UHGV-0083927 (vOTU-112244)

Viral Genome: UHGV-0083927

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0083927
vOTU ID	vOTU-112244
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_147947
Associated BioSample	SAMEA2784497
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	51.77 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	9
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9734
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	27.75
Jumbo phage	No

Genome content
Genome length (bp)	21,307
GC content	44.80%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	38
CDS density	94%
Average CDS length (bps)	529.82
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 51.77)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0083927_1	K06400	157.5	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0083927_1	phrog_95	160.9	0	integrase	integration and excision
UniRef90	UHGV-0083927_1	UniRef90_K1SIM9	363.0	0	Site-specific recombinase (Fragment)	N/A
eggNOG-mapper	UHGV-0083927_1	697281.Mahau_2563	382.0	0	resolvase	N/A
Pfam	UHGV-0083927_1	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0083927_1	PF07508	N/A	N/A	Recombinase	Recombinase
COG	UHGV-0083927_1	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0083927_1	PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A
KOfam	UHGV-0083927_2	K07504	421.9	0	K07504; predicted type IV restriction endonuclease	N/A
PHROG	UHGV-0083927_2	phrog_4225	455.7	0	endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0083927_2	UniRef90_A0A2N2BUK5	421.0	0	Endonuclease	N/A
eggNOG-mapper	UHGV-0083927_2	1511.CLOST_1563	414.0	0	Type I restriction enzyme R protein N terminus (HSDR_N)	N/A
Pfam	UHGV-0083927_2	PF04313	N/A	N/A	Type I restriction enzyme R protein N terminus (HSDR_N)	HSDR_N
COG	UHGV-0083927_2	COG4748	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0083927_2	PF13588,TIGR04256,COG4748	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0083927_3	748727.CLJU_c16790	118.0	5.41e-29	N/A	N/A
eggNOG-mapper	UHGV-0083927_4	1507.HMPREF0262_01709	58.5	0.0000000387	Peptidoglycan-binding domain 1 protein	N/A
Pfam	UHGV-0083927_4	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
COG	UHGV-0083927_4	COG2333	N/A	N/A	DNA uptake channel protein ComEC C-terminal domain, metallo-beta-lactamase superfamily	N/A
structural_annotation	UHGV-0083927_4	PF13058,COG2856	N/A	N/A	N/A	N/A
PHROG	UHGV-0083927_5	phrog_8	49.4	0.000000000000099	transcriptional regulator	transcription regulation
UniRef90	UHGV-0083927_5	UniRef90_A0A1V0QCA1	92.4	5.87e-22	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0083927_5	97138.C820_00784	78.6	2.43e-17	sequence-specific DNA binding	N/A
Pfam	UHGV-0083927_5	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
COG	UHGV-0083927_5	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
eggNOG-mapper	UHGV-0083927_9	768710.DesyoDRAFT_5248	87.0	7.96e-18	Pentapeptide repeats (8 copies)	N/A
COG	UHGV-0083927_9	COG1357	N/A	N/A	N/A	N/A
PHROG	UHGV-0083927_13	phrog_434	336.2	0	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0083927_13	UniRef90_UPI001E2B2E8B	263.0	0	YqaJ viral recombinase family protein	N/A
eggNOG-mapper	UHGV-0083927_13	458233.MCCL_0946	263.0	0	YqaJ-like viral recombinase domain	N/A
Pfam	UHGV-0083927_13	PF09588	N/A	N/A	YqaJ-like viral recombinase domain	YqaJ
NCBIFam	UHGV-0083927_13	TIGR03033.1	N/A	N/A	putative phage-type endonuclease	N/A
COG	UHGV-0083927_13	COG5377	N/A	N/A	Phage-related protein, predicted endonuclease	N/A
structural_annotation	UHGV-0083927_13	PF09588,MF_03030,TIGR03033,COG5377	N/A	N/A	N/A	N/A
KOfam	UHGV-0083927_14	K07455	292.5	0	recT; recombination protein RecT	N/A
PHROG	UHGV-0083927_14	phrog_148	271.8	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0083927_14	UniRef90_UPI0014317E61	301.0	0	recombinase RecT	N/A
eggNOG-mapper	UHGV-0083927_14	1226322.HMPREF1545_00015	286.0	0	RecT family	N/A
Pfam	UHGV-0083927_14	PF03837	N/A	N/A	RecT family	RecT
NCBIFam	UHGV-0083927_14	TIGR00616.1	N/A	N/A	recombinase, phage RecT family	N/A
COG	UHGV-0083927_14	COG3723	N/A	N/A	Recombinational DNA repair protein RecT	N/A
structural_annotation	UHGV-0083927_14	PF03837,NF007351,COG3723	N/A	N/A	N/A	N/A
KOfam	UHGV-0083927_15	K03111	147.9	9.94922e-44	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0083927_15	phrog_44	155.2	0	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0083927_15	UniRef90_UPI001CF8FEA9	181.0	0	single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0083927_15	398512.JQKC01000002_gene1869	149.0	1.26117e-44	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-0083927_15	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0083927_15	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0083927_15	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0083927_15	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0083927_15	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0083927_16	phrog_2562	183.6	0	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0083927_16	UniRef90_A0A7Y9A651	194.0	0	DnaD/phage-associated family protein	N/A
eggNOG-mapper	UHGV-0083927_16	290402.Cbei_1623	194.0	0	N/A	N/A
Pfam	UHGV-0083927_16	PF14297	N/A	N/A	Lin1244/Lin1753-like, N-terminal	Lin1244_N
Pfam	UHGV-0083927_16	PF07261	N/A	N/A	Replication initiation and membrane attachment	DnaB_2
NCBIFam	UHGV-0083927_16	TIGR01446.1	N/A	N/A	DnaD domain protein	N/A
COG	UHGV-0083927_16	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0083927_16	PF14297,TIGR01714	N/A	N/A	N/A	N/A
KOfam	UHGV-0083927_17	K03497	126.4	3.9e-37	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	N/A
PHROG	UHGV-0083927_17	phrog_6218	215.7	0	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0083927_17	UniRef90_A0A2V2FQV6	281.0	0	ParB domain-containing protein	N/A
eggNOG-mapper	UHGV-0083927_17	445972.ANACOL_00162	275.0	0	ParB-like nuclease domain	N/A
Pfam	UHGV-0083927_17	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
NCBIFam	UHGV-0083927_17	TIGR00180.1	N/A	N/A	ParB/RepB/Spo0J family partition protein	N/A
COG	UHGV-0083927_17	COG0710	N/A	N/A	3-dehydroquinate dehydratase	N/A
structural_annotation	UHGV-0083927_17	PF02195,PF18579,MF_02015,TIGR00180,COG1475	N/A	N/A	N/A	N/A
PHROG	UHGV-0083927_18	phrog_24518	98.6	6.3e-29	N/A	unknown function
eggNOG-mapper	UHGV-0083927_18	1519439.JPJG01000077_gene922	113.0	1.01e-28	N/A	N/A
Pfam	UHGV-0083927_19	PF12760	N/A	N/A	Transposase zinc-ribbon domain	Zn_Tnp_IS1595
structural_annotation	UHGV-0083927_21	PF18300,MF_01549,NF007981	N/A	N/A	N/A	N/A
PHROG	UHGV-0083927_23	phrog_8684	79.8	4.5e-24	N/A	unknown function
UniRef90	UHGV-0083927_23	UniRef90_A0A8I0HKU3	95.5	1.36e-22	YopX domain-containing protein	N/A
eggNOG-mapper	UHGV-0083927_23	1122605.KB893643_gene656	66.2	0.0000000000121	YopX protein	N/A
Pfam	UHGV-0083927_23	PF09643	N/A	N/A	YopX protein	YopX
NCBIFam	UHGV-0083927_23	TIGR01671.1	N/A	N/A	phage conserved hypothetical protein TIGR01671	N/A
structural_annotation	UHGV-0083927_23	PF09643,TIGR01671	N/A	N/A	N/A	N/A
PHROG	UHGV-0083927_24	phrog_17260	200.4	0	N/A	unknown function
eggNOG-mapper	UHGV-0083927_24	1265505.ATUG01000002_gene2539	175.0	0	N/A	N/A
AcrCatalog	UHGV-0083927_24	cluster_11231	176.0	0	NA	N/A
PHROG	UHGV-0083927_25	phrog_10714	44.1	0.0000000000033	N/A	unknown function
eggNOG-mapper	UHGV-0083927_27	469596.HMPREF9488_03215	67.8	0.00000000000121	N/A	N/A
structural_annotation	UHGV-0083927_27	PF16475	N/A	N/A	N/A	N/A
PHROG	UHGV-0083927_29	phrog_11371	43.2	0.0000000000044	N/A	unknown function
UniRef90	UHGV-0083927_29	UniRef90_A0A1C6BWK1	173.0	0	Modification methylase VspI	N/A
eggNOG-mapper	UHGV-0083927_29	582744.Msip34_2031	77.4	2.99e-16	site-specific DNA-methyltransferase (adenine-specific) activity	N/A
COG	UHGV-0083927_29	COG0286	N/A	N/A	Type I restriction-modification system, DNA methylase subunit	N/A
PHROG	UHGV-0083927_30	phrog_599	45.6	0.0000000000015	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
Pfam	UHGV-0083927_30	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
NCBIFam	UHGV-0083927_30	TIGR03655.1	N/A	N/A	Lar family restriction alleviation protein	N/A
structural_annotation	UHGV-0083927_30	NF007260	N/A	N/A	N/A	N/A
PHROG	UHGV-0083927_32	phrog_36	61.5	1.5e-17	transcriptional regulator	transcription regulation
UniRef90	UHGV-0083927_32	UniRef90_A0A7X6CWS4	65.9	0.00000000005	N/A	N/A
eggNOG-mapper	UHGV-0083927_32	742741.HMPREF9475_02386	71.6	0.0000000000000566	sigma factor activity	N/A
Pfam	UHGV-0083927_32	PF07374	N/A	N/A	N/A	DUF1492
COG	UHGV-0083927_32	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
structural_annotation	UHGV-0083927_32	PF07374,MF_00674,TIGR01636,COG2739	N/A	N/A	N/A	N/A
PHROG	UHGV-0083927_33	phrog_2412	71.4	1.3e-20	N/A	unknown function
eggNOG-mapper	UHGV-0083927_33	563192.HMPREF0179_00168	69.7	0.000000000000119	N/A	N/A
KOfam	UHGV-0083927_34	K06909	154.4	1.4013e-45	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0083927_34	phrog_10250	164.0	0	N/A	unknown function
UniRef90	UHGV-0083927_34	UniRef90_A0A8J6PA00	551.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0083927_34	1329516.JPST01000014_gene657	342.0	0	Phage terminase, large subunit	N/A
Pfam	UHGV-0083927_34	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
Pfam	UHGV-0083927_34	PF17289	N/A	N/A	Terminase RNaseH-like domain	Terminase_6C
NCBIFam	UHGV-0083927_34	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0083927_34	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0083927_34	PF04466,PF20441,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0083927_35	phrog_533	342.0	0	portal protein	head and packaging
UniRef90	UHGV-0083927_35	UniRef90_A0A3A4W1Z3	444.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0083927_35	642492.Clole_0815	392.0	0	N/A	N/A
structural_annotation	UHGV-0083927_35	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0083927_36	phrog_581	255.0	0	minor head protein	head and packaging
UniRef90	UHGV-0083927_36	UniRef90_UPI000C06AD72	363.0	0	polymorphic toxin type 50 domain-containing protein	N/A
eggNOG-mapper	UHGV-0083927_36	641112.ACOK01000073_gene2890	291.0	0	N/A	N/A
Pfam	UHGV-0083927_36	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
Pfam	UHGV-0083927_36	PF15542	N/A	N/A	Bacterial toxin 50	Ntox50
COG	UHGV-0083927_36	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0083927_36	PF06152,PF12636	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0083927_37	PF07073,MF_00436,NF008636,COG4568	N/A	N/A	N/A	N/A
UniRef90	UHGV-0083927_38	UniRef90_R6AQU3	72.4	0.00000000000000309	Conserved protein	N/A
eggNOG-mapper	UHGV-0083927_38	1123302.KB904182_gene73	62.4	0.0000000000053	N/A	N/A
structural_annotation	UHGV-0083927_38	PF20111	N/A	N/A	N/A	N/A