UHGV-0085895 (vOTU-063983)

Viral Genome: UHGV-0085895

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0085895
vOTU ID	vOTU-063983
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_167674
Associated BioSample	SAMEA3178936
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	94.15 (High-quality)
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9782
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	19.92
Jumbo phage	No

Genome content
Genome length (bp)	36,181
GC content	47.91%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	61
CDS density	92%
Average CDS length (bps)	547.57
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 94.15)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0085895_1	K14059	163.4	0	int; integrase	N/A
PHROG	UHGV-0085895_1	phrog_1	156.3	0	integrase	integration and excision
UniRef90	UHGV-0085895_1	UniRef90_A0A417GFS1	687.0	0	Site-specific integrase	N/A
eggNOG-mapper	UHGV-0085895_1	1304866.K413DRAFT_3002	303.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0085895_1	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0085895_1	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0085895_1	PF00589,PF12167,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-0085895_2	phrog_31229	115.8	2.3e-34	N/A	unknown function
eggNOG-mapper	UHGV-0085895_2	1121333.JMLH01000001_gene1904	134.0	3.79e-39	N/A	N/A
UniRef90	UHGV-0085895_3	UniRef90_A0A1F8LWI8	227.0	0	Flg_new_2 domain-containing protein	N/A
eggNOG-mapper	UHGV-0085895_3	1280676.AUJO01000035_gene2160	246.0	0	N/A	N/A
structural_annotation	UHGV-0085895_3	PF07718,PF02883,NF007398,COG3121	N/A	N/A	N/A	N/A
PHROG	UHGV-0085895_4	phrog_87	80.4	1.8e-23	metallo-protease	other
UniRef90	UHGV-0085895_4	UniRef90_A0A396LGB6	158.0	0	ImmA/IrrE family metallo-endopeptidase	N/A
eggNOG-mapper	UHGV-0085895_4	553973.CLOHYLEM_07298	131.0	7.83e-37	IrrE N-terminal-like domain	N/A
Pfam	UHGV-0085895_4	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
COG	UHGV-0085895_4	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-0085895_4	PF06114,COG2856	N/A	N/A	N/A	N/A
KOfam	UHGV-0085895_5	K22299	40.5	0.000000000046	rghR; HTH-type transcriptional regulator, competence development regulator	N/A
UniRef90	UHGV-0085895_5	UniRef90_UPI001BC112C2	189.0	0	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0085895_5	33035.JPJF01000055_gene1671	105.0	2.21e-28	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-0085895_5	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0085895_5	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0085895_5	PF13443,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
UniRef90	UHGV-0085895_6	UniRef90_UPI001BBB62AE	131.0	1.09e-38	Helix-turn-helix transcriptional regulator	N/A
structural_annotation	UHGV-0085895_6	PF05339,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0085895_7	phrog_643	44.3	0.0000000000033	transcriptional regulator	transcription regulation
UniRef90	UHGV-0085895_7	UniRef90_UPI001921B44D	109.0	5.52e-30	aspartate ammonia-lyase	N/A
eggNOG-mapper	UHGV-0085895_7	562743.JH976434_gene1050	53.5	0.0000000138	N/A	N/A
structural_annotation	UHGV-0085895_7	PF11195	N/A	N/A	N/A	N/A
PHROG	UHGV-0085895_8	phrog_750	119.7	1.1e-35	N/A	unknown function
eggNOG-mapper	UHGV-0085895_8	478749.BRYFOR_08527	114.0	1.68e-31	N/A	N/A
structural_annotation	UHGV-0085895_8	PF13835,NF040858	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0085895_9	1217656.F964_02233	48.1	0.00000369	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0085895_9	PF13384	N/A	N/A	Homeodomain-like domain	HTH_23
COG	UHGV-0085895_9	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
PHROG	UHGV-0085895_15	phrog_30234	48.5	0.0000000000000093	N/A	unknown function
eggNOG-mapper	UHGV-0085895_15	33035.JPJF01000071_gene4461	84.0	6.4e-21	N/A	N/A
PHROG	UHGV-0085895_16	phrog_14970	299.0	0	N/A	unknown function
eggNOG-mapper	UHGV-0085895_16	411468.CLOSCI_00315	228.0	0	double-strand break repair protein	N/A
COG	UHGV-0085895_16	COG4712	N/A	N/A	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	N/A
structural_annotation	UHGV-0085895_16	PF04098,TIGR00607,COG4712	N/A	N/A	N/A	N/A
PHROG	UHGV-0085895_17	phrog_72	52.8	0.0000000000000061	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0085895_17	411468.CLOSCI_00314	147.0	3.58032e-42	N/A	N/A
structural_annotation	UHGV-0085895_17	PF05772,NF007281	N/A	N/A	N/A	N/A
PHROG	UHGV-0085895_18	phrog_7566	91.8	4.5e-27	N/A	unknown function
UniRef90	UHGV-0085895_18	UniRef90_A0A417GG52	215.0	0	Phosphoenolpyruvate carboxykinase	N/A
eggNOG-mapper	UHGV-0085895_18	1304866.K413DRAFT_1198	67.8	0.000000000000171	N/A	N/A
PHROG	UHGV-0085895_19	phrog_4880	71.6	9.9e-21	replisome organizer	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0085895_19	796940.HMPREF9628_00167	132.0	1.52e-33	N/A	N/A
COG	UHGV-0085895_19	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0085895_19	PF03444,MF_01911,TIGR01610,COG5529	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0085895_20	PF04703,MF_01909,NF033788,COG0640	N/A	N/A	N/A	N/A
UniRef90	UHGV-0085895_22	UniRef90_A0A3R6U5B0	246.0	0	LexA_DNA_bind domain-containing protein	N/A
Pfam	UHGV-0085895_22	PF01726	N/A	N/A	LexA DNA binding domain	LexA_DNA_bind
COG	UHGV-0085895_22	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
PHROG	UHGV-0085895_24	phrog_424	102.6	4.5e-30	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0085895_24	UniRef90_A0A173Z178	254.0	0	PUA domain (Predicted RNA-binding domain)	N/A
eggNOG-mapper	UHGV-0085895_24	397291.C804_06557	250.0	0	N/A	N/A
PADLOC	UHGV-0085895_24	SspD_00001	44.5	0.00000000000082	SspD	SSP
COG	UHGV-0085895_24	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-0085895_24	PF01507,MF_01161,NF005316,COG1606	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0085895_25	1235800.C819_02246	55.1	0.000000725	N/A	N/A
PHROG	UHGV-0085895_27	phrog_6568	59.9	3.4e-17	N/A	unknown function
eggNOG-mapper	UHGV-0085895_27	742733.HMPREF9469_05046	52.8	0.0000000187	N/A	N/A
PHROG	UHGV-0085895_28	phrog_36	57.9	2.1e-16	transcriptional regulator	transcription regulation
UniRef90	UHGV-0085895_28	UniRef90_A0A417GFN5	257.0	0	RNA polymerase subunit sigma-70	N/A
eggNOG-mapper	UHGV-0085895_28	411902.CLOBOL_05672	171.0	0	N/A	N/A
structural_annotation	UHGV-0085895_28	PF02996	N/A	N/A	N/A	N/A
KOfam	UHGV-0085895_30	K07474	151.1	1.12104e-44	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-0085895_30	phrog_51	142.5	2.20004e-42	terminase small subunit	head and packaging
UniRef90	UHGV-0085895_30	UniRef90_A0A3R6UIT1	330.0	0	Terminase small subunit	N/A
eggNOG-mapper	UHGV-0085895_30	1321778.HMPREF1982_02686	200.0	0	Terminase Small Subunit	N/A
Pfam	UHGV-0085895_30	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-0085895_30	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-0085895_30	PF03592,COG3728	N/A	N/A	N/A	N/A
KOfam	UHGV-0085895_31	K06909	93.6	2.7e-27	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0085895_31	phrog_2	85.5	9.6e-25	terminase large subunit	head and packaging
UniRef90	UHGV-0085895_31	UniRef90_UPI000B896FAD	785.0	0	terminase family protein	N/A
eggNOG-mapper	UHGV-0085895_31	1282664.H354_06621	669.0	0	Phage terminase, large subunit, PBSX family	N/A
COG	UHGV-0085895_31	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0085895_31	PF03237,PF17289,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0085895_32	phrog_533	285.0	0	portal protein	head and packaging
UniRef90	UHGV-0085895_32	UniRef90_A0A417GP99	1058.0	0	Capsid protein	N/A
eggNOG-mapper	UHGV-0085895_32	742740.HMPREF9474_03501	759.0	0	N/A	N/A
structural_annotation	UHGV-0085895_32	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0085895_33	phrog_25639	128.1	1.8e-38	N/A	unknown function
eggNOG-mapper	UHGV-0085895_33	742740.HMPREF9474_03502	103.0	5.65e-28	N/A	N/A
PHROG	UHGV-0085895_34	phrog_581	252.6	0	minor head protein	head and packaging
UniRef90	UHGV-0085895_34	UniRef90_A0A417GP81	938.0	0	ADPrib_exo_Tox domain-containing protein	N/A
eggNOG-mapper	UHGV-0085895_34	742740.HMPREF9474_03503	484.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-0085895_34	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0085895_34	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0085895_34	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-0085895_36	phrog_3675	104.0	7.3e-31	N/A	unknown function
UniRef90	UHGV-0085895_36	UniRef90_A0A3E2UCU7	211.0	0	Dihydrolipoyl dehydrogenase	N/A
eggNOG-mapper	UHGV-0085895_36	585501.HMPREF6123_0838	129.0	2.01e-37	YjcQ protein	N/A
Pfam	UHGV-0085895_36	PF09639	N/A	N/A	YjcQ protein	YjcQ
structural_annotation	UHGV-0085895_36	PF09639,TIGR04176,COG2345	N/A	N/A	N/A	N/A
PHROG	UHGV-0085895_37	phrog_774	66.0	7.1e-19	N/A	unknown function
eggNOG-mapper	UHGV-0085895_37	397290.C810_05225	122.0	2.24e-35	N/A	N/A
PHROG	UHGV-0085895_38	phrog_2303	131.5	2.4e-39	head scaffolding protein	head and packaging
eggNOG-mapper	UHGV-0085895_38	1304866.K413DRAFT_0806	201.0	0	N/A	N/A
COG	UHGV-0085895_39	COG3266	N/A	N/A	Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain	N/A
PHROG	UHGV-0085895_40	phrog_422	343.7	0	major head protein	head and packaging
UniRef90	UHGV-0085895_40	UniRef90_A0A417GPA1	597.0	0	Capsid protein	N/A
eggNOG-mapper	UHGV-0085895_40	742740.HMPREF9474_03505	502.0	0	N/A	N/A
structural_annotation	UHGV-0085895_40	PF19821,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0085895_41	phrog_1378	85.6	3.7e-25	N/A	unknown function
eggNOG-mapper	UHGV-0085895_41	742740.HMPREF9474_03506	82.4	3.04e-19	N/A	N/A
PHROG	UHGV-0085895_42	phrog_541	81.1	1.1e-23	head-tail adaptor	connector
eggNOG-mapper	UHGV-0085895_42	1298920.KI911353_gene4848	175.0	0	N/A	N/A
PHROG	UHGV-0085895_43	phrog_8710	127.8	4e-38	N/A	unknown function
eggNOG-mapper	UHGV-0085895_43	33035.JPJF01000093_gene2249	138.0	3.85007e-41	N/A	N/A
structural_annotation	UHGV-0085895_43	PF10665,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0085895_44	phrog_556	62.1	8.7e-18	minor head protein	head and packaging
eggNOG-mapper	UHGV-0085895_44	742740.HMPREF9474_03509	175.0	0	N/A	N/A
PHROG	UHGV-0085895_45	phrog_2595	92.2	4.5e-27	head-tail connector protein	connector
UniRef90	UHGV-0085895_45	UniRef90_UPI001D0627B3	146.0	7.84727e-43	minor capsid protein	N/A
eggNOG-mapper	UHGV-0085895_45	33035.JPJF01000093_gene2247	154.0	0	N/A	N/A
Pfam	UHGV-0085895_45	PF12691	N/A	N/A	Bacteriophage minor capsid protein	Minor_capsid_3
structural_annotation	UHGV-0085895_45	PF12691,COG5003	N/A	N/A	N/A	N/A
PHROG	UHGV-0085895_46	phrog_820	119.5	1.7e-35	major tail protein	tail
eggNOG-mapper	UHGV-0085895_46	33035.JPJF01000093_gene2246	243.0	0	N/A	N/A
structural_annotation	UHGV-0085895_46	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0085895_47	phrog_8300	70.9	1.8e-20	N/A	unknown function
eggNOG-mapper	UHGV-0085895_47	585501.HMPREF6123_0828	85.9	1.2e-20	N/A	N/A
structural_annotation	UHGV-0085895_47	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0085895_48	phrog_8355	111.5	2.1e-33	N/A	unknown function
UniRef90	UHGV-0085895_48	UniRef90_UPI001D0684E3	118.0	1.28e-32	bacteriophage Gp15 family protein	N/A
eggNOG-mapper	UHGV-0085895_48	33035.JPJF01000093_gene2244	104.0	4.23e-28	N/A	N/A
Pfam	UHGV-0085895_48	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0085895_48	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0085895_49	phrog_1535	238.2	0	tail length tape measure protein	tail
UniRef90	UHGV-0085895_49	UniRef90_A0A174SV65	663.0	0	Phage-like protein	N/A
eggNOG-mapper	UHGV-0085895_49	742740.HMPREF9474_03514	518.0	0	tape measure	N/A
COG	UHGV-0085895_49	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-0085895_49	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-0085895_50	phrog_1194	77.3	1.8e-22	N/A	unknown function
eggNOG-mapper	UHGV-0085895_50	742740.HMPREF9474_03515	175.0	0	N/A	N/A
structural_annotation	UHGV-0085895_50	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0085895_51	phrog_13879	394.0	0	N/A	unknown function
eggNOG-mapper	UHGV-0085895_51	742740.HMPREF9474_03516	996.0	0	N/A	N/A
structural_annotation	UHGV-0085895_51	PF03256,PF16466,PF13550,MF_00813,NF033848,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-0085895_52	phrog_18725	115.3	5.1e-34	N/A	unknown function
eggNOG-mapper	UHGV-0085895_52	1298920.KI911353_gene4838	216.0	0	N/A	N/A
eggNOG-mapper	UHGV-0085895_53	1298920.KI911353_gene4837	144.0	3.03942e-42	N/A	N/A
PHROG	UHGV-0085895_54	phrog_13589	80.7	4.9e-24	N/A	unknown function
eggNOG-mapper	UHGV-0085895_54	1298920.KI911353_gene541	109.0	9.61e-26	ATPase involved in DNA repair	N/A
COG	UHGV-0085895_54	COG0419	N/A	N/A	DNA repair exonuclease SbcCD ATPase subunit	N/A
structural_annotation	UHGV-0085895_54	PF21253,NF038128	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0085895_55	PF21253,NF038128,COG5156	N/A	N/A	N/A	N/A
PHROG	UHGV-0085895_57	phrog_1129	69.0	5e-20	holin	lysis
UniRef90	UHGV-0085895_57	UniRef90_UPI0013F5D614	144.0	3.62936e-43	phage holin family protein	N/A
eggNOG-mapper	UHGV-0085895_57	742740.HMPREF9474_03522	111.0	5.24e-31	N/A	N/A
Pfam	UHGV-0085895_57	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0085895_57	PF06946	N/A	N/A	N/A	N/A
KOfam	UHGV-0085895_60	K11062	171.5	0	entD; probable enterotoxin D	N/A
PHROG	UHGV-0085895_60	phrog_1794	175.0	0	amidase	lysis
UniRef90	UHGV-0085895_60	UniRef90_D6DIW1	510.0	0	Negative regulator of beta-lactamase expression	N/A
eggNOG-mapper	UHGV-0085895_60	1304866.K413DRAFT_1930	305.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-0085895_60	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
COG	UHGV-0085895_60	COG5632	N/A	N/A	N-acetylmuramoyl-L-alanine amidase CwlA	N/A
structural_annotation	UHGV-0085895_60	PF01510,PF18342,MF_04111,NF008758,NF033202,COG5632	N/A	N/A	N/A	N/A
PHROG	UHGV-0085895_61	phrog_18218	145.6	7.9874e-44	N/A	unknown function
eggNOG-mapper	UHGV-0085895_61	742733.HMPREF9469_02858	159.0	0	N/A	N/A