UHGV-0084655 (vOTU-062625)

Viral Genome: UHGV-0084655

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0084655
vOTU ID	vOTU-062625
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_149514
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.9 (High-quality)
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	2
Recoded stop codon	No

Viral Content
geNomad score	0.9692
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	39.75
Jumbo phage	No

Genome content
Genome length (bp)	39,628
GC content	37.18%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	51
CDS density	89%
Average CDS length (bps)	690.24
Total tRNA genes	1
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0084655_1	K07273	140.9	1.10002e-41	acm; lysozyme	N/A
PHROG	UHGV-0084655_1	phrog_291	123.1	3e-36	endolysin	lysis
UniRef90	UHGV-0084655_1	UniRef90_A0A356C4H3	556.0	0	LysM domain-containing protein	N/A
eggNOG-mapper	UHGV-0084655_1	411470.RUMGNA_00451	148.0	3.13e-39	COG COG3757 Lyzozyme M1 (1,4-beta-N-acetylmuramidase)	N/A
Pfam	UHGV-0084655_1	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
Pfam	UHGV-0084655_1	PF01476	N/A	N/A	LysM domain	LysM
COG	UHGV-0084655_1	COG3023	N/A	N/A	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	N/A
structural_annotation	UHGV-0084655_1	PF01183,NF007404,COG3757	N/A	N/A	N/A	N/A
PHROG	UHGV-0084655_2	phrog_199	73.8	2e-21	holin	lysis
UniRef90	UHGV-0084655_2	UniRef90_A0A356C4Q2	266.0	0	Holin	N/A
eggNOG-mapper	UHGV-0084655_2	483218.BACPEC_01140	213.0	0	Bacteriophage holin family	N/A
Pfam	UHGV-0084655_2	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-0084655_2	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-0084655_2	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-0084655_2	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0084655_3	1235793.C809_03302	63.9	0.0000000169	N/A	N/A
PHROG	UHGV-0084655_4	phrog_38707	204.8	0	N/A	unknown function
eggNOG-mapper	UHGV-0084655_4	33035.JPJF01000033_gene2261	228.0	0	tail collar domain protein	N/A
COG	UHGV-0084655_4	COG4675	N/A	N/A	Phage tail collar domain	N/A
PHROG	UHGV-0084655_5	phrog_6616	360.7	0	tail protein	tail
UniRef90	UHGV-0084655_5	UniRef90_A0A2Y9BMC1	180.0	1.96182e-44	Peptidase S74 domain-containing protein	N/A
eggNOG-mapper	UHGV-0084655_5	1121866.AUGK01000003_gene1439	197.0	0	Phage minor structural protein	N/A
COG	UHGV-0084655_5	COG4926	N/A	N/A	Phage-related protein	N/A
PHROG	UHGV-0084655_6	phrog_1194	68.6	8.4e-20	N/A	unknown function
structural_annotation	UHGV-0084655_6	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0084655_7	phrog_1535	139.0	0	tail length tape measure protein	tail
eggNOG-mapper	UHGV-0084655_7	1449050.JNLE01000003_gene3881	155.0	6.42e-36	domain protein	N/A
COG	UHGV-0084655_7	COG1511	N/A	N/A	N/A	N/A
PHROG	UHGV-0084655_8	phrog_706	131.9	4.1e-39	N/A	unknown function
UniRef90	UHGV-0084655_8	UniRef90_UPI0011DC8B0C	181.0	0	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-0084655_8	411459.RUMOBE_01383	176.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0084655_8	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0084655_8	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0084655_9	phrog_11299	109.5	2.6e-32	N/A	unknown function
eggNOG-mapper	UHGV-0084655_9	1298920.KI911353_gene2067	116.0	9.71e-31	N/A	N/A
structural_annotation	UHGV-0084655_9	PF20378	N/A	N/A	N/A	N/A
PHROG	UHGV-0084655_10	phrog_3099	157.7	0	N/A	unknown function
eggNOG-mapper	UHGV-0084655_10	1160721.RBI_II00532	225.0	0	N/A	N/A
structural_annotation	UHGV-0084655_10	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0084655_11	phrog_3266	95.2	5.3e-28	tail completion	connector
eggNOG-mapper	UHGV-0084655_11	1449050.JNLE01000003_gene3885	114.0	2.21e-30	N/A	N/A
structural_annotation	UHGV-0084655_11	PF20765	N/A	N/A	N/A	N/A
PHROG	UHGV-0084655_12	phrog_556	88.9	4.5e-26	minor head protein	head and packaging
UniRef90	UHGV-0084655_12	UniRef90_A0A1M7NJ72	124.0	1.2e-33	Minor capsid protein	N/A
eggNOG-mapper	UHGV-0084655_12	1304866.K413DRAFT_3041	124.0	1.89e-34	N/A	N/A
Pfam	UHGV-0084655_12	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-0084655_12	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-0084655_13	phrog_3366	56.6	3.3e-16	N/A	unknown function
eggNOG-mapper	UHGV-0084655_13	1449050.JNLE01000003_gene3887	80.5	6.89e-18	N/A	N/A
Pfam	UHGV-0084655_13	PF20536	N/A	N/A	N/A	DUF6751
structural_annotation	UHGV-0084655_13	PF20536,TIGR01563	N/A	N/A	N/A	N/A
PHROG	UHGV-0084655_14	phrog_541	84.1	1.5e-24	head-tail adaptor	connector
UniRef90	UHGV-0084655_14	UniRef90_A0A371AQT0	87.0	1.43e-19	N/A	N/A
eggNOG-mapper	UHGV-0084655_14	903814.ELI_3207	55.1	0.0000000662	N/A	N/A
PHROG	UHGV-0084655_15	phrog_10	184.1	0	major head protein	head and packaging
UniRef90	UHGV-0084655_15	UniRef90_UPI001D090FF5	447.0	0	phage major capsid protein	N/A
eggNOG-mapper	UHGV-0084655_15	411461.DORFOR_00744	440.0	0	COG NOG20168 non supervised orthologous group	N/A
Pfam	UHGV-0084655_15	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0084655_15	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0084655_15	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0084655_15	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0084655_16	phrog_2303	94.7	1.2e-27	head scaffolding protein	head and packaging
eggNOG-mapper	UHGV-0084655_16	1321782.HMPREF1986_02267	148.0	1.74041e-42	N/A	N/A
structural_annotation	UHGV-0084655_16	PF10788,MF_02110	N/A	N/A	N/A	N/A
KOfam	UHGV-0084655_17	K07584	78.9	7.8e-23	N/A	N/A
PHROG	UHGV-0084655_17	phrog_4478	72.5	4.5e-21	peptidase	other
UniRef90	UHGV-0084655_17	UniRef90_UPI000830E3BF	82.0	2.62e-18	ribosomal-processing cysteine protease Prp	N/A
eggNOG-mapper	UHGV-0084655_17	1232453.BAIF02000011_gene3357	79.3	5.06e-18	Cysteine protease Prp	N/A
Pfam	UHGV-0084655_17	PF04327	N/A	N/A	Cysteine protease Prp	Peptidase_Prp
COG	UHGV-0084655_17	COG2868	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0084655_17	PF04327,NF011124,COG2868	N/A	N/A	N/A	N/A
PHROG	UHGV-0084655_18	phrog_581	103.3	2.9e-30	minor head protein	head and packaging
eggNOG-mapper	UHGV-0084655_18	1449050.JNLE01000003_gene3892	152.0	1.12945e-42	Phage minor capsid protein 2	N/A
Pfam	UHGV-0084655_18	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0084655_18	COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-0084655_20	phrog_581	210.2	0	minor head protein	head and packaging
UniRef90	UHGV-0084655_20	UniRef90_UPI001570CBC5	340.0	0	phage minor capsid protein	N/A
eggNOG-mapper	UHGV-0084655_20	1449050.JNLE01000003_gene3892	207.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-0084655_20	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0084655_20	COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-0084655_21	phrog_533	355.0	0	portal protein	head and packaging
UniRef90	UHGV-0084655_21	UniRef90_UPI00195CDA13	507.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0084655_21	411461.DORFOR_00749	439.0	0	COG NOG25118 non supervised orthologous group	N/A
Pfam	UHGV-0084655_21	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0084655_21	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-0084655_22	K06909	227.9	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0084655_22	phrog_2	124.3	1.6e-36	terminase large subunit	head and packaging
UniRef90	UHGV-0084655_22	UniRef90_UPI0015714730	631.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0084655_22	1235799.C818_04217	611.0	0	Phage terminase large subunit	N/A
Pfam	UHGV-0084655_22	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
NCBIFam	UHGV-0084655_22	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0084655_22	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0084655_22	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
KOfam	UHGV-0084655_23	K07474	91.4	2.1e-26	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-0084655_23	phrog_2606	168.0	0	terminase small subunit	head and packaging
UniRef90	UHGV-0084655_23	UniRef90_UPI001F3465DA	169.0	0	terminase small subunit	N/A
eggNOG-mapper	UHGV-0084655_23	411461.DORFOR_01162	165.0	1.54143e-44	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-0084655_23	PF06056	N/A	N/A	Putative ATPase subunit of terminase (gpP-like)	Terminase_5
Pfam	UHGV-0084655_23	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-0084655_23	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0084655_23	PF02796,NF040601,COG5484	N/A	N/A	N/A	N/A
AcrCatalog	UHGV-0084655_24	cluster_138565	114.0	6.92e-34	NA	N/A
structural_annotation	UHGV-0084655_24	PF15968	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0084655_25	315730.BcerKBAB4_3619	59.7	0.000000332	N/A	N/A
AcrCatalog	UHGV-0084655_25	cluster_211731	162.0	0	NA	N/A
Pfam	UHGV-0084655_25	PF20505	N/A	N/A	N/A	DUF6731
structural_annotation	UHGV-0084655_25	PF20505	N/A	N/A	N/A	N/A
PHROG	UHGV-0084655_26	phrog_36	54.0	0.0000000000000034	transcriptional regulator	transcription regulation
UniRef90	UHGV-0084655_26	UniRef90_A0A3B8SPQ2	63.5	0.000000000616	RNA polymerase subunit sigma-70	N/A
eggNOG-mapper	UHGV-0084655_26	397290.C810_01391	122.0	1.41e-33	N/A	N/A
structural_annotation	UHGV-0084655_26	PF02996	N/A	N/A	N/A	N/A
PHROG	UHGV-0084655_27	phrog_2245	77.9	1.5e-22	nucleoside triphosphate pyrophosphohydrolase	other
UniRef90	UHGV-0084655_27	UniRef90_A0A373NRP8	90.9	3.48e-21	MazG domain-containing protein	N/A
eggNOG-mapper	UHGV-0084655_27	326426.Bbr_0313	80.9	7.75e-17	N/A	N/A
PHROG	UHGV-0084655_29	phrog_15077	110.3	9.2e-33	N/A	unknown function
UniRef90	UHGV-0084655_29	UniRef90_A0A3A6HZA9	211.0	0	N/A	N/A
eggNOG-mapper	UHGV-0084655_29	1280698.AUJS01000007_gene1019	211.0	0	N/A	N/A
structural_annotation	UHGV-0084655_29	PF11300,NF038070	N/A	N/A	N/A	N/A
PHROG	UHGV-0084655_30	phrog_8470	279.4	0	N/A	unknown function
UniRef90	UHGV-0084655_30	UniRef90_UPI00164C094F	222.0	0	PcfJ domain-containing protein	N/A
eggNOG-mapper	UHGV-0084655_30	483218.BACPEC_01166	415.0	0	PcfJ-like protein	N/A
Pfam	UHGV-0084655_30	PF14284	N/A	N/A	PcfJ-like protein	PcfJ
structural_annotation	UHGV-0084655_30	PF14284	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0084655_31	483218.BACPEC_01167	210.0	0	N/A	N/A
PHROG	UHGV-0084655_33	phrog_7566	100.7	7.2e-30	N/A	unknown function
eggNOG-mapper	UHGV-0084655_33	483218.BACPEC_01171	85.5	4.62e-20	N/A	N/A
KOfam	UHGV-0084655_34	K03469	51.1	0.000000000000027	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	N/A
PHROG	UHGV-0084655_34	phrog_531	58.4	1.4e-16	Rnase H	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0084655_34	UniRef90_A0A3B8UHR5	159.0	0	RNase H type-1 domain-containing protein	N/A
eggNOG-mapper	UHGV-0084655_34	1235800.C819_00514	101.0	2.63e-25	RNase H	N/A
Pfam	UHGV-0084655_34	PF00075	N/A	N/A	RNase H	RNase_H
COG	UHGV-0084655_34	COG0328	N/A	N/A	Ribonuclease HI	N/A
structural_annotation	UHGV-0084655_34	PF00075,MF_00042,NF001236,COG0328	N/A	N/A	N/A	N/A
PHROG	UHGV-0084655_35	phrog_3584	182.4	0	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0084655_35	641107.CDLVIII_1314	151.0	2.44947e-42	N/A	N/A
structural_annotation	UHGV-0084655_35	PF21578	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0084655_38	PF09035	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0084655_41	PF07378,MF_00783,COG5443	N/A	N/A	N/A	N/A
UniRef90	UHGV-0084655_42	UniRef90_UPI00128BC177	75.1	2.51e-16	N/A	N/A
eggNOG-mapper	UHGV-0084655_42	171693.BN988_01635	73.2	2.43e-16	N/A	N/A
Pfam	UHGV-0084655_42	PF05339	N/A	N/A	N/A	DUF739
COG	UHGV-0084655_42	COG3655	N/A	N/A	DNA-binding transcriptional regulator, XRE family	N/A
structural_annotation	UHGV-0084655_42	PF05339,NF002773,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0084655_43	K22300	45.6	0.0000000000017	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0084655_43	phrog_3	45.3	0.0000000000036	transcriptional repressor	transcription regulation
UniRef90	UHGV-0084655_43	UniRef90_A0A3D5WRG0	103.0	7.45e-28	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0084655_43	1256908.HMPREF0373_00646	68.6	0.0000000000000151	Helix-turn-helix XRE-family like proteins	N/A
PADLOC	UHGV-0084655_43	retron_type_VI_hth_cluster2_1	44.4	0.0000000000053	N/A	Retron
Pfam	UHGV-0084655_43	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0084655_43	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0084655_43	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0084655_45	K22300	41.7	0.000000000023	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0084655_45	phrog_2967	82.6	5.4e-24	transcriptional regulator	transcription regulation
UniRef90	UHGV-0084655_45	UniRef90_U2RAG2	129.0	1.01e-35	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0084655_45	1256908.HMPREF0373_00643	129.0	1.69e-36	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	N/A
Pfam	UHGV-0084655_45	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
COG	UHGV-0084655_45	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-0084655_45	PF01381,PF00717,MF_00015,NF041951,COG3655	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0084655_46	PF18768,MF_02066,NF011886,COG5010	N/A	N/A	N/A	N/A
PHROG	UHGV-0084655_47	phrog_87	88.0	8.7e-26	metallo-protease	other
UniRef90	UHGV-0084655_47	UniRef90_A0A373INP4	184.0	0	ImmA/IrrE family metallo-endopeptidase	N/A
eggNOG-mapper	UHGV-0084655_47	1235790.C805_00591	182.0	0	Zn peptidase	N/A
Pfam	UHGV-0084655_47	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
COG	UHGV-0084655_47	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-0084655_47	PF06114,COG2856	N/A	N/A	N/A	N/A
PHROG	UHGV-0084655_48	phrog_27728	52.8	0.0000000000000074	N/A	unknown function
UniRef90	UHGV-0084655_48	UniRef90_A0A0N9YRJ3	70.9	0.000000000000358	FlgT_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0084655_48	1121947.AUHK01000002_gene901	62.8	0.0000000000941	N/A	N/A
AcrCatalog	UHGV-0084655_48	cluster_25916	63.5	0.00000000000000113	NA	N/A
structural_annotation	UHGV-0084655_48	PF16538	N/A	N/A	N/A	N/A
PHROG	UHGV-0084655_49	phrog_2158	187.9	0	abortive infection resistance protein	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0084655_49	UniRef90_A0A1M4WG46	333.0	0	Abortive infection bacteriophage resistance protein	N/A
eggNOG-mapper	UHGV-0084655_49	875454.BAEW01000002_gene514	213.0	0	Abi-like protein	N/A
PADLOC	UHGV-0084655_49	AbiD	121.8	1.2e-35	AbiD	Abi
Pfam	UHGV-0084655_49	PF07751	N/A	N/A	Abi-like protein	Abi_2
COG	UHGV-0084655_49	COG4823	N/A	N/A	Abortive infection bacteriophage resistance protein	N/A
KOfam	UHGV-0084655_50	K14059	221.5	0	int; integrase	N/A
PHROG	UHGV-0084655_50	phrog_1	191.1	0	integrase	integration and excision
UniRef90	UHGV-0084655_50	UniRef90_A0A3A9B3K9	288.0	0	Site-specific integrase	N/A
eggNOG-mapper	UHGV-0084655_50	1235799.C818_03513	258.0	0	Phage integrase, N-terminal SAM-like domain	N/A
Pfam	UHGV-0084655_50	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-0084655_50	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0084655_50	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0084655_50	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
KOfam	UHGV-0084655_51	K02049	324.2	0	ABC.SN.A; NitT/TauT family transport system ATP-binding protein	N/A
PHROG	UHGV-0084655_51	phrog_293	200.5	0	ABC transporter	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0084655_51	UniRef90_A0A1Q6MMU0	500.0	0	Spermidine/putrescine ABC transporter ATP-binding protein	N/A
eggNOG-mapper	UHGV-0084655_51	1123075.AUDP01000036_gene1261	318.0	0	ABC-type nitrate sulfonate bicarbonate transport system ATPase component	N/A
Pfam	UHGV-0084655_51	PF00005	N/A	N/A	ABC transporter	ABC_tran
COG	UHGV-0084655_51	COG1116	N/A	N/A	ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component	N/A