UHGV-0086318 (vOTU-025141)

Viral Genome: UHGV-0086318

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0086318
vOTU ID	vOTU-025141
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_199765
Associated BioSample	SAMEA3449244
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	67.09 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9781
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	31.24
Jumbo phage	No

Genome content
Genome length (bp)	29,368
GC content	46.83%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	51
CDS density	94%
Average CDS length (bps)	539.71
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 67.09)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0086318_2	K14059	191.0	0	int; integrase	N/A
PHROG	UHGV-0086318_2	phrog_1	181.0	0	integrase	integration and excision
UniRef90	UHGV-0086318_2	UniRef90_A0A316PVZ6	580.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-0086318_2	445335.CBN_3017	109.0	6.69e-24	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0086318_2	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0086318_2	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0086318_2	PF00589,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
KOfam	UHGV-0086318_3	K07171	58.0	4.5e-17	mazF, ndoA, chpA; mRNA interferase MazF [EC:3.1.-.-]	N/A
PHROG	UHGV-0086318_3	phrog_1412	171.0	0	antitoxin mazE-like	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0086318_3	UniRef90_UPI0002D17C33	201.0	0	type II toxin-antitoxin system PemK/MazF family toxin	N/A
eggNOG-mapper	UHGV-0086318_3	1235792.C808_05257	190.0	0	Toxic component of a toxin-antitoxin (TA) module	N/A
Pfam	UHGV-0086318_3	PF02452	N/A	N/A	PemK-like, MazF-like toxin of type II toxin-antitoxin system	PemK_toxin
COG	UHGV-0086318_3	COG2337	N/A	N/A	mRNA-degrading endonuclease MazF, toxin component of the MazEF toxin-antitoxin module	N/A
structural_annotation	UHGV-0086318_3	PF02452,NF007386,COG2337	N/A	N/A	N/A	N/A
COG	UHGV-0086318_4	COG2333	N/A	N/A	DNA uptake channel protein ComEC C-terminal domain, metallo-beta-lactamase superfamily	N/A
structural_annotation	UHGV-0086318_4	PF02805	N/A	N/A	N/A	N/A
KOfam	UHGV-0086318_5	K01356	145.4	6.50202e-43	lexA; repressor LexA [EC:3.4.21.88]	N/A
PHROG	UHGV-0086318_5	phrog_4	125.0	7.1e-37	transcriptional repressor	transcription regulation
UniRef90	UHGV-0086318_5	UniRef90_U2L7Z5	218.0	0	Putative repressor LexA	N/A
eggNOG-mapper	UHGV-0086318_5	1321784.HMPREF1987_01096	218.0	0	Peptidase S24-like	N/A
Pfam	UHGV-0086318_5	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
Pfam	UHGV-0086318_5	PF00717	N/A	N/A	Peptidase S24-like	Peptidase_S24
COG	UHGV-0086318_5	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-0086318_5	PF00717,PF12844,MF_00015,TIGR00498,COG1974	N/A	N/A	N/A	N/A
KOfam	UHGV-0086318_6	K22300	43.6	0.0000000000066	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
UniRef90	UHGV-0086318_6	UniRef90_A0A6L9H3N2	80.5	1.6e-18	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0086318_6	1321782.HMPREF1986_02244	74.3	1.03e-16	Helix-turn-helix domain	N/A
Pfam	UHGV-0086318_6	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0086318_6	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0086318_6	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
UniRef90	UHGV-0086318_10	UniRef90_A0A1C5T7T8	87.8	2.62e-21	DNA binding domain, excisionase family	N/A
Pfam	UHGV-0086318_10	PF12728	N/A	N/A	Helix-turn-helix domain	HTH_17
NCBIFam	UHGV-0086318_10	TIGR01764.1	N/A	N/A	excisionase family DNA-binding protein	N/A
COG	UHGV-0086318_10	COG3311	N/A	N/A	DNA-binding transcriptional regulator AlpA	N/A
structural_annotation	UHGV-0086318_10	PF12728,TIGR01764,COG3311	N/A	N/A	N/A	N/A
KOfam	UHGV-0086318_13	K07455	197.2	0	recT; recombination protein RecT	N/A
PHROG	UHGV-0086318_13	phrog_148	233.2	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0086318_13	UniRef90_A0A410PYU3	328.0	0	Recombinase RecT	N/A
eggNOG-mapper	UHGV-0086318_13	1499683.CCFF01000017_gene2606	280.0	0	RecT family	N/A
Pfam	UHGV-0086318_13	PF03837	N/A	N/A	RecT family	RecT
COG	UHGV-0086318_13	COG3723	N/A	N/A	Recombinational DNA repair protein RecT	N/A
structural_annotation	UHGV-0086318_13	PF03837,NF007351,COG3723	N/A	N/A	N/A	N/A
PHROG	UHGV-0086318_14	phrog_1227	235.5	0	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0086318_14	UniRef90_A0A410PWZ9	334.0	0	N/A	N/A
eggNOG-mapper	UHGV-0086318_14	431943.CKL_1894	167.0	0	N/A	N/A
Pfam	UHGV-0086318_14	PF12684	N/A	N/A	N/A	DUF3799
COG	UHGV-0086318_14	COG1074	N/A	N/A	3'-5' helicase subunit RecB of the DNA repair enzyme RecBCD (exonuclease V)	N/A
structural_annotation	UHGV-0086318_14	PF12684,TIGR01896,COG4343	N/A	N/A	N/A	N/A
PHROG	UHGV-0086318_16	phrog_2514	97.3	1.6e-28	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0086318_16	411468.CLOSCI_00311	97.1	1.88e-21	Transcriptional regulator	N/A
COG	UHGV-0086318_16	COG1846	N/A	N/A	DNA-binding transcriptional regulator, MarR family	N/A
PHROG	UHGV-0086318_19	phrog_190	117.9	7.8e-35	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0086318_19	UniRef90_UPI0002F780B1	106.0	6.26e-26	N/A	N/A
eggNOG-mapper	UHGV-0086318_19	342113.DM82_1124	105.0	1.48e-26	N/A	N/A
Pfam	UHGV-0086318_19	PF06356	N/A	N/A	N/A	DUF1064
eggNOG-mapper	UHGV-0086318_20	411459.RUMOBE_01111	72.4	0.0000000000000394	N/A	N/A
PHROG	UHGV-0086318_21	phrog_954	210.9	0	DNA methyltransferase	other
UniRef90	UHGV-0086318_21	UniRef90_A0A1C7GBP2	253.0	0	Methyltransferase	N/A
eggNOG-mapper	UHGV-0086318_21	679201.HMPREF9334_00469	214.0	0	methyltransferase	N/A
PADLOC	UHGV-0086318_21	MTase_II_00074	215.2	0	Type II methyltransferase	RM
Pfam	UHGV-0086318_21	PF08241	N/A	N/A	Methyltransferase domain	Methyltransf_11
COG	UHGV-0086318_21	COG0500	N/A	N/A	SAM-dependent methyltransferase	N/A
structural_annotation	UHGV-0086318_21	PF05148,MF_00735,NF033398,COG1041	N/A	N/A	N/A	N/A
PHROG	UHGV-0086318_22	phrog_986	93.9	1.4e-27	RNA-binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0086318_22	UniRef90_A0A843H0R6	112.0	1.01e-30	N/A	N/A
eggNOG-mapper	UHGV-0086318_22	226185.EF_2118	72.4	0.00000000000000963	N/A	N/A
Pfam	UHGV-0086318_22	PF12961	N/A	N/A	N/A	DUF3850
structural_annotation	UHGV-0086318_22	PF12961,MF_00684,NF003443,COG4043	N/A	N/A	N/A	N/A
PHROG	UHGV-0086318_23	phrog_7674	154.7	0	N/A	unknown function
eggNOG-mapper	UHGV-0086318_23	768710.DesyoDRAFT_1081	175.0	0	N/A	N/A
structural_annotation	UHGV-0086318_23	PF06003	N/A	N/A	N/A	N/A
KOfam	UHGV-0086318_28	K07451	47.6	0.00000000000034	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	N/A
PHROG	UHGV-0086318_28	phrog_2118	118.2	5.4e-35	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0086318_28	UniRef90_UPI000C7C6540	140.0	5.70001e-40	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0086318_28	610130.Closa_0730	123.0	5.69e-34	HNH endonuclease	N/A
Pfam	UHGV-0086318_28	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0086318_28	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
KOfam	UHGV-0086318_31	K03111	147.8	1.09301e-43	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0086318_31	phrog_44	149.2	2.24208e-44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0086318_31	UniRef90_A0A1C5T9Y0	207.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0086318_31	1120998.AUFC01000019_gene325	188.0	0	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-0086318_31	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0086318_31	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0086318_31	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0086318_31	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0086318_31	PF00436,MF_00984,NF005580,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0086318_34	phrog_25385	77.0	2.1e-22	N/A	unknown function
eggNOG-mapper	UHGV-0086318_34	748224.HMPREF9436_03077	61.2	0.000000000647	N/A	N/A
KOfam	UHGV-0086318_36	K07474	137.0	2.2e-40	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-0086318_36	phrog_51	133.0	1.7e-39	terminase small subunit	head and packaging
UniRef90	UHGV-0086318_36	UniRef90_UPI001379A213	168.0	0	terminase small subunit	N/A
eggNOG-mapper	UHGV-0086318_36	445971.ANASTE_00710	132.0	6.48e-37	Terminase small subunit	N/A
Pfam	UHGV-0086318_36	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-0086318_36	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-0086318_36	PF03592,COG3728	N/A	N/A	N/A	N/A
KOfam	UHGV-0086318_37	K06909	135.4	5e-40	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0086318_37	phrog_979	133.6	2.70002e-41	terminase large subunit	head and packaging
UniRef90	UHGV-0086318_37	UniRef90_UPI001CF909A5	603.0	0	phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0086318_37	1410650.JHWL01000003_gene2834	563.0	0	N/A	N/A
Pfam	UHGV-0086318_37	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-0086318_37	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0086318_37	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0086318_38	phrog_156	323.0	0	portal protein	head and packaging
eggNOG-mapper	UHGV-0086318_38	748224.HMPREF9436_01396	478.0	0	N/A	N/A
structural_annotation	UHGV-0086318_38	PF16510,MF_04120,TIGR01538,COG5518	N/A	N/A	N/A	N/A
Pfam	UHGV-0086318_39	PF04327	N/A	N/A	Cysteine protease Prp	Peptidase_Prp
PHROG	UHGV-0086318_40	phrog_13908	232.5	0	N/A	unknown function
eggNOG-mapper	UHGV-0086318_40	1410650.JHWL01000003_gene2831	98.2	7.14e-21	N/A	N/A
PHROG	UHGV-0086318_41	phrog_1357	278.9	0	major head protein	head and packaging
UniRef90	UHGV-0086318_41	UniRef90_UPI000B8B3F29	374.0	0	N4-gp56 family major capsid protein	N/A
eggNOG-mapper	UHGV-0086318_41	1449126.JQKL01000003_gene1695	342.0	0	N/A	N/A
Pfam	UHGV-0086318_41	PF13252	N/A	N/A	N/A	DUF4043
NCBIFam	UHGV-0086318_41	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-0086318_41	PF13252,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0086318_42	phrog_15239	76.6	2.6e-22	N/A	unknown function
eggNOG-mapper	UHGV-0086318_42	1449126.JQKL01000003_gene1694	52.4	0.00000161	N/A	N/A
UniRef90	UHGV-0086318_43	UniRef90_UPI001CF901D5	271.0	0	phage baseplate upper protein	N/A
Pfam	UHGV-0086318_43	PF10651	N/A	N/A	BppU N-terminal domain	BppU_N
Pfam	UHGV-0086318_43	PF18454	N/A	N/A	Major tropism determinant N-terminal domain	Mtd_N
structural_annotation	UHGV-0086318_43	PF20942,TIGR03503,COG2372	N/A	N/A	N/A	N/A
PHROG	UHGV-0086318_45	phrog_12105	72.1	7.8e-21	N/A	unknown function
eggNOG-mapper	UHGV-0086318_45	1226322.HMPREF1545_03850	50.1	0.00000502	N/A	N/A
PHROG	UHGV-0086318_46	phrog_511	238.5	0	internal virion protein	head and packaging
UniRef90	UHGV-0086318_46	UniRef90_A0A8D9UH72	270.0	0	Stabilization protein (Fragment)	N/A
eggNOG-mapper	UHGV-0086318_46	1226322.HMPREF1545_00785	273.0	0	N/A	N/A
structural_annotation	UHGV-0086318_46	PF11134,TIGR03300,NF038126,COG1520	N/A	N/A	N/A	N/A
PHROG	UHGV-0086318_47	phrog_25888	49.2	0.00000000000008	N/A	unknown function
KOfam	UHGV-0086318_48	K19721	57.0	8.9e-17	COL5AS; collagen type V/XI/XXIV/XXVII, alpha	N/A
PHROG	UHGV-0086318_48	phrog_819	83.1	2.8e-24	tail protein	tail
eggNOG-mapper	UHGV-0086318_48	33035.JPJF01000093_gene2235	71.6	0.00000000000458	Collagen triple helix repeat (20 copies)	N/A
Pfam	UHGV-0086318_48	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
COG	UHGV-0086318_48	COG3064	N/A	N/A	Membrane protein TolA involved in colicin uptake	N/A
PHROG	UHGV-0086318_49	phrog_24267	83.5	1.3e-24	N/A	unknown function
UniRef90	UHGV-0086318_49	UniRef90_R5LPM8	90.5	6.61e-21	Putative truncated prophage LambdaSa1 minor structural protein	N/A
eggNOG-mapper	UHGV-0086318_49	1123302.KB904167_gene530	92.4	4.22e-20	the current gene model (or a revised gene model) may contain a frame shift	N/A
COG	UHGV-0086318_49	COG4675	N/A	N/A	Phage tail collar domain	N/A
structural_annotation	UHGV-0086318_49	COG4675	N/A	N/A	N/A	N/A