UHGV-0084613 (vOTU-151507)

Viral Genome: UHGV-0084613

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0084613
vOTU ID	vOTU-151507
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_164663
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	60.39 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	8
CheckV host markers	2
Recoded stop codon	No

Viral Content
geNomad score	0.9724
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	8.81
Jumbo phage	No

Genome content
Genome length (bp)	25,960
GC content	51.30%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	39
CDS density	92%
Average CDS length (bps)	613.39
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 60.39)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
UniRef90	UHGV-0084613_1	UniRef90_UPI0004E17FCC	573.0	0	peptidoglycan DD-metalloendopeptidase family protein	N/A
eggNOG-mapper	UHGV-0084613_1	1408437.JNJN01000039_gene389	573.0	0	heme binding	N/A
Pfam	UHGV-0084613_1	PF18819	N/A	N/A	Phage MuF-C-terminal domain	MuF_C
COG	UHGV-0084613_1	COG0739	N/A	N/A	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	N/A
PHROG	UHGV-0084613_3	phrog_36	44.2	0.0000000000039	transcriptional regulator	transcription regulation
Pfam	UHGV-0084613_3	PF04545	N/A	N/A	Sigma-70, region 4	Sigma70_r4
COG	UHGV-0084613_3	COG1595	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	N/A
structural_annotation	UHGV-0084613_3	PF04545,MF_00674,NF008895,COG2739	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0084613_4	445972.ANACOL_01878	89.0	2.84e-20	N/A	N/A
PHROG	UHGV-0084613_6	phrog_16490	254.9	0	N/A	unknown function
eggNOG-mapper	UHGV-0084613_6	1408437.JNJN01000043_gene803	264.0	0	N/A	N/A
eggNOG-mapper	UHGV-0084613_7	1408437.JNJN01000043_gene802	179.0	0	N/A	N/A
UniRef90	UHGV-0084613_9	UniRef90_A0A8F0WD75	77.0	0.0000000000000136	RNA polymerase sigma factor/Ubiquitin-like protein	N/A
eggNOG-mapper	UHGV-0084613_9	1378168.N510_03079	137.0	4.83e-38	N/A	N/A
KOfam	UHGV-0084613_10	K14059	129.2	5.4e-38	int; integrase	N/A
PHROG	UHGV-0084613_10	phrog_1	130.1	2.3e-38	integrase	integration and excision
UniRef90	UHGV-0084613_10	UniRef90_A0A2Z4QB94	381.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-0084613_10	1514668.JOOA01000001_gene242	134.0	8.55e-34	Phage integrase family	N/A
Pfam	UHGV-0084613_10	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0084613_10	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0084613_10	PF00589,PF12167,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A
UniRef90	UHGV-0084613_11	UniRef90_UPI001D0EDE7D	177.0	0	nucleotidyltransferase substrate binding protein	N/A
eggNOG-mapper	UHGV-0084613_11	1378168.N510_00089	114.0	6.86e-30	TIGRFAM nucleotidyltransferase substrate binding protein, HI0074 family	N/A
Pfam	UHGV-0084613_11	PF08780	N/A	N/A	Nucleotidyltransferase substrate binding protein like	NTase_sub_bind
NCBIFam	UHGV-0084613_11	TIGR01987.1	N/A	N/A	HI0074 family nucleotidyltransferase substrate-binding subunit	N/A
COG	UHGV-0084613_11	COG1669	N/A	N/A	Predicted nucleotidyltransferase MJ0435	N/A
structural_annotation	UHGV-0084613_11	PF08780,TIGR01987,COG2445	N/A	N/A	N/A	N/A
KOfam	UHGV-0084613_12	K07075	62.1	1.4e-17	N/A	N/A
UniRef90	UHGV-0084613_12	UniRef90_UPI001D0E1B6C	146.0	5.04467e-44	nucleotidyltransferase domain-containing protein	N/A
eggNOG-mapper	UHGV-0084613_12	411483.FAEPRAA2165_00449	137.0	1.53e-39	Nucleotidyltransferase substrate binding protein like	N/A
Pfam	UHGV-0084613_12	PF18765	N/A	N/A	Polymerase beta, Nucleotidyltransferase	Polbeta
COG	UHGV-0084613_12	COG1669	N/A	N/A	Predicted nucleotidyltransferase MJ0435	N/A
structural_annotation	UHGV-0084613_12	PF18765,NF010309,COG1669	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0084613_13	1131462.DCF50_p2449	72.8	0.00000000000314	Bacterial Ig-like domain 2	N/A
NCBIFam	UHGV-0084613_13	NF033223.2	N/A	N/A	YHYH domain-containing protein	N/A
COG	UHGV-0084613_13	COG5492	N/A	N/A	N/A	N/A
PHROG	UHGV-0084613_15	phrog_8	53.5	0.0000000000000063	transcriptional regulator	transcription regulation
UniRef90	UHGV-0084613_15	UniRef90_UPI001C020D87	84.0	1.26e-18	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0084613_15	198094.BA_3829	59.7	0.000000000855	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0084613_15	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0084613_15	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0084613_15	PF12844,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-0084613_16	phrog_18248	59.1	6.9e-17	transcriptional regulator	transcription regulation
UniRef90	UHGV-0084613_16	UniRef90_A0A847W1V2	87.8	1.82e-21	Helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-0084613_16	394503.Ccel_3076	77.0	1.94e-17	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-0084613_16	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
COG	UHGV-0084613_16	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0084613_16	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0084613_21	phrog_155	107.4	1.6e-31	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0084613_21	UniRef90_UPI000834FCC7	187.0	0	ERF family protein	N/A
eggNOG-mapper	UHGV-0084613_21	158189.SpiBuddy_1836	173.0	0	single-stranded DNA binding	N/A
Pfam	UHGV-0084613_21	PF04404	N/A	N/A	ERF superfamily	ERF
COG	UHGV-0084613_21	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0084613_21	PF04404,COG4712	N/A	N/A	N/A	N/A
PHROG	UHGV-0084613_22	phrog_398	169.3	0	N/A	unknown function
UniRef90	UHGV-0084613_22	UniRef90_UPI00137B6F1E	333.0	0	putative HNHc nuclease	N/A
eggNOG-mapper	UHGV-0084613_22	1485543.JMME01000021_gene802	188.0	0	Putative HNHc nuclease	N/A
Pfam	UHGV-0084613_22	PF16784	N/A	N/A	Putative HNHc nuclease	HNHc_6
structural_annotation	UHGV-0084613_22	PF16784	N/A	N/A	N/A	N/A
PHROG	UHGV-0084613_23	phrog_997	114.0	1.1e-33	replication terminator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0084613_23	UniRef90_R6MCS9	106.0	2.58e-27	N/A	N/A
eggNOG-mapper	UHGV-0084613_23	1519439.JPJG01000059_gene1910	136.0	5.01001e-40	N/A	N/A
PHROG	UHGV-0084613_24	phrog_1029	153.3	1.4013e-45	N/A	unknown function
eggNOG-mapper	UHGV-0084613_24	1203606.HMPREF1526_01890	129.0	1.02e-33	N/A	N/A
structural_annotation	UHGV-0084613_24	PF10065,COG5532	N/A	N/A	N/A	N/A
KOfam	UHGV-0084613_25	K03111	131.2	1.3e-38	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0084613_25	phrog_44	134.9	5.8e-40	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0084613_25	UniRef90_R6LVK0	196.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0084613_25	693746.OBV_12860	187.0	0	Single-strand binding protein family	N/A
Pfam	UHGV-0084613_25	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0084613_25	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0084613_25	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0084613_25	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0084613_25	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0084613_26	phrog_15768	60.6	3.3e-17	N/A	unknown function
UniRef90	UHGV-0084613_26	UniRef90_A0A1C6J8D5	196.0	0	N/A	N/A
eggNOG-mapper	UHGV-0084613_26	1123058.KB894219_gene165	55.8	0.00000141	COG NOG19076 non supervised orthologous group	N/A
Pfam	UHGV-0084613_26	PF19808	N/A	N/A	N/A	DUF6291
COG	UHGV-0084613_26	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0084613_26	PF19808,PF07261,TIGR01446,COG3935	N/A	N/A	N/A	N/A
KOfam	UHGV-0084613_27	K01160	62.5	1.2e-17	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0084613_27	phrog_34	54.7	0.0000000000000021	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0084613_27	UniRef90_UPI0018ABA1B6	150.0	2.38221e-44	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0084613_27	561177.ANHYDRO_01396	109.0	5.48e-29	Endodeoxyribonuclease RusA	N/A
COG	UHGV-0084613_27	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0084613_27	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-0084613_28	phrog_10714	45.3	0.0000000000012	N/A	unknown function
UniRef90	UHGV-0084613_28	UniRef90_UPI001C3A10B1	78.6	1.36e-16	Zinc ribbon domain-containing protein	N/A
eggNOG-mapper	UHGV-0084613_28	1226322.HMPREF1545_00023	55.1	0.0000000405	N/A	N/A
PHROG	UHGV-0084613_31	phrog_3154	52.8	0.0000000000000086	N/A	unknown function
eggNOG-mapper	UHGV-0084613_36	1226322.HMPREF1545_00288	69.7	0.0000000000000405	N/A	N/A
PHROG	UHGV-0084613_37	phrog_606	46.2	0.00000000000048	terminase small subunit	head and packaging
Pfam	UHGV-0084613_37	PF16677	N/A	N/A	DNA-packaging protein gp3	GP3_package
structural_annotation	UHGV-0084613_37	PF16677	N/A	N/A	N/A	N/A
KOfam	UHGV-0084613_38	K06909	230.5	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0084613_38	phrog_3717	214.1	0	terminase large subunit	head and packaging
UniRef90	UHGV-0084613_38	UniRef90_UPI001105ADB4	629.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0084613_38	1226322.HMPREF1545_03843	605.0	0	phage Terminase large subunit	N/A
Pfam	UHGV-0084613_38	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
NCBIFam	UHGV-0084613_38	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0084613_38	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0084613_38	PF04466,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0084613_39	phrog_156	129.6	2.1e-38	portal protein	head and packaging
eggNOG-mapper	UHGV-0084613_39	1519439.JPJG01000060_gene1886	348.0	0	N/A	N/A