UHGV-0084708 (vOTU-088717)

Viral Genome: UHGV-0084708

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0084708
vOTU ID	vOTU-088717
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_144093
Associated BioSample	SAMEA2737739
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	52.31 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9798
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	35.05
Jumbo phage	No

Genome content
Genome length (bp)	42,044
GC content	38.22%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	52
CDS density	85%
Average CDS length (bps)	689.77
Total tRNA genes	4
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 52.31)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
eggNOG-mapper	UHGV-0084708_1	1232453.BAIF02000058_gene1620	85.5	4.47e-18	N/A	N/A
KOfam	UHGV-0084708_2	K07741	79.0	1.5e-22	antB; anti-repressor protein	N/A
PHROG	UHGV-0084708_2	phrog_130	218.7	0	anti-repressor Ant	transcription regulation
UniRef90	UHGV-0084708_2	UniRef90_A0A317UCB5	458.0	0	Phage antirepressor Ant	N/A
eggNOG-mapper	UHGV-0084708_2	632518.Calow_0811	213.0	0	BRO family, N-terminal domain	N/A
Pfam	UHGV-0084708_2	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
Pfam	UHGV-0084708_2	PF03374	N/A	N/A	Phage antirepressor protein KilAC domain	ANT
COG	UHGV-0084708_2	COG3617	N/A	N/A	Prophage antirepressor	N/A
structural_annotation	UHGV-0084708_2	PF02498,PF03374,TIGR02681,COG3617	N/A	N/A	N/A	N/A
UniRef90	UHGV-0084708_3	UniRef90_A0A373NQ99	149.0	1.4013e-45	Helix-turn-helix domain-containing protein	N/A
Pfam	UHGV-0084708_3	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-0084708_3	PF20075,NF041951,COG3655	N/A	N/A	N/A	N/A
KOfam	UHGV-0084708_4	K14060	110.8	1.7e-32	pinR; putative DNA-invertase from lambdoid prophage Rac	N/A
PHROG	UHGV-0084708_4	phrog_125	173.5	0	DNA invertase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0084708_4	UniRef90_A0A373NRE9	376.0	0	Recombinase family protein	N/A
eggNOG-mapper	UHGV-0084708_4	476272.RUMHYD_01910	260.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-0084708_4	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
COG	UHGV-0084708_4	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0084708_4	PF00239,PF02796,NF009949,COG1961	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0084708_5	476272.RUMHYD_01911	139.0	4.15e-40	N/A	N/A
structural_annotation	UHGV-0084708_5	PF08962	N/A	N/A	N/A	N/A
PHROG	UHGV-0084708_15	phrog_14301	197.4	0	RNA ligase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0084708_15	UniRef90_UPI001881DCD7	179.0	0	N/A	N/A
eggNOG-mapper	UHGV-0084708_15	1429046.RR21198_4862	175.0	0	N/A	N/A
Pfam	UHGV-0084708_15	PF17720	N/A	N/A	N/A	DUF5565
structural_annotation	UHGV-0084708_15	PF17720	N/A	N/A	N/A	N/A
PHROG	UHGV-0084708_16	phrog_38	179.6	0	terminase large subunit	head and packaging
UniRef90	UHGV-0084708_16	UniRef90_A0A8D9PG33	500.0	0	Terminase	N/A
eggNOG-mapper	UHGV-0084708_16	1232453.BAIF02000058_gene1623	459.0	0	TIGRFAM Phage	N/A
COG	UHGV-0084708_16	COG5410	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0084708_16	PF17289,PF02562,MF_04147,NF033889,COG5362,COG5410	N/A	N/A	N/A	N/A
PHROG	UHGV-0084708_17	phrog_36	69.5	6.5e-20	transcriptional regulator	transcription regulation
UniRef90	UHGV-0084708_17	UniRef90_A0A373NRA4	261.0	0	N/A	N/A
eggNOG-mapper	UHGV-0084708_17	97138.C820_00221	70.5	0.000000000000165	sigma factor activity	N/A
Pfam	UHGV-0084708_17	PF07374	N/A	N/A	N/A	DUF1492
COG	UHGV-0084708_17	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
structural_annotation	UHGV-0084708_17	PF07374,MF_00674,NF008895,COG1342	N/A	N/A	N/A	N/A
PHROG	UHGV-0084708_18	phrog_64	181.2	0	portal protein	head and packaging
UniRef90	UHGV-0084708_18	UniRef90_A0A373NRD8	994.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0084708_18	1298920.KI911353_gene2663	573.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0084708_18	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0084708_18	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0084708_19	1298920.KI911353_gene2662	53.9	0.00000397	N/A	N/A
PHROG	UHGV-0084708_20	phrog_909	72.9	4e-21	major head protein	head and packaging
UniRef90	UHGV-0084708_20	UniRef90_K1TUL5	67.8	0.00000000000284	N/A	N/A
eggNOG-mapper	UHGV-0084708_20	1497679.EP56_02915	67.0	0.00000000000066	N/A	N/A
structural_annotation	UHGV-0084708_20	PF02924	N/A	N/A	N/A	N/A
PHROG	UHGV-0084708_21	phrog_29	152.7	2.8026e-45	major head protein	head and packaging
UniRef90	UHGV-0084708_21	UniRef90_A0A0E2H7J5	380.0	0	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0084708_21	1232443.BAIA02000078_gene29	279.0	0	Phage major capsid protein E	N/A
Pfam	UHGV-0084708_21	PF03864	N/A	N/A	Phage major capsid protein E	Phage_cap_E
structural_annotation	UHGV-0084708_21	PF03864,MF_04133,NF041162,COG4653	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0084708_22	476272.RUMHYD_01948	108.0	1.77e-29	N/A	N/A
PHROG	UHGV-0084708_23	phrog_937	60.9	7.6e-18	hemolysin	other
UniRef90	UHGV-0084708_24	UniRef90_A0A373NQ83	152.0	0	Sigma-70 family RNA polymerase sigma factor	N/A
Pfam	UHGV-0084708_24	PF04545	N/A	N/A	Sigma-70, region 4	Sigma70_r4
structural_annotation	UHGV-0084708_24	PF04545,MF_00674,NF001067,COG1342	N/A	N/A	N/A	N/A
PHROG	UHGV-0084708_25	phrog_21718	68.5	1.7e-20	N/A	unknown function
eggNOG-mapper	UHGV-0084708_25	476272.RUMHYD_01952	103.0	6.39e-26	N/A	N/A
eggNOG-mapper	UHGV-0084708_26	476272.RUMHYD_01953	109.0	2.04e-30	N/A	N/A
PHROG	UHGV-0084708_27	phrog_16490	225.0	0	N/A	unknown function
eggNOG-mapper	UHGV-0084708_27	1408437.JNJN01000043_gene803	183.0	0	N/A	N/A
eggNOG-mapper	UHGV-0084708_28	1408437.JNJN01000043_gene802	165.0	0	N/A	N/A
eggNOG-mapper	UHGV-0084708_30	397290.C810_01336	67.0	0.00000000000108	N/A	N/A
PHROG	UHGV-0084708_31	phrog_19695	59.9	7.7e-17	N/A	unknown function
eggNOG-mapper	UHGV-0084708_31	1232452.BAIB02000007_gene1611	92.0	7.54e-23	N/A	N/A
structural_annotation	UHGV-0084708_31	PF19714	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0084708_32	556261.HMPREF0240_03316	139.0	7.89e-35	GDSL-like Lipase/Acylhydrolase	N/A
structural_annotation	UHGV-0084708_33	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0084708_34	476272.RUMHYD_01963	94.0	8.67e-22	N/A	N/A
AcrCatalog	UHGV-0084708_34	cluster_24841	73.6	1.82e-18	NA	N/A
structural_annotation	UHGV-0084708_35	PF05657	N/A	N/A	N/A	N/A
PHROG	UHGV-0084708_36	phrog_1129	84.6	6.4e-25	holin	lysis
UniRef90	UHGV-0084708_36	UniRef90_UPI001D072DD9	131.0	7.75e-38	phage holin family protein	N/A
eggNOG-mapper	UHGV-0084708_36	1304866.K413DRAFT_0135	126.0	8.75e-37	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-0084708_36	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0084708_36	PF16079	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0084708_37	476272.RUMHYD_01968	214.0	0	N/A	N/A
structural_annotation	UHGV-0084708_37	PF16463,TIGR02241,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0084708_38	phrog_36112	154.8	0	N/A	unknown function
eggNOG-mapper	UHGV-0084708_38	476272.RUMHYD_01969	187.0	0	N/A	N/A
structural_annotation	UHGV-0084708_38	PF16478	N/A	N/A	N/A	N/A
PHROG	UHGV-0084708_40	phrog_28918	539.4	0	N/A	unknown function
UniRef90	UHGV-0084708_40	UniRef90_A0A1C5P271	397.0	0	Chromosome segregation protein	N/A
eggNOG-mapper	UHGV-0084708_40	97139.C824_02812	548.0	0	phage tail tape measure protein	N/A
COG	UHGV-0084708_40	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
KOfam	UHGV-0084708_41	K07451	51.3	0.000000000000016	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	N/A
PHROG	UHGV-0084708_41	phrog_16986	185.5	0	N/A	unknown function
UniRef90	UHGV-0084708_41	UniRef90_A0A843HQJ6	200.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0084708_41	411490.ANACAC_00801	177.0	0	endonuclease activity	N/A
Pfam	UHGV-0084708_41	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0084708_41	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
eggNOG-mapper	UHGV-0084708_42	1304866.K413DRAFT_3400	84.0	9.76e-19	N/A	N/A
eggNOG-mapper	UHGV-0084708_43	411473.RUMCAL_02525	148.0	5.60519e-45	N/A	N/A
eggNOG-mapper	UHGV-0084708_44	1235793.C809_00537	54.3	0.0000000104	N/A	N/A
PHROG	UHGV-0084708_45	phrog_4980	98.3	1e-29	superinfection exclusion	moron, auxiliary metabolic gene and host takeover
eggNOG-mapper	UHGV-0084708_45	1410658.JHWI01000002_gene18	58.5	0.000000215	translation initiation factor activity	N/A
Pfam	UHGV-0084708_45	PF07553	N/A	N/A	Host cell surface-exposed lipoprotein	Lipoprotein_Ltp
COG	UHGV-0084708_45	COG3064	N/A	N/A	Membrane protein TolA involved in colicin uptake	N/A
structural_annotation	UHGV-0084708_45	PF18933,PF02631,MF_02248,MF_01114,NF008627,NF001062,COG5435,COG2137	N/A	N/A	N/A	N/A
PHROG	UHGV-0084708_46	phrog_215	54.4	0.0000000000000015	structural protein with Ig domain	head and packaging
UniRef90	UHGV-0084708_46	UniRef90_A0A839JXV0	159.0	1.33123e-43	Ig domain-containing protein	N/A
eggNOG-mapper	UHGV-0084708_46	1410624.JNKK01000014_gene1631	65.1	0.00000000737	Bacterial Ig-like domain (group 2)	N/A
Pfam	UHGV-0084708_46	PF02368	N/A	N/A	Bacterial Ig-like domain (group 2)	Big_2
COG	UHGV-0084708_46	COG2304	N/A	N/A	Secreted protein containing bacterial Ig-like domain and vWFA domain	N/A
structural_annotation	UHGV-0084708_46	PF02368,PF07233,NF005261,COG5492	N/A	N/A	N/A	N/A
UniRef90	UHGV-0084708_47	UniRef90_A0A1C5WHU9	73.9	3.56e-16	Ribbon-helix-helix protein, copG family	N/A
eggNOG-mapper	UHGV-0084708_47	1378168.N510_02331	59.3	0.0000000000362	Ribbon-helix-helix protein, copG family	N/A
structural_annotation	UHGV-0084708_47	PF01402,NF041793,COG3905	N/A	N/A	N/A	N/A
KOfam	UHGV-0084708_48	K07741	57.3	5.7e-16	antB; anti-repressor protein	N/A
PHROG	UHGV-0084708_48	phrog_373	98.5	9e-29	anti-repressor	transcription regulation
UniRef90	UHGV-0084708_48	UniRef90_A0A373NQA0	499.0	0	Toxin Bro	N/A
eggNOG-mapper	UHGV-0084708_48	397290.C810_01343	271.0	0	AntA/AntB antirepressor	N/A
Pfam	UHGV-0084708_48	PF08346	N/A	N/A	AntA/AntB antirepressor	AntA
COG	UHGV-0084708_48	COG3561	N/A	N/A	Phage anti-repressor protein Ant	N/A
structural_annotation	UHGV-0084708_48	PF08346,TIGR02681,COG3561	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0084708_49	PF01017,TIGR02890	N/A	N/A	N/A	N/A
PHROG	UHGV-0084708_51	phrog_1194	123.0	1.3e-36	N/A	unknown function
eggNOG-mapper	UHGV-0084708_51	1117108.PAALTS15_13512	72.8	0.00000000000000669	N/A	N/A
structural_annotation	UHGV-0084708_51	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0084708_52	phrog_6616	714.6	0	tail protein	tail
UniRef90	UHGV-0084708_52	UniRef90_R5QUN9	886.0	0	Peptidase S74 domain-containing protein	N/A
eggNOG-mapper	UHGV-0084708_52	1121866.AUGK01000003_gene1439	302.0	0	Phage minor structural protein	N/A
COG	UHGV-0084708_52	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0084708_52	PF14594,NF033848,COG3500	N/A	N/A	N/A	N/A