UHGV-0087565 (vOTU-084549)

Viral Genome: UHGV-0087565

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0087565
vOTU ID	vOTU-084549
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_172437
Associated BioSample	SAMEA3136699
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.22 (High-quality)
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.978
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	36.91
Jumbo phage	No

Genome content
Genome length (bp)	40,750
GC content	42.31%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	50
CDS density	94%
Average CDS length (bps)	764.70
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 99.22)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0087565_1	K00652	450.5	0	bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47]	N/A
UniRef90	UHGV-0087565_1	UniRef90_R6DVQ2	679.0	0	2-amino-3-ketobutyrate coenzyme A ligase	N/A
eggNOG-mapper	UHGV-0087565_1	1410622.JNKY01000014_gene211	528.0	0	Catalyzes the cleavage of 2-amino-3-ketobutyrate to glycine and acetyl-CoA	N/A
Pfam	UHGV-0087565_1	PF00155	N/A	N/A	Aminotransferase class I and II	Aminotran_1_2
COG	UHGV-0087565_1	COG0156	N/A	N/A	7-keto-8-aminopelargonate synthetase or related enzyme	N/A
structural_annotation	UHGV-0087565_1	PF00464,MF_00051,NF000586,COG0112	N/A	N/A	N/A	N/A
PHROG	UHGV-0087565_2	phrog_27136	155.7	0	N/A	unknown function
UniRef90	UHGV-0087565_2	UniRef90_A0A413B176	316.0	0	Zinc ribbon domain-containing protein	N/A
eggNOG-mapper	UHGV-0087565_2	1282664.H354_06486	145.0	1.48005e-41	Short C-terminal domain	N/A
PHROG	UHGV-0087565_3	phrog_87	96.7	1.5e-28	metallo-protease	other
UniRef90	UHGV-0087565_3	UniRef90_A0A413B155	281.0	0	ImmA/IrrE family metallo-endopeptidase	N/A
eggNOG-mapper	UHGV-0087565_3	411459.RUMOBE_00962	174.0	0	Zn peptidase	N/A
Pfam	UHGV-0087565_3	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
COG	UHGV-0087565_3	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-0087565_3	PF06114,COG2856	N/A	N/A	N/A	N/A
PHROG	UHGV-0087565_4	phrog_8	65.9	7.8e-19	transcriptional regulator	transcription regulation
UniRef90	UHGV-0087565_4	UniRef90_UPI000E4CDB23	265.0	0	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0087565_4	411459.RUMOBE_00961	164.0	0	Bacteriophage CI repressor helix-turn-helix domain	N/A
Pfam	UHGV-0087565_4	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
COG	UHGV-0087565_4	COG3093	N/A	N/A	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	N/A
structural_annotation	UHGV-0087565_4	PF12844,NF041951,COG1396	N/A	N/A	N/A	N/A
UniRef90	UHGV-0087565_5	UniRef90_UPI000E4D6E81	152.0	0	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0087565_5	665950.HMPREF1025_02561	48.1	0.00000159	sequence-specific DNA binding	N/A
Pfam	UHGV-0087565_5	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0087565_5	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
PHROG	UHGV-0087565_9	phrog_3584	147.4	9.66896e-44	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0087565_9	UniRef90_UPI001D0EB55A	312.0	0	helitron helicase-like domain-containing protein	N/A
eggNOG-mapper	UHGV-0087565_9	483218.BACPEC_01173	157.0	1.68156e-44	N/A	N/A
structural_annotation	UHGV-0087565_9	PF21578,NF041486	N/A	N/A	N/A	N/A
KOfam	UHGV-0087565_10	K03469	63.8	3.8e-18	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	N/A
PHROG	UHGV-0087565_10	phrog_531	55.2	0.0000000000000013	Rnase H	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0087565_10	UniRef90_A0A413B186	268.0	0	RNase H type-1 domain-containing protein	N/A
eggNOG-mapper	UHGV-0087565_10	411459.RUMOBE_00952	98.2	1.51e-24	RNase H	N/A
Pfam	UHGV-0087565_10	PF00075	N/A	N/A	RNase H	RNase_H
COG	UHGV-0087565_10	COG0328	N/A	N/A	Ribonuclease HI	N/A
structural_annotation	UHGV-0087565_10	PF00075,MF_00042,NF001236,COG0328	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0087565_11	411459.RUMOBE_00951	238.0	0	N/A	N/A
PHROG	UHGV-0087565_12	phrog_8470	313.1	0	N/A	unknown function
UniRef90	UHGV-0087565_12	UniRef90_UPI001D086F83	507.0	0	PcfJ domain-containing protein	N/A
eggNOG-mapper	UHGV-0087565_12	1235792.C808_03081	512.0	0	PcfJ-like protein	N/A
Pfam	UHGV-0087565_12	PF14284	N/A	N/A	PcfJ-like protein	PcfJ
structural_annotation	UHGV-0087565_12	PF14284	N/A	N/A	N/A	N/A
PHROG	UHGV-0087565_13	phrog_15077	94.0	1.7e-27	N/A	unknown function
UniRef90	UHGV-0087565_13	UniRef90_A5ZPN2	295.0	0	N/A	N/A
eggNOG-mapper	UHGV-0087565_13	411459.RUMOBE_00949	295.0	0	N/A	N/A
COG	UHGV-0087565_13	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-0087565_13	PF11300,NF038070	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0087565_15	1235798.C817_05493	89.7	1.65e-22	N/A	N/A
PHROG	UHGV-0087565_16	phrog_7566	105.2	2.8e-31	N/A	unknown function
eggNOG-mapper	UHGV-0087565_16	693746.OBV_24070	77.4	8.12e-17	N/A	N/A
PHROG	UHGV-0087565_20	phrog_6568	55.9	5.2e-16	N/A	unknown function
PHROG	UHGV-0087565_21	phrog_36	77.5	1.7e-22	transcriptional regulator	transcription regulation
UniRef90	UHGV-0087565_21	UniRef90_A0A413B185	234.0	0	N/A	N/A
eggNOG-mapper	UHGV-0087565_21	97139.C824_05976	114.0	1.93e-30	sigma factor activity	N/A
Pfam	UHGV-0087565_21	PF07374	N/A	N/A	N/A	DUF1492
COG	UHGV-0087565_21	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
structural_annotation	UHGV-0087565_21	PF07374,MF_00674,NF007227,COG1342	N/A	N/A	N/A	N/A
KOfam	UHGV-0087565_23	K07474	125.1	9e-37	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-0087565_23	phrog_2606	350.1	0	terminase small subunit	head and packaging
UniRef90	UHGV-0087565_23	UniRef90_UPI001D08F556	407.0	0	terminase small subunit	N/A
eggNOG-mapper	UHGV-0087565_23	411461.DORFOR_01162	350.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-0087565_23	PF06056	N/A	N/A	Putative ATPase subunit of terminase (gpP-like)	Terminase_5
Pfam	UHGV-0087565_23	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-0087565_23	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0087565_23	PF03592,PF10668,NF040601,COG3728	N/A	N/A	N/A	N/A
KOfam	UHGV-0087565_24	K06909	216.2	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0087565_24	phrog_2	114.8	1.3e-33	terminase large subunit	head and packaging
UniRef90	UHGV-0087565_24	UniRef90_UPI0018985A97	864.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0087565_24	411461.DORFOR_00750	735.0	0	COG COG1783 Phage terminase large subunit	N/A
Pfam	UHGV-0087565_24	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-0087565_24	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-0087565_24	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0087565_24	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0087565_24	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0087565_25	phrog_533	399.4	0	portal protein	head and packaging
UniRef90	UHGV-0087565_25	UniRef90_UPI001C0FB394	852.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0087565_25	411461.DORFOR_00749	635.0	0	COG NOG25118 non supervised orthologous group	N/A
Pfam	UHGV-0087565_25	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0087565_25	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0087565_26	phrog_581	310.4	0	minor head protein	head and packaging
UniRef90	UHGV-0087565_26	UniRef90_A0A413B1A6	675.0	0	Minor capsid protein	N/A
eggNOG-mapper	UHGV-0087565_26	658655.HMPREF0988_02563	340.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-0087565_26	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0087565_26	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0087565_26	PF06152	N/A	N/A	N/A	N/A
KOfam	UHGV-0087565_27	K07584	64.4	2.4e-18	N/A	N/A
PHROG	UHGV-0087565_27	phrog_4478	87.1	1.3e-25	peptidase	other
UniRef90	UHGV-0087565_27	UniRef90_UPI00156D7F8B	161.0	0	ribosomal-processing cysteine protease Prp	N/A
eggNOG-mapper	UHGV-0087565_27	411461.DORFOR_00746	124.0	8.53e-36	Pfam:Peptidase_C108	N/A
Pfam	UHGV-0087565_27	PF04327	N/A	N/A	Cysteine protease Prp	Peptidase_Prp
COG	UHGV-0087565_27	COG2868	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0087565_27	PF04327,NF011124,COG2868	N/A	N/A	N/A	N/A
PHROG	UHGV-0087565_28	phrog_2303	109.8	3e-32	head scaffolding protein	head and packaging
eggNOG-mapper	UHGV-0087565_28	411461.DORFOR_00745	171.0	0	N/A	N/A
AcrCatalog	UHGV-0087565_28	cluster_74817	84.7	9.35e-23	NA	N/A
structural_annotation	UHGV-0087565_28	PF10788,MF_02110	N/A	N/A	N/A	N/A
PHROG	UHGV-0087565_29	phrog_10	179.0	0	major head protein	head and packaging
UniRef90	UHGV-0087565_29	UniRef90_A0A396PT94	566.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0087565_29	411461.DORFOR_00744	540.0	0	COG NOG20168 non supervised orthologous group	N/A
Pfam	UHGV-0087565_29	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0087565_29	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0087565_29	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0087565_29	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0087565_30	phrog_541	84.7	9.4e-25	head-tail adaptor	connector
UniRef90	UHGV-0087565_30	UniRef90_A0A371AQT0	77.4	9.21e-16	N/A	N/A
eggNOG-mapper	UHGV-0087565_30	1304866.K413DRAFT_3039	70.9	0.0000000000000604	N/A	N/A
PHROG	UHGV-0087565_31	phrog_3366	69.0	3.3e-20	N/A	unknown function
Pfam	UHGV-0087565_31	PF20536	N/A	N/A	N/A	DUF6751
structural_annotation	UHGV-0087565_31	PF20536	N/A	N/A	N/A	N/A
PHROG	UHGV-0087565_32	phrog_556	71.7	9.1e-21	minor head protein	head and packaging
UniRef90	UHGV-0087565_32	UniRef90_UPI00156EFCF3	234.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-0087565_32	1449050.JNLE01000003_gene3886	83.6	1.61e-18	N/A	N/A
Pfam	UHGV-0087565_32	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-0087565_32	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-0087565_33	phrog_3266	114.9	4.7e-34	tail completion	connector
eggNOG-mapper	UHGV-0087565_33	658655.HMPREF0988_02556	54.3	0.000000267	N/A	N/A
structural_annotation	UHGV-0087565_33	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-0087565_34	phrog_3099	123.5	1.4e-36	N/A	unknown function
eggNOG-mapper	UHGV-0087565_34	1304866.K413DRAFT_3043	162.0	0	N/A	N/A
structural_annotation	UHGV-0087565_34	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0087565_35	phrog_11299	69.6	5e-20	N/A	unknown function
structural_annotation	UHGV-0087565_35	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-0087565_36	phrog_706	133.4	1.3e-39	N/A	unknown function
UniRef90	UHGV-0087565_36	UniRef90_UPI001BAD00AD	198.0	0	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-0087565_36	411459.RUMOBE_01383	289.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0087565_36	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0087565_36	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0087565_37	phrog_1535	327.6	0	tail length tape measure protein	tail
UniRef90	UHGV-0087565_37	UniRef90_A0A173R880	597.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0087565_37	476272.RUMHYD_01785	639.0	0	phage tail tape measure protein	N/A
COG	UHGV-0087565_37	COG1511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0087565_37	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-0087565_38	phrog_1194	60.6	2.4e-17	N/A	unknown function
eggNOG-mapper	UHGV-0087565_38	742733.HMPREF9469_01808	98.2	2.3e-24	N/A	N/A
Pfam	UHGV-0087565_38	PF20458	N/A	N/A	N/A	DUF6711
structural_annotation	UHGV-0087565_38	PF20458,TIGR01633,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0087565_39	phrog_18190	98.2	1.4e-32	N/A	unknown function
UniRef90	UHGV-0087565_39	UniRef90_UPI000E4C0A8F	1254.0	0	bacterial Ig-like domain-containing protein	N/A
eggNOG-mapper	UHGV-0087565_39	1121333.JMLH01000015_gene2402	119.0	7.56e-24	Bacterial Ig-like domain (group 3)	N/A
Pfam	UHGV-0087565_39	PF13306	N/A	N/A	BspA type Leucine rich repeat region (6 copies)	LRR_5
Pfam	UHGV-0087565_39	PF07523	N/A	N/A	Bacterial Ig-like domain (group 3)	Big_3
COG	UHGV-0087565_39	COG0683	N/A	N/A	ABC-type branched-chain amino acid transport system, periplasmic component	N/A
structural_annotation	UHGV-0087565_39	PF13306,PF07523,PF05113,NF033848,NF040978,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-0087565_42	phrog_17147	338.8	0	N/A	unknown function
eggNOG-mapper	UHGV-0087565_42	657322.FPR_27150	549.0	0	N/A	N/A
KOfam	UHGV-0087565_43	K00986	78.0	1.2e-22	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	N/A
PHROG	UHGV-0087565_43	phrog_1423	134.5	8.4e-40	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0087565_43	UniRef90_A0A395V130	685.0	0	Reverse transcriptase (RNA-dependent DNA polymerase)	N/A
eggNOG-mapper	UHGV-0087565_43	657322.FPR_27160	379.0	0	Reverse transcriptase (RNA-dependent DNA polymerase)	N/A
Pfam	UHGV-0087565_43	PF00078	N/A	N/A	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
COG	UHGV-0087565_43	COG3344	N/A	N/A	Retron-type reverse transcriptase	N/A
structural_annotation	UHGV-0087565_43	PF00078,MF_04065,TIGR04416,COG3344	N/A	N/A	N/A	N/A
NCBIFam	UHGV-0087565_45	NF040910.1	N/A	N/A	CD1375 family protein	N/A
structural_annotation	UHGV-0087565_45	NF040910	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0087565_46	457412.RSAG_04673	53.1	0.000000011	N/A	N/A
PHROG	UHGV-0087565_47	phrog_4105	91.2	8.5e-27	N/A	unknown function
eggNOG-mapper	UHGV-0087565_47	411459.RUMOBE_00911	191.0	0	N/A	N/A
PHROG	UHGV-0087565_48	phrog_1129	85.7	2.9e-25	holin	lysis
UniRef90	UHGV-0087565_48	UniRef90_UPI00051B7422	147.0	4.34403e-44	phage holin family protein	N/A
eggNOG-mapper	UHGV-0087565_48	1121115.AXVN01000006_gene2171	177.0	0	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-0087565_48	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0087565_48	PF16079	N/A	N/A	N/A	N/A
KOfam	UHGV-0087565_49	K21471	41.6	0.00000000002	cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]	N/A
PHROG	UHGV-0087565_49	phrog_14030	359.1	0	N/A	unknown function
UniRef90	UHGV-0087565_49	UniRef90_C6JAY8	731.0	0	NlpC/P60 domain-containing protein	N/A
eggNOG-mapper	UHGV-0087565_49	411459.RUMOBE_01085	280.0	0	N/A	N/A
Pfam	UHGV-0087565_49	PF00877	N/A	N/A	NlpC/P60 family	NLPC_P60
structural_annotation	UHGV-0087565_49	PF05382,PF19087,NF033741,COG0791	N/A	N/A	N/A	N/A
KOfam	UHGV-0087565_50	K01649	347.3	0	leuA, IMS; 2-isopropylmalate synthase [EC:2.3.3.13]	N/A
UniRef90	UHGV-0087565_50	UniRef90_D4LM70	556.0	0	2-isopropylmalate synthase	N/A
eggNOG-mapper	UHGV-0087565_50	1121115.AXVN01000032_gene376	573.0	0	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)	N/A
Pfam	UHGV-0087565_50	PF00682	N/A	N/A	HMGL-like	HMGL-like
NCBIFam	UHGV-0087565_50	NF002991.1	N/A	N/A	2-isopropylmalate synthase	N/A
COG	UHGV-0087565_50	COG0119	N/A	N/A	Isopropylmalate/homocitrate/citramalate synthases	N/A