UHGV-0087181 (vOTU-061430)

Viral Genome: UHGV-0087181

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0087181
vOTU ID	vOTU-061430
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_170517
Associated BioSample	SAMEA3136673
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	93.22 (High-quality)
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	2
Recoded stop codon	No

Viral Content
geNomad score	0.9827
Virus hallmark genes (geNomad)	14
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	39.86
Jumbo phage	No

Genome content
Genome length (bp)	37,240
GC content	44.23%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	51
CDS density	96%
Average CDS length (bps)	701.94
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 93.22)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0087181_1	K18889	625.2	0	mdlA, smdA; ATP-binding cassette, subfamily B, multidrug efflux pump	N/A
PHROG	UHGV-0087181_1	phrog_2392	594.0	0	ABC transporter	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0087181_1	UniRef90_A0A174HC79	1050.0	0	ABC transporter ATP-binding protein	N/A
eggNOG-mapper	UHGV-0087181_1	411459.RUMOBE_02520	1049.0	0	N/A	N/A
Pfam	UHGV-0087181_1	PF00664	N/A	N/A	ABC transporter transmembrane region	ABC_membrane
Pfam	UHGV-0087181_1	PF00005	N/A	N/A	ABC transporter	ABC_tran
COG	UHGV-0087181_1	COG1132	N/A	N/A	ABC-type multidrug transport system, ATPase and permease component	N/A
structural_annotation	UHGV-0087181_1	PF00664,PF00005,MF_01005,TIGR02204,COG1132	N/A	N/A	N/A	N/A
PHROG	UHGV-0087181_2	phrog_33061	61.6	3.5e-23	N/A	unknown function
eggNOG-mapper	UHGV-0087181_2	411459.RUMOBE_01712	212.0	0	N/A	N/A
structural_annotation	UHGV-0087181_2	PF19087,NF033202	N/A	N/A	N/A	N/A
KOfam	UHGV-0087181_3	K02395	81.5	6.5e-24	flgJ; peptidoglycan hydrolase FlgJ	N/A
PHROG	UHGV-0087181_3	phrog_5182	142.6	4.60046e-42	endolysin	lysis
UniRef90	UHGV-0087181_3	UniRef90_A0A412EME0	789.0	0	Peptidoglycan-binding protein	N/A
eggNOG-mapper	UHGV-0087181_3	411459.RUMOBE_01713	527.0	0	COG COG3757 Lyzozyme M1 (1,4-beta-N-acetylmuramidase)	N/A
Pfam	UHGV-0087181_3	PF01832	N/A	N/A	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	Glucosaminidase
Pfam	UHGV-0087181_3	PF05257	N/A	N/A	CHAP domain	CHAP
Pfam	UHGV-0087181_3	PF08230	N/A	N/A	CW_7 repeat	CW_7
COG	UHGV-0087181_3	COG1388	N/A	N/A	LysM repeat	N/A
structural_annotation	UHGV-0087181_3	PF08230,PF01832,PF10030,NF038016,TIGR02594,COG1705,COG4322	N/A	N/A	N/A	N/A
PHROG	UHGV-0087181_4	phrog_199	84.1	1.5e-24	holin	lysis
UniRef90	UHGV-0087181_4	UniRef90_A0A174MES9	235.0	0	Phage-related holin (Lysis protein)	N/A
eggNOG-mapper	UHGV-0087181_4	411459.RUMOBE_01714	235.0	0	Bacteriophage holin family	N/A
Pfam	UHGV-0087181_4	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-0087181_4	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-0087181_4	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-0087181_4	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0087181_6	1410650.JHWL01000003_gene2818	67.4	0.0000000000000373	N/A	N/A
PHROG	UHGV-0087181_8	phrog_1423	106.9	1.2e-31	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0087181_8	UniRef90_A0A3D2D981	294.0	0	Reverse transcriptase domain-containing protein	N/A
eggNOG-mapper	UHGV-0087181_8	411459.RUMOBE_01719	441.0	0	reverse transcriptase	N/A
COG	UHGV-0087181_8	COG3344	N/A	N/A	Retron-type reverse transcriptase	N/A
PHROG	UHGV-0087181_9	phrog_17147	416.3	0	N/A	unknown function
eggNOG-mapper	UHGV-0087181_9	411459.RUMOBE_01720	924.0	0	N/A	N/A
PHROG	UHGV-0087181_10	phrog_16573	133.8	8.9e-40	N/A	unknown function
eggNOG-mapper	UHGV-0087181_10	411459.RUMOBE_01721	176.0	0	N/A	N/A
Pfam	UHGV-0087181_10	PF10651	N/A	N/A	BppU N-terminal domain	BppU_N
structural_annotation	UHGV-0087181_10	PF10651,NF010435	N/A	N/A	N/A	N/A
PHROG	UHGV-0087181_11	phrog_11105	40.6	0.000000000035	N/A	unknown function
PHROG	UHGV-0087181_12	phrog_18110	480.7	0	N/A	unknown function
UniRef90	UHGV-0087181_12	UniRef90_A0A417CS53	146.0	6.72e-33	Peptidase S74 domain-containing protein	N/A
eggNOG-mapper	UHGV-0087181_12	411459.RUMOBE_01723	421.0	0	Phage minor structural protein	N/A
Pfam	UHGV-0087181_12	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
Pfam	UHGV-0087181_12	PF13884	N/A	N/A	Chaperone of endosialidase	Peptidase_S74
NCBIFam	UHGV-0087181_12	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0087181_12	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0087181_12	PF14594,PF13884,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0087181_13	phrog_33	76.8	5.1e-22	distal tail protein Dit	tail
UniRef90	UHGV-0087181_13	UniRef90_A0A174MA27	283.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0087181_13	411459.RUMOBE_01724	284.0	0	phage tail	N/A
Pfam	UHGV-0087181_13	PF20753	N/A	N/A	Phage tail C-terminal domain	DUF6558_C
COG	UHGV-0087181_13	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0087181_13	PF20753,PF19266,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0087181_14	phrog_1272	679.8	0	tail length tape measure protein	tail
UniRef90	UHGV-0087181_14	UniRef90_A5ZRU7	842.0	0	Phage tail tape measure protein, TP901 family	N/A
eggNOG-mapper	UHGV-0087181_14	411459.RUMOBE_01725	842.0	0	Phage tail tape measure protein, TP901 family	N/A
Pfam	UHGV-0087181_14	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-0087181_14	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-0087181_14	COG5283	N/A	N/A	Phage-related tail protein	N/A
PHROG	UHGV-0087181_15	phrog_25901	273.7	0	N/A	unknown function
eggNOG-mapper	UHGV-0087181_15	411459.RUMOBE_01726	277.0	0	N/A	N/A
structural_annotation	UHGV-0087181_15	PF10109	N/A	N/A	N/A	N/A
PHROG	UHGV-0087181_16	phrog_13494	142.5	8.89825e-43	N/A	unknown function
eggNOG-mapper	UHGV-0087181_16	411459.RUMOBE_01727	187.0	0	N/A	N/A
PHROG	UHGV-0087181_17	phrog_88	144.4	5.99756e-43	major tail protein	tail
UniRef90	UHGV-0087181_17	UniRef90_A0A174MD18	326.0	0	Phage major tail protein, phi13 family	N/A
eggNOG-mapper	UHGV-0087181_17	411459.RUMOBE_01728	326.0	0	phage major tail protein, phi13 family	N/A
Pfam	UHGV-0087181_17	PF04630	N/A	N/A	Phage tail tube protein	Phage_TTP_1
NCBIFam	UHGV-0087181_17	TIGR01603.1	N/A	N/A	major tail protein	N/A
COG	UHGV-0087181_17	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0087181_17	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-0087181_18	phrog_78	52.1	0.000000000000014	tail terminator	connector
eggNOG-mapper	UHGV-0087181_18	411468.CLOSCI_01495	105.0	9.76e-28	N/A	N/A
structural_annotation	UHGV-0087181_18	PF05657,NF040576,COG3167	N/A	N/A	N/A	N/A
PHROG	UHGV-0087181_19	phrog_5	65.7	1.2e-18	tail completion or Neck1 protein	connector
UniRef90	UHGV-0087181_19	UniRef90_A0A174MCG9	237.0	0	Phage protein, HK97 gp10 family	N/A
eggNOG-mapper	UHGV-0087181_19	411459.RUMOBE_01730	237.0	0	Phage protein, HK97 gp10 family	N/A
NCBIFam	UHGV-0087181_19	TIGR01725.1	N/A	N/A	HK97-gp10 family putative phage morphogenesis protein	N/A
structural_annotation	UHGV-0087181_19	PF04883,TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-0087181_20	phrog_25	44.9	0.000000000002	head closure Hc1	connector
UniRef90	UHGV-0087181_20	UniRef90_A0A174MCN9	157.0	0	Bacteriophage head-tail adaptor	N/A
eggNOG-mapper	UHGV-0087181_20	411459.RUMOBE_01731	157.0	0	Phage head-tail adaptor	N/A
Pfam	UHGV-0087181_20	PF05521	N/A	N/A	Phage head-tail joining protein	Phage_H_T_join
NCBIFam	UHGV-0087181_20	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
structural_annotation	UHGV-0087181_20	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
UniRef90	UHGV-0087181_21	UniRef90_A0A3R6UCP2	88.2	5.78e-21	Phage gp6-like head-tail connector protein	N/A
eggNOG-mapper	UHGV-0087181_21	411459.RUMOBE_01732	160.0	0	N/A	N/A
NCBIFam	UHGV-0087181_21	TIGR01560.2	N/A	N/A	head-tail connector protein	N/A
PHROG	UHGV-0087181_22	phrog_10	235.9	0	major head protein	head and packaging
UniRef90	UHGV-0087181_22	UniRef90_A0A174MCH2	666.0	0	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
eggNOG-mapper	UHGV-0087181_22	411459.RUMOBE_01733	672.0	0	phage phi-C31 gp36 major capsid-like protein	N/A
Pfam	UHGV-0087181_22	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0087181_22	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0087181_22	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0087181_22	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-0087181_23	K01358	130.3	2e-38	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0087181_23	phrog_94	208.6	0	head maturation protease	head and packaging
UniRef90	UHGV-0087181_23	UniRef90_A0A174M8P6	426.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-0087181_23	411459.RUMOBE_01734	426.0	0	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-0087181_23	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0087181_23	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-0087181_23	PF00574,MF_00444,NF011090,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-0087181_24	phrog_12	293.8	0	portal protein	head and packaging
UniRef90	UHGV-0087181_24	UniRef90_A5ZRV7	768.0	0	Phage portal protein, HK97 family	N/A
eggNOG-mapper	UHGV-0087181_24	411459.RUMOBE_01735	768.0	0	N/A	N/A
Pfam	UHGV-0087181_24	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0087181_24	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0087181_24	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0087181_24	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-0087181_25	phrog_9	389.6	0	terminase large subunit	head and packaging
UniRef90	UHGV-0087181_25	UniRef90_A5ZRV9	1071.0	0	Putative phage terminase, large subunit	N/A
eggNOG-mapper	UHGV-0087181_25	411459.RUMOBE_01737	1071.0	0	N/A	N/A
Pfam	UHGV-0087181_25	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0087181_25	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0087181_25	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0087181_25	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0087181_26	phrog_83	117.6	9.5e-35	terminase small subunit	head and packaging
UniRef90	UHGV-0087181_26	UniRef90_A5ZRW0	278.0	0	Phage terminase, small subunit, P27 family	N/A
eggNOG-mapper	UHGV-0087181_26	411459.RUMOBE_01738	278.0	0	phage terminase, small subunit	N/A
Pfam	UHGV-0087181_26	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
NCBIFam	UHGV-0087181_26	TIGR01558.1	N/A	N/A	phage terminase small subunit P27 family	N/A
COG	UHGV-0087181_26	COG3747	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-0087181_26	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-0087181_27	phrog_144	79.7	4e-23	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0087181_27	UniRef90_A0A3R7BR43	192.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0087181_27	411459.RUMOBE_01739	200.0	0	N/A	N/A
PHROG	UHGV-0087181_28	phrog_1558	151.2	4.2039e-45	N/A	unknown function
UniRef90	UHGV-0087181_28	UniRef90_I2E8Y5	103.0	3.76e-25	Gp40	N/A
eggNOG-mapper	UHGV-0087181_28	411459.RUMOBE_01740	243.0	0	N/A	N/A
structural_annotation	UHGV-0087181_28	PF08281,MF_00674,TIGR01636,COG2739	N/A	N/A	N/A	N/A
KOfam	UHGV-0087181_30	K03111	132.2	6.5e-39	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0087181_30	phrog_44	132.5	3.3e-39	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0087181_30	UniRef90_A0A173R0S1	176.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0087181_30	1235798.C817_04744	164.0	0	Single-strand binding protein family	N/A
Pfam	UHGV-0087181_30	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0087181_30	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0087181_30	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0087181_30	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0087181_30	PF00436,MF_00984,NF005580,COG0629	N/A	N/A	N/A	N/A
KOfam	UHGV-0087181_33	K03497	53.7	3e-16	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	N/A
PHROG	UHGV-0087181_33	phrog_15982	583.7	0	N/A	unknown function
UniRef90	UHGV-0087181_33	UniRef90_A5ZRX0	471.0	0	ParB domain-containing protein	N/A
eggNOG-mapper	UHGV-0087181_33	411459.RUMOBE_01748	471.0	0	ParB-like nuclease domain	N/A
Pfam	UHGV-0087181_33	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
Pfam	UHGV-0087181_33	PF12961	N/A	N/A	N/A	DUF3850
COG	UHGV-0087181_33	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-0087181_33	PF12961,PF02195,MF_02015,MF_00684,TIGR04285,NF003443,COG1475,COG3097	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0087181_34	411459.RUMOBE_01749	54.7	0.000000145	N/A	N/A
KOfam	UHGV-0087181_35	K03496	175.7	0	parA, soj; chromosome partitioning protein	N/A
PHROG	UHGV-0087181_35	phrog_164	159.6	0	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0087181_35	UniRef90_A0A412EMG9	389.0	0	ParA family protein	N/A
eggNOG-mapper	UHGV-0087181_35	411459.RUMOBE_01750	386.0	0	CobQ CobB MinD ParA nucleotide binding domain protein	N/A
Pfam	UHGV-0087181_35	PF13614	N/A	N/A	AAA domain	AAA_31
COG	UHGV-0087181_35	COG1192	N/A	N/A	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	N/A
structural_annotation	UHGV-0087181_35	PF13614,MF_00533,NF010443,COG1192	N/A	N/A	N/A	N/A
PHROG	UHGV-0087181_37	phrog_824	150.9	2.8026e-45	N/A	unknown function
UniRef90	UHGV-0087181_37	UniRef90_A5ZRX5	258.0	0	VRR-NUC domain protein	N/A
eggNOG-mapper	UHGV-0087181_37	411459.RUMOBE_01753	258.0	0	VRR-NUC domain	N/A
Pfam	UHGV-0087181_37	PF08774	N/A	N/A	VRR-NUC domain	VRR_NUC
PHROG	UHGV-0087181_38	phrog_3584	291.3	0	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0087181_38	UniRef90_A0A4P8IFK4	245.0	0	N/A	N/A
eggNOG-mapper	UHGV-0087181_38	411459.RUMOBE_01756	468.0	0	COG NOG14934 non supervised orthologous group	N/A
structural_annotation	UHGV-0087181_38	PF21578	N/A	N/A	N/A	N/A
PHROG	UHGV-0087181_40	phrog_31560	344.0	0	N/A	unknown function
eggNOG-mapper	UHGV-0087181_40	585501.HMPREF6123_0413	53.9	0.00000149	N/A	N/A
KOfam	UHGV-0087181_41	K22300	47.5	0.00000000000036	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0087181_41	phrog_8	49.9	0.000000000000076	transcriptional regulator	transcription regulation
UniRef90	UHGV-0087181_41	UniRef90_A0A414EGC7	79.3	9.7e-18	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0087181_41	883081.HMPREF9698_00677	52.4	0.000000401	sequence-specific DNA binding	N/A
Pfam	UHGV-0087181_41	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0087181_41	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0087181_43	NF010188	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0087181_44	411470.RUMGNA_00195	57.4	0.0000000711	N/A	N/A
PHROG	UHGV-0087181_46	phrog_34107	154.8	0	N/A	unknown function
eggNOG-mapper	UHGV-0087181_46	411459.RUMOBE_01761	149.0	1.4013e-45	N/A	N/A
KOfam	UHGV-0087181_50	K22300	46.5	0.00000000000086	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
UniRef90	UHGV-0087181_50	UniRef90_A0A417ANN6	209.0	0	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0087181_50	742740.HMPREF9474_04328	125.0	4.88e-35	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0087181_50	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0087181_50	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0087181_50	PF12844,MF_00535,NF007257,COG1396	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0087181_51	1235800.C819_02268	144.0	7.51001e-40	N/A	N/A