UHGV-0085055 (vOTU-045221)

Viral Genome: UHGV-0085055

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0085055
vOTU ID	vOTU-045221
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_155669
Associated BioSample	SAMEA2784511
Viral genome confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100 (Complete)
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9769
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	33.86
Jumbo phage	No

Genome content
Genome length (bp)	39,361
GC content	36.26%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	70
CDS density	92%
Average CDS length (bps)	514.89
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
UniRef90	UHGV-0085055_3	UniRef90_A0A285PYI3	50.4	0.00000752	Homeodomain-like domain	N/A
structural_annotation	UHGV-0085055_3	PF02001,TIGR01636	N/A	N/A	N/A	N/A
PHROG	UHGV-0085055_8	phrog_10714	41.9	0.000000000015	N/A	unknown function
eggNOG-mapper	UHGV-0085055_8	428127.EUBDOL_01238	58.9	0.0000000014	N/A	N/A
UniRef90	UHGV-0085055_10	UniRef90_A0A6N7WVF3	60.8	0.00000000483	Restriction endonuclease subunit S	N/A
KOfam	UHGV-0085055_15	K01520	78.2	1.4e-22	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	N/A
PHROG	UHGV-0085055_15	phrog_135	99.7	2.6e-29	dUTPase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0085055_15	UniRef90_UPI001A9C69F1	180.0	0	dUTP diphosphatase	N/A
eggNOG-mapper	UHGV-0085055_15	12336.Q332E8_CBCP	177.0	0	dUTPase	N/A
Pfam	UHGV-0085055_15	PF00692	N/A	N/A	dUTPase	dUTPase
structural_annotation	UHGV-0085055_15	PF00692,MF_00116,NF010561,COG0756	N/A	N/A	N/A	N/A
PHROG	UHGV-0085055_16	phrog_9804	75.6	6.8e-22	N/A	unknown function
Pfam	UHGV-0085055_16	PF11417	N/A	N/A	Loader and inhibitor of phage G40P	Inhibitor_G39P
structural_annotation	UHGV-0085055_16	PF11417	N/A	N/A	N/A	N/A
PHROG	UHGV-0085055_17	phrog_6251	156.0	0	replisome organizer DnaA-like	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0085055_17	UniRef90_J8KNQ3	154.0	4.40008e-42	Phg_2220_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0085055_17	1243664.CAVL020000054_gene3045	150.0	2.36007e-41	dnaD_dom DnaD domain protein	N/A
Pfam	UHGV-0085055_17	PF09524	N/A	N/A	Conserved phage C-terminus (Phg_2220_C)	Phg_2220_C
NCBIFam	UHGV-0085055_17	TIGR02220.1	N/A	N/A	phage conserved hypothetical protein, C-terminal domain	N/A
COG	UHGV-0085055_17	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0085055_17	PF09524,PF04492,TIGR02220,TIGR01714	N/A	N/A	N/A	N/A
KOfam	UHGV-0085055_18	K01160	54.9	0.0000000000000026	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0085055_18	phrog_140	129.4	2.1e-38	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0085055_18	UniRef90_A0A1V4VEN0	121.0	8.44e-33	Endodeoxyribonuclease RusA	N/A
eggNOG-mapper	UHGV-0085055_18	1095750.HMPREF9970_1673	110.0	2.19e-29	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-0085055_18	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0085055_18	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0085055_18	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-0085055_19	phrog_1389	65.0	1.3e-18	N/A	unknown function
eggNOG-mapper	UHGV-0085055_19	883156.HMPREF9282_01223	83.2	3.65e-19	N/A	N/A
structural_annotation	UHGV-0085055_19	PF11056,TIGR04376,COG1842	N/A	N/A	N/A	N/A
KOfam	UHGV-0085055_20	K03111	119.7	4e-35	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0085055_20	phrog_44	126.2	2.6e-37	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0085055_20	UniRef90_UPI0003F64B7E	121.0	6.96e-33	single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0085055_20	562743.JH976434_gene1038	114.0	1.18e-30	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-0085055_20	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0085055_20	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0085055_20	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0085055_20	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0085055_20	PF00436,MF_00984,NF005580,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0085055_22	phrog_6244	99.5	3.5e-29	N/A	unknown function
eggNOG-mapper	UHGV-0085055_22	508419.F8J183_9CAUD	66.6	0.000000000000839	N/A	N/A
structural_annotation	UHGV-0085055_22	PF05565	N/A	N/A	N/A	N/A
PHROG	UHGV-0085055_23	phrog_14970	271.8	0	N/A	unknown function
UniRef90	UHGV-0085055_23	UniRef90_UPI00123F00F5	205.0	0	Rad52/Rad22 family DNA repair protein	N/A
eggNOG-mapper	UHGV-0085055_23	697329.Rumal_1121	203.0	0	double-strand break repair protein	N/A
COG	UHGV-0085055_23	COG4712	N/A	N/A	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	N/A
structural_annotation	UHGV-0085055_23	PF04098,TIGR00607,COG4712	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0085055_25	1294142.CINTURNW_2803	51.2	0.00000451	Helix-turn-helix XRE-family like proteins	N/A
COG	UHGV-0085055_25	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
Pfam	UHGV-0085055_26	PF14090	N/A	N/A	Helix-turn-helix domain	HTH_39
structural_annotation	UHGV-0085055_26	PF14090,NF040939,COG4738	N/A	N/A	N/A	N/A
KOfam	UHGV-0085055_27	K22300	58.7	1.5e-16	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0085055_27	phrog_8	61.2	2.6e-17	transcriptional regulator	transcription regulation
UniRef90	UHGV-0085055_27	UniRef90_A0A5F0MF03	61.6	0.000000000108	Transcriptional regulator	N/A
eggNOG-mapper	UHGV-0085055_27	272623.L80045	52.8	0.0000000525	Helix-turn-helix domain	N/A
Pfam	UHGV-0085055_27	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
COG	UHGV-0085055_27	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
Pfam	UHGV-0085055_28	PF12728	N/A	N/A	Helix-turn-helix domain	HTH_17
PHROG	UHGV-0085055_31	phrog_21141	53.3	0.0000000000000045	N/A	unknown function
eggNOG-mapper	UHGV-0085055_31	1265507.KB899636_gene1654	122.0	1.02e-33	N/A	N/A
AcrCatalog	UHGV-0085055_31	cluster_19223	117.0	3e-36	NA	N/A
structural_annotation	UHGV-0085055_31	PF04232,MF_01122,NF003088	N/A	N/A	N/A	N/A
KOfam	UHGV-0085055_32	K07488	48.6	0.00000000000012	K07488; transposase	N/A
PHROG	UHGV-0085055_32	phrog_25593	71.1	1.5e-20	N/A	unknown function
UniRef90	UHGV-0085055_32	UniRef90_A0A1C6DE58	178.0	0	Transposase and inactivated derivatives	N/A
eggNOG-mapper	UHGV-0085055_32	1504823.CCMM01000011_gene1569	178.0	0	transposition, DNA-mediated	N/A
Pfam	UHGV-0085055_32	PF12760	N/A	N/A	Transposase zinc-ribbon domain	Zn_Tnp_IS1595
COG	UHGV-0085055_32	COG3677	N/A	N/A	Transposase InsA	N/A
KOfam	UHGV-0085055_38	K22300	65.2	1.5e-18	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0085055_38	phrog_4	50.8	0.000000000000041	transcriptional repressor	transcription regulation
UniRef90	UHGV-0085055_38	UniRef90_A0A3D3T8Y1	108.0	9.71e-28	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0085055_38	1235797.C816_03553	99.8	1.49e-24	DNA-binding helix-turn-helix protein	N/A
Pfam	UHGV-0085055_38	PF12844	N/A	N/A	Helix-turn-helix domain	HTH_19
COG	UHGV-0085055_38	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0085055_38	PF01381,MF_00535,NF007257,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0085055_40	K14059	150.5	1.96182e-44	int; integrase	N/A
PHROG	UHGV-0085055_40	phrog_1	151.9	5.60519e-45	integrase	integration and excision
UniRef90	UHGV-0085055_40	UniRef90_A0A412PAQ5	267.0	0	Site-specific integrase	N/A
eggNOG-mapper	UHGV-0085055_40	1123263.AUKY01000072_gene2117	193.0	0	Phage integrase family	N/A
Pfam	UHGV-0085055_40	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0085055_40	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0085055_40	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0085055_41	PF13560,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0085055_44	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-0085055_45	phrog_16490	95.4	4.1e-28	N/A	unknown function
eggNOG-mapper	UHGV-0085055_45	397290.C810_05212	96.7	4.68e-21	N/A	N/A
PHROG	UHGV-0085055_46	phrog_21718	76.2	5.1e-22	N/A	unknown function
eggNOG-mapper	UHGV-0085055_46	397290.C810_05210	69.7	0.000000000000553	N/A	N/A
Pfam	UHGV-0085055_47	PF00196	N/A	N/A	Bacterial regulatory proteins, luxR family	GerE
structural_annotation	UHGV-0085055_47	PF07638,MF_00674,TIGR02954,COG1846	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0085055_49	PF10618	N/A	N/A	N/A	N/A
PHROG	UHGV-0085055_50	phrog_372	227.4	0	tail protein	tail
UniRef90	UHGV-0085055_50	UniRef90_A0A4D6AQF0	167.0	2.42004e-41	Capsid and scaffold protein	N/A
eggNOG-mapper	UHGV-0085055_50	556261.HMPREF0240_01282	151.0	3.01e-36	N/A	N/A
Pfam	UHGV-0085055_50	PF05895	N/A	N/A	N/A	DUF859
COG	UHGV-0085055_50	COG4675	N/A	N/A	Phage tail collar domain	N/A
structural_annotation	UHGV-0085055_50	PF05895,MF_04116,NF010681,COG3291	N/A	N/A	N/A	N/A
KOfam	UHGV-0085055_51	K19721	58.7	2.1e-17	COL5AS; collagen type V/XI/XXIV/XXVII, alpha	N/A
PHROG	UHGV-0085055_51	phrog_1067	349.2	0	minor head protein	head and packaging
UniRef90	UHGV-0085055_51	UniRef90_A0A5F0K234	272.0	0	Peptidase S74 domain-containing protein	N/A
eggNOG-mapper	UHGV-0085055_51	1123263.AUKY01000068_gene489	395.0	0	Phage minor structural protein	N/A
Pfam	UHGV-0085055_51	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
Pfam	UHGV-0085055_51	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
Pfam	UHGV-0085055_51	PF11839	N/A	N/A	Alanine-zipper, major outer membrane lipoprotein	Alanine_zipper
NCBIFam	UHGV-0085055_51	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0085055_51	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0085055_51	PF14594,PF00629,TIGR01665,NF033675,COG4926,COG3506	N/A	N/A	N/A	N/A
UniRef90	UHGV-0085055_52	UniRef90_A0A1C5W6B6	160.0	2.8026e-45	Phage-related protein	N/A
eggNOG-mapper	UHGV-0085055_52	1497679.EP56_07715	86.7	1.12e-17	tail component	N/A
COG	UHGV-0085055_52	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0085055_52	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0085055_53	phrog_58	223.0	0	tail length tape measure protein	tail
UniRef90	UHGV-0085055_53	UniRef90_A0A1C6EH41	191.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0085055_53	471855.Shel_15470	253.0	0	Phage tail tape measure protein TP901	N/A
COG	UHGV-0085055_53	COG5412	N/A	N/A	Phage-related protein	N/A
PHROG	UHGV-0085055_55	phrog_881	74.8	6.9e-22	holin	lysis
UniRef90	UHGV-0085055_55	UniRef90_A0A7Y0HUK7	72.0	0.00000000000000807	Holin	N/A
eggNOG-mapper	UHGV-0085055_55	326426.Bbr_0318	72.0	0.00000000000000139	Putative phage holin Dp-1	N/A
Pfam	UHGV-0085055_55	PF16938	N/A	N/A	Putative phage holin Dp-1	Phage_holin_Dp1
structural_annotation	UHGV-0085055_55	PF16938	N/A	N/A	N/A	N/A
PHROG	UHGV-0085055_56	phrog_11037	50.3	0.00000000000004	N/A	unknown function
UniRef90	UHGV-0085055_56	UniRef90_A0A2V2EB84	81.6	0.00000000000000946	EF-hand domain-containing protein	N/A
eggNOG-mapper	UHGV-0085055_56	1235796.C815_00900	73.6	0.00000000000245	N/A	N/A
Pfam	UHGV-0085055_56	PF08239	N/A	N/A	Bacterial SH3 domain	SH3_3
structural_annotation	UHGV-0085055_56	PF08460,PF01551,NF040883,NF033202,COG0739,COG4991	N/A	N/A	N/A	N/A
PHROG	UHGV-0085055_59	phrog_885	75.2	7.2e-22	major tail protein	tail
UniRef90	UHGV-0085055_59	UniRef90_A0A843J9F0	164.0	0	Ig-like domain-containing protein	N/A
eggNOG-mapper	UHGV-0085055_59	1111121.HMPREF1247_0789	204.0	0	N/A	N/A
structural_annotation	UHGV-0085055_59	PF06488,TIGR01603,COG5437	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0085055_60	PF11367	N/A	N/A	N/A	N/A
PHROG	UHGV-0085055_61	phrog_17977	76.8	2.3e-22	N/A	unknown function
UniRef90	UHGV-0085055_61	UniRef90_A0A285PT57	129.0	1.19e-36	Phage head-tail joining protein	N/A
Pfam	UHGV-0085055_61	PF05521	N/A	N/A	Phage head-tail joining protein	Phage_H_T_join
structural_annotation	UHGV-0085055_61	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0085055_63	phrog_544	219.2	0	major head protein	head and packaging
UniRef90	UHGV-0085055_63	UniRef90_A0A0D0SBF1	424.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0085055_63	1256908.HMPREF0373_00476	443.0	0	N/A	N/A
NCBIFam	UHGV-0085055_63	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-0085055_63	PF05065,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0085055_64	phrog_194	42.8	0.00000000001	head scaffolding protein	head and packaging
eggNOG-mapper	UHGV-0085055_64	320843.Q4ZBR6_9CAUD	52.4	0.00000925	Phage minor structural protein GP20	N/A
structural_annotation	UHGV-0085055_64	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-0085055_65	phrog_5	82.5	7.6e-24	tail completion or Neck1 protein	connector
UniRef90	UHGV-0085055_65	UniRef90_A0A6A8M6L6	108.0	5.39e-28	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0085055_65	1504822.CCNO01000013_gene284	104.0	1.58e-27	Bacteriophage HK97-gp10, putative tail-component	N/A
Pfam	UHGV-0085055_65	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
NCBIFam	UHGV-0085055_65	TIGR01725.1	N/A	N/A	HK97-gp10 family putative phage morphogenesis protein	N/A
structural_annotation	UHGV-0085055_65	PF05069,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-0085055_67	phrog_595	109.2	4.6e-32	head maturation protease	head and packaging
UniRef90	UHGV-0085055_67	UniRef90_A0A285PUG1	226.0	0	Phage head morphogenesis domain	N/A
eggNOG-mapper	UHGV-0085055_67	1280685.AUKC01000004_gene1632	189.0	0	Phage Mu protein F like protein	N/A
Pfam	UHGV-0085055_67	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
COG	UHGV-0085055_67	COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-0085055_68	phrog_64	153.3	1.4013e-45	portal protein	head and packaging
UniRef90	UHGV-0085055_68	UniRef90_A0A285PU84	421.0	0	Phage portal protein, SPP1 Gp6-like	N/A
eggNOG-mapper	UHGV-0085055_68	673376.F2VHW1_9CAUD	222.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0085055_68	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0085055_68	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
KOfam	UHGV-0085055_69	K06909	96.8	2.1e-28	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0085055_69	phrog_10250	162.2	0	N/A	unknown function
UniRef90	UHGV-0085055_69	UniRef90_A0A2N2CXF0	446.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0085055_69	1032362.F6K8Q6_9CAUD	313.0	0	DNA packaging	N/A
Pfam	UHGV-0085055_69	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
NCBIFam	UHGV-0085055_69	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
structural_annotation	UHGV-0085055_69	PF04466,PF20441,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A