHGV-0083303_10	TIGR01603.1	N/A	N/A	major tail protein	N/A
COG	UHGV-0083303_10	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0083303_10	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0083303_11	PF11836	N/A	N/A	N/A	N/A
PHROG	UHGV-0083303_13	phrog_8462	150.9	1.26117e-44	tail length tape measure protein	tail
UniRef90	UHGV-0083303_13	UniRef90_UPI00189A2A14	181.0	9.80909e-45	phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-0083303_13	1291050.JAGE01000001_gene447	235.0	0	tape measure	N/A
COG	UHGV-0083303_13	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-0083303_13	COG5280	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0083303_14	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0083303_15	phrog_13879	218.1	0	N/A	unknown function
eggNOG-mapper	UHGV-0083303_15	324057.Pjdr2_1554	148.0	4.37e-36	N/A	N/A
structural_annotation	UHGV-0083303_15	PF14594,PF03256,NF033848,COG4379,COG5156	N/A	N/A	N/A	N/A
PHROG	UHGV-0083303_16	phrog_18725	48.0	6.4e-19	N/A	unknown function
eggNOG-mapper	UHGV-0083303_16	1226322.HMPREF1545_00062	112.0	4.95e-29	N/A	N/A
structural_annotation	UHGV-0083303_17	PF09826,MF_03001,TIGR04528,COG2706	N/A	N/A	N/A	N/A
UniRef90	UHGV-0083303_19	UniRef90_R6I1X1	89.0	3.98e-20	COPII coat assembly protein SEC16 (Protein transport protein SEC16)	N/A
eggNOG-mapper	UHGV-0083303_19	1232449.BAHV02000010_gene2734	82.0	7.59e-18	N/A	N/A
structural_annotation	UHGV-0083303_20	PF07328,NF001949	N/A	N/A	N/A	N/A
PHROG	UHGV-0083303_21	phrog_881	80.8	1e-23	holin	lysis
UniRef90	UHGV-0083303_21	UniRef90_UPI00189D3A4F	91.3	8.99e-23	phage holin	N/A
eggNOG-mapper	UHGV-0083303_21	742740.HMPREF9474_02251	85.5	3.24e-21	Putative phage holin Dp-1	N/A
Pfam	UHGV-0083303_21	PF16938	N/A	N/A	Putative phage holin Dp-1	Phage_holin_Dp1
structural_annotation	UHGV-0083303_21	PF16938,COG3237	N/A	N/A	N/A	N/A
KOfam	UHGV-0083303_22	K01447	71.4	1.7e-20	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0083303_22	phrog_15001	183.0	0	endolysin	lysis
UniRef90	UHGV-0083303_22	UniRef90_A0A416QZJ4	286.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-0083303_22	1216932.CM240_1376	282.0	0	Sporulation related domain	N/A
Pfam	UHGV-0083303_22	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
COG	UHGV-0083303_22	COG5632	N/A	N/A	N-acetylmuramoyl-L-alanine amidase CwlA	N/A
structural_annotation	UHGV-0083303_22	PF01510,MF_04111,COG5632	N/A	N/A	N/A	N/A
UniRef90	UHGV-0083303_23	UniRef90_A0A1Q6RP25	87.0	1.36e-20	HTH cro/C1-type domain-containing protein	N/A
Pfam	UHGV-0083303_23	PF12844	N/A	N/A	Helix-turn-helix domain	HTH_19
KOfam	UHGV-0083303_24	K14059	108.6	9.4e-32	int; integrase	N/A
PHROG	UHGV-0083303_24	phrog_1	122.2	5.8e-36	integrase	integration and excision
UniRef90	UHGV-0083303_24	UniRef90_UPI001C03825E	246.0	0	site-specific integrase	N/A
eggNOG-mapper	UHGV-0083303_24	1514668.JOOA01000001_gene242	116.0	8.12e-27	Phage integrase family	N/A
Pfam	UHGV-0083303_24	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0083303_24	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0083303_24	PF00589,PF12167,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A
UniRef90	UHGV-0083303_25	UniRef90_UPI0008F92EE3	149.0	2.8026e-45	type II toxin-antitoxin system Phd/YefM family antitoxin	N/A
eggNOG-mapper	UHGV-0083303_25	1232443.BAIA02000173_gene3696	149.0	1.4013e-45	Antitoxin component of a toxin-antitoxin (TA) module	N/A
Pfam	UHGV-0083303_25	PF02604	N/A	N/A	Antitoxin Phd_YefM, type II toxin-antitoxin system	PhdYeFM_antitox
NCBIFam	UHGV-0083303_25	TIGR01552.1	N/A	N/A	type II toxin-antitoxin system prevent-host-death family antitoxin	N/A
COG	UHGV-0083303_25	COG4118	N/A	N/A	Antitoxin component of toxin-antitoxin stability system, DNA-binding transcriptional repressor	N/A
KOfam	UHGV-0083303_26	K07063	90.0	3.4e-26	N/A	N/A
UniRef90	UHGV-0083303_26	UniRef90_UPI0008F89376	188.0	0	putative toxin-antitoxin system toxin component, PIN family	N/A
eggNOG-mapper	UHGV-0083303_26	478749.BRYFOR_05441	140.0	2.76995e-41	PIN domain	N/A
Pfam	UHGV-0083303_26	PF13470	N/A	N/A	PIN domain	PIN_3
NCBIFam	UHGV-0083303_26	TIGR00305.1	N/A	N/A	putative toxin-antitoxin system toxin component, PIN family	N/A
COG	UHGV-0083303_26	COG1569	N/A	N/A	Predicted nucleic acid-binding protein, contains PIN domain	N/A
PHROG	UHGV-0083303_27	phrog_17982	232.0	0	N/A	unknown function
UniRef90	UHGV-0083303_27	UniRef90_A0A2K2FA90	430.0	0	N/A	N/A
eggNOG-mapper	UHGV-0083303_27	720554.Clocl_1541	409.0	0	N/A	N/A
Pfam	UHGV-0083303_27	PF14020	N/A	N/A	N/A	DUF4236
structural_annotation	UHGV-0083303_27	PF14020	N/A	N/A	N/A	N/A
KOfam	UHGV-0083303_28	K07729	40.0	0.000000000079	K07729; putative transcriptional regulator	N/A
UniRef90	UHGV-0083303_28	UniRef90_UPI000F633619	50.4	0.000000487	helix-turn-helix domain-containing protein	N/A
Pfam	UHGV-0083303_28	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0083303_28	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
PHROG	UHGV-0083303_29	phrog_8	42.6	0.000000000014	transcriptional regulator	transcription regulation
UniRef90	UHGV-0083303_29	UniRef90_UPI001D05D211	113.0	3.34e-30	helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-0083303_29	610130.Closa_1361	53.1	0.000000278	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0083303_29	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0083303_29	COG3093	N/A	N/A	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	N/A
structural_annotation	UHGV-0083303_29	PF12844,NF041951,COG1396	N/A	N/A	N/A	N/A
UniRef90	UHGV-0083303_30	UniRef90_UPI00164C60EE	92.0	3.16e-23	helix-turn-helix domain-containing protein	N/A
structural_annotation	UHGV-0083303_30	PF13560,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0083303_38	phrog_14970	245.3	0	N/A	unknown function
UniRef90	UHGV-0083303_38	UniRef90_A0A3P6JH63	183.0	0	Essential recombination function protein	N/A
eggNOG-mapper	UHGV-0083303_38	642492.Clole_0944	181.0	0	double-strand break repair protein	N/A
Pfam	UHGV-0083303_38	PF04098	N/A	N/A	Rad52/22 family double-strand break repair protein	Rad52_Rad22
COG	UHGV-0083303_38	COG4712	N/A	N/A	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	N/A
structural_annotation	UHGV-0083303_38	PF04098,TIGR00607,COG4712	N/A	N/A	N/A	N/A
PHROG	UHGV-0083303_39	phrog_398	170.8	0	N/A	unknown function
UniRef90	UHGV-0083303_39	UniRef90_UPI00137B6F1E	347.0	0	putative HNHc nuclease	N/A
eggNOG-mapper	UHGV-0083303_39	1485543.JMME01000021_gene802	179.0	0	Putative HNHc nuclease	N/A
Pfam	UHGV-0083303_39	PF16784	N/A	N/A	Putative HNHc nuclease	HNHc_6
structural_annotation	UHGV-0083303_39	PF16784	N/A	N/A	N/A	N/A
UniRef90	UHGV-0083303_40	UniRef90_A0A847W0Y2	77.8	1.18e-16	HTH domain-containing protein	N/A
structural_annotation	UHGV-0083303_40	PF21715,TIGR00122,COG1654	N/A	N/A	N/A	N/A
PHROG	UHGV-0083303_41	phrog_16304	121.6	6.1e-36	N/A	unknown function
UniRef90	UHGV-0083303_41	UniRef90_U2R397	179.0	0	N/A	N/A
eggNOG-mapper	UHGV-0083303_41	1226322.HMPREF1545_00016	179.0	0	HNH endonuclease	N/A
AcrCatalog	UHGV-0083303_41	cluster_38323	80.9	2.3e-20	NA	N/A
Pfam	UHGV-0083303_41	PF19808	N/A	N/A	N/A	DUF6291
COG	UHGV-0083303_41	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-0083303_41	PF19808	N/A	N/A	N/A	N/A
KOfam	UHGV-0083303_42	K03111	142.9	3.50044e-42	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0083303_42	phrog_44	141.3	5.29971e-42	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0083303_42	UniRef90_A0A810QFR8	176.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0083303_42	693746.OBV_19910	170.0	0	Single-strand binding protein family	N/A
Pfam	UHGV-0083303_42	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0083303_42	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0083303_42	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0083303_42	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0083303_42	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
KOfam	UHGV-0083303_43	K01160	47.2	0.00000000000055	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0083303_43	phrog_4632	47.1	0.000000000000028	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0083303_43	UniRef90_A0A1V5ZUM0	118.0	1.65e-31	Endodeoxyribonuclease RusA	N/A
eggNOG-mapper	UHGV-0083303_43	469604.HMPREF0946_01097	71.6	0.0000000000000254	N/A	N/A
structural_annotation	UHGV-0083303_43	PF19595,NF007305,COG4570	N/A	N/A	N/A	N/A
KOfam	UHGV-0083303_46	K01449	46.9	0.0000000000005	cwlJ, sleB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0083303_46	phrog_30550	182.8	0	N/A	unknown function
UniRef90	UHGV-0083303_46	UniRef90_A0A6N9PV97	155.0	8.40779e-45	Hydrolase_2 domain-containing protein	N/A
eggNOG-mapper	UHGV-0083303_46	1519439.JPJG01000077_gene920	125.0	3.6e-35	Cell Wall Hydrolase	N/A
PHROG	UHGV-0083303_48	phrog_14105	58.2	2.7e-19	N/A	unknown function
eggNOG-mapper	UHGV-0083303_48	268407.PWYN_12330	61.2	0.0000000444	dextransucrase activity	N/A
COG	UHGV-0083303_48	COG5263	N/A	N/A	Glucan-binding domain (YG repeat)	N/A
KOfam	UHGV-0083303_51	K22300	41.9	0.000000000021	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
UniRef90	UHGV-0083303_51	UniRef90_A0A1U7MGI4	49.3	0.00000525	HTH-type transcriptional regulator Xre	N/A
Pfam	UHGV-0083303_51	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0083303_51	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
PHROG	UHGV-0083303_54	phrog_248	44.5	0.0000000000029	transcriptional activator	transcription regulation
eggNOG-mapper	UHGV-0083303_54	580331.Thit_1400	78.6	1.74e-16	N/A	N/A
structural_annotation	UHGV-0083303_54	PF07374,TIGR01636	N/A	N/A	N/A	N/A
PHROG	UHGV-0083303_56	phrog_119	68.4	1.2e-19	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0083303_56	UniRef90_G9YSB5	125.0	3.75e-35	HNH domain-containing protein	N/A
eggNOG-mapper	UHGV-0083303_56	926561.KB900623_gene763	96.3	2.84e-24	HNH nucleases	N/A
Pfam	UHGV-0083303_56	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0083303_56	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A