UHGV-0086888 (vOTU-042068)

Viral Genome: UHGV-0086888

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0086888
vOTU ID	vOTU-042068
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_184778
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	67.18 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.978
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	27.22
Jumbo phage	No

Genome content
Genome length (bp)	23,171
GC content	40.41%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	37
CDS density	92%
Average CDS length (bps)	579.08
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 67.18)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0086888_1	phrog_36	48.6	0.00000000000016	transcriptional regulator	transcription regulation
Pfam	UHGV-0086888_1	PF07374	N/A	N/A	N/A	DUF1492
KOfam	UHGV-0086888_3	K17398	148.2	5.46506e-44	DNMT3A; DNA (cytosine-5)-methyltransferase 3A [EC:2.1.1.37]	N/A
PHROG	UHGV-0086888_3	phrog_116	154.1	0	DNA methyltransferase	other
UniRef90	UHGV-0086888_3	UniRef90_A0A1C6IZJ2	340.0	0	DNA (cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-0086888_3	1384065.JAGS01000001_gene3108	334.0	0	C-5 cytosine-specific DNA methylase	N/A
PADLOC	UHGV-0086888_3	MTase_II_00058	107.7	1.7e-33	Type II methyltransferase	RM
Pfam	UHGV-0086888_3	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
NCBIFam	UHGV-0086888_3	TIGR00675.1	N/A	N/A	DNA (cytosine-5-)-methyltransferase	N/A
COG	UHGV-0086888_3	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0086888_3	PF00145,TIGR00675,COG0270	N/A	N/A	N/A	N/A
PHROG	UHGV-0086888_4	phrog_2245	75.5	8.6e-22	nucleoside triphosphate pyrophosphohydrolase	other
UniRef90	UHGV-0086888_4	UniRef90_N9WF59	60.1	0.00000000156	MazG domain-containing protein	N/A
eggNOG-mapper	UHGV-0086888_4	658655.HMPREF0988_00885	53.5	0.0000000939	N/A	N/A
KOfam	UHGV-0086888_6	K00571	123.0	3.4e-36	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-0086888_6	phrog_67	99.3	1.9e-30	DNA methyltransferase	other
UniRef90	UHGV-0086888_6	UniRef90_A0A3A6E967	414.0	0	Methyltransferase	N/A
eggNOG-mapper	UHGV-0086888_6	749222.Nitsa_1817	382.0	0	Belongs to the N(4) N(6)-methyltransferase family	N/A
PADLOC	UHGV-0086888_6	MTase_II_00157	77.8	2.5e-31	Type II methyltransferase	RM
Pfam	UHGV-0086888_6	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-0086888_6	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-0086888_6	PF01555,MF_01872,NF010253,COG0863	N/A	N/A	N/A	N/A
PHROG	UHGV-0086888_10	phrog_1682	59.2	6.9e-17	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0086888_10	UniRef90_UPI0009340409	85.5	7.49e-19	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0086888_10	997350.HMPREF9129_1668	83.6	5.47e-19	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	N/A
COG	UHGV-0086888_10	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0086888_10	PF19595,NF007305,COG4570	N/A	N/A	N/A	N/A
KOfam	UHGV-0086888_11	K03111	116.2	4.8e-34	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0086888_11	phrog_44	126.9	1.6e-37	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0086888_11	UniRef90_UPI001F420DC7	102.0	7.38e-25	single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0086888_11	1410638.JHXJ01000019_gene481	94.7	1.62e-22	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-0086888_11	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0086888_11	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0086888_11	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0086888_11	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0086888_11	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0086888_13	phrog_428	111.6	2.4e-34	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0086888_13	UniRef90_UPI001BA4B312	108.0	1.19e-25	conserved phage C-terminal domain-containing protein	N/A
eggNOG-mapper	UHGV-0086888_13	676032.FN3523_1026	99.4	1.41e-22	Conserved phage C-terminus (Phg_2220_C)	N/A
Pfam	UHGV-0086888_13	PF09524	N/A	N/A	Conserved phage C-terminus (Phg_2220_C)	Phg_2220_C
NCBIFam	UHGV-0086888_13	TIGR02220.1	N/A	N/A	phage conserved hypothetical protein, C-terminal domain	N/A
COG	UHGV-0086888_13	COG1846	N/A	N/A	DNA-binding transcriptional regulator, MarR family	N/A
structural_annotation	UHGV-0086888_13	PF09524,PF01978,MF_01819,TIGR02220,TIGR01610,COG3355	N/A	N/A	N/A	N/A
KOfam	UHGV-0086888_16	K07729	51.5	0.000000000000023	K07729; putative transcriptional regulator	N/A
PHROG	UHGV-0086888_16	phrog_8	44.2	0.0000000000046	transcriptional regulator	transcription regulation
UniRef90	UHGV-0086888_16	UniRef90_R8I2Q5	54.3	0.0000000254	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0086888_16	1280689.AUJC01000022_gene1981	56.2	0.0000000046	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-0086888_16	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0086888_16	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0086888_16	PF13560,MF_00535,NF007257,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0086888_18	phrog_1863	47.3	0.00000000000025	N/A	unknown function
eggNOG-mapper	UHGV-0086888_18	66692.ABC2817	58.9	0.000000000378	N/A	N/A
KOfam	UHGV-0086888_19	K07273	82.8	5.4e-24	acm; lysozyme	N/A
PHROG	UHGV-0086888_19	phrog_291	73.1	5e-21	endolysin	lysis
Pfam	UHGV-0086888_19	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-0086888_19	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
NCBIFam	UHGV-0086888_20	TIGR01669.1	N/A	N/A	XkdX family protein	N/A
PHROG	UHGV-0086888_23	phrog_5811	70.2	2.2e-20	N/A	unknown function
eggNOG-mapper	UHGV-0086888_23	665956.HMPREF1032_00105	119.0	2.19e-30	N/A	N/A
PHROG	UHGV-0086888_24	phrog_7064	53.2	6.7e-22	tail protein	tail
eggNOG-mapper	UHGV-0086888_24	1235793.C809_04316	73.9	0.00000000000843	N/A	N/A
structural_annotation	UHGV-0086888_24	PF14594,TIGR03361,COG4379	N/A	N/A	N/A	N/A
PHROG	UHGV-0086888_25	phrog_20385	61.8	7.4e-18	minor tail protein	tail
UniRef90	UHGV-0086888_25	UniRef90_UPI001C013719	122.0	1.06e-29	phage baseplate protein	N/A
eggNOG-mapper	UHGV-0086888_25	411471.SUBVAR_05861	197.0	0	N/A	N/A
structural_annotation	UHGV-0086888_25	PF16774,PF20753,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0086888_26	phrog_58	78.3	7.8e-36	tail length tape measure protein	tail
UniRef90	UHGV-0086888_26	UniRef90_A0A6N8HZ99	99.8	5.99e-18	Phage-related minor tail protein	N/A
eggNOG-mapper	UHGV-0086888_26	1160721.RBI_II00528	217.0	0	Phage tail tape measure protein, TP901 family	N/A
COG	UHGV-0086888_26	COG1006	N/A	N/A	Multisubunit Na+/H+ antiporter, MnhC subunit	N/A
structural_annotation	UHGV-0086888_26	COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-0086888_28	phrog_88	87.7	1.6e-25	major tail protein	tail
UniRef90	UHGV-0086888_28	UniRef90_A0A1C6CIL7	125.0	1.13e-31	Phage major tail protein, phi13 family	N/A
eggNOG-mapper	UHGV-0086888_28	1195236.CTER_5106	82.4	6.11e-17	phage major tail protein, phi13 family	N/A
NCBIFam	UHGV-0086888_28	TIGR01603.1	N/A	N/A	major tail protein	N/A
COG	UHGV-0086888_28	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0086888_28	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-0086888_29	phrog_5	47.3	0.00000000000048	tail completion or Neck1 protein	connector
UniRef90	UHGV-0086888_29	UniRef90_R6UNR2	112.0	1.29e-28	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0086888_29	908340.HMPREF9406_2573	112.0	2.16e-29	N/A	N/A
structural_annotation	UHGV-0086888_29	TIGR01725	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0086888_30	1232446.BAIE02000002_gene829	99.0	2.14e-25	N/A	N/A
structural_annotation	UHGV-0086888_30	PF05657	N/A	N/A	N/A	N/A
PHROG	UHGV-0086888_31	phrog_19734	93.5	2.3e-27	N/A	unknown function
eggNOG-mapper	UHGV-0086888_31	999413.HMPREF1094_02006	72.0	0.00000000000000966	N/A	N/A
structural_annotation	UHGV-0086888_31	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0086888_32	phrog_2550	69.2	4.1e-20	N/A	unknown function
UniRef90	UHGV-0086888_32	UniRef90_UPI001E35E63D	86.3	3.24e-20	phage head-tail connector protein	N/A
eggNOG-mapper	UHGV-0086888_32	33035.JPJF01000039_gene274	85.9	9.34e-21	N/A	N/A
NCBIFam	UHGV-0086888_32	TIGR01560.2	N/A	N/A	head-tail connector protein	N/A
structural_annotation	UHGV-0086888_32	PF05135,TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-0086888_33	phrog_10	175.1	0	major head protein	head and packaging
UniRef90	UHGV-0086888_33	UniRef90_UPI001E346EE7	425.0	0	phage major capsid protein	N/A
eggNOG-mapper	UHGV-0086888_33	1033744.CAEL01000029_gene1282	354.0	0	phage major capsid protein, HK97 family	N/A
Pfam	UHGV-0086888_33	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0086888_33	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0086888_33	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0086888_33	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-0086888_34	K06904	140.9	1.29998e-41	N/A	N/A
PHROG	UHGV-0086888_34	phrog_80	167.1	0	head maturation protease	head and packaging
UniRef90	UHGV-0086888_34	UniRef90_UPI001E3BF12F	204.0	0	HK97 family phage prohead protease	N/A
eggNOG-mapper	UHGV-0086888_34	33035.JPJF01000039_gene272	202.0	0	Caudovirus prohead serine protease	N/A
Pfam	UHGV-0086888_34	PF04586	N/A	N/A	Caudovirus prohead serine protease	Peptidase_S78
NCBIFam	UHGV-0086888_34	TIGR01543.1	N/A	N/A	HK97 family phage prohead protease	N/A
COG	UHGV-0086888_34	COG3740	N/A	N/A	Phage head maturation protease	N/A
structural_annotation	UHGV-0086888_34	PF04586,TIGR01543,COG3740	N/A	N/A	N/A	N/A
PHROG	UHGV-0086888_35	phrog_12	199.4	0	portal protein	head and packaging
UniRef90	UHGV-0086888_35	UniRef90_UPI001896E01B	453.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0086888_35	1235798.C817_04583	400.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-0086888_35	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0086888_35	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0086888_35	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0086888_35	PF04860,MF_04120,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-0086888_36	phrog_9	295.0	0	terminase large subunit	head and packaging
UniRef90	UHGV-0086888_36	UniRef90_R5VJG5	869.0	0	Phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0086888_36	491915.Aflv_0661	786.0	0	Phage Terminase	N/A
Pfam	UHGV-0086888_36	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0086888_36	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0086888_36	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0086888_36	PF20441,PF03354,MF_04013,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0086888_37	phrog_361	69.7	4.9e-20	terminase small subunit	head and packaging
UniRef90	UHGV-0086888_37	UniRef90_UPI000307376F	86.3	1.05e-19	P27 family phage terminase small subunit	N/A
eggNOG-mapper	UHGV-0086888_37	1033744.CAEL01000029_gene1286	77.4	5.85e-17	Phage terminase, small subunit	N/A
Pfam	UHGV-0086888_37	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4