UHGV-0088399 (vOTU-017218)

Viral Genome: UHGV-0088399

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0088399
vOTU ID	vOTU-017218
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_177626
Associated BioSample	SAMEA3449190
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	64.14 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	7
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9776
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Uncertain - viral or bacterial
viralVerify score	3.48
Jumbo phage	No

Genome content
Genome length (bp)	25,167
GC content	52.84%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	39
CDS density	98%
Average CDS length (bps)	633.08
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 64.14)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
UniRef90	UHGV-0088399_2	UniRef90_A0A316R8G0	55.5	0.0000000165	HTH cro/C1-type domain-containing protein	N/A
structural_annotation	UHGV-0088399_3	PF21291,TIGR03070,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-0088399_6	phrog_298	66.2	2.2e-19	exonuclease	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0088399_6	1218075.BAYA01000003_gene606	89.0	3.17e-19	N/A	N/A
structural_annotation	UHGV-0088399_6	PF12705,MF_03030,TIGR00372,COG2887	N/A	N/A	N/A	N/A
PHROG	UHGV-0088399_8	phrog_561	150.7	1.4013e-45	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0088399_8	UniRef90_A0A174RC35	210.0	0	RecT family	N/A
eggNOG-mapper	UHGV-0088399_8	1129145.H2BD49_9CAUD	167.0	0	DNA metabolic process	N/A
Pfam	UHGV-0088399_8	PF03837	N/A	N/A	RecT family	RecT
structural_annotation	UHGV-0088399_8	PF03837,TIGR01913,COG3723	N/A	N/A	N/A	N/A
PHROG	UHGV-0088399_10	phrog_9804	123.8	1.3e-36	N/A	unknown function
UniRef90	UHGV-0088399_10	UniRef90_A0A6L5Y152	137.0	5.77e-38	Inhibitor_G39P domain-containing protein	N/A
eggNOG-mapper	UHGV-0088399_10	585394.RHOM_14005	104.0	7.48e-26	Loader and inhibitor of phage G40P	N/A
AcrCatalog	UHGV-0088399_10	cluster_137185	92.4	6.98e-26	NA	N/A
Pfam	UHGV-0088399_10	PF11417	N/A	N/A	Loader and inhibitor of phage G40P	Inhibitor_G39P
structural_annotation	UHGV-0088399_10	PF11417	N/A	N/A	N/A	N/A
KOfam	UHGV-0088399_11	K01520	140.6	1.19993e-41	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	N/A
PHROG	UHGV-0088399_11	phrog_135	123.2	1.4e-36	dUTPase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0088399_11	UniRef90_R5YVN2	175.0	0	Deoxyuridine 5'-triphosphate nucleotidohydrolase	N/A
eggNOG-mapper	UHGV-0088399_11	887929.HMP0721_1278	149.0	9.10844e-44	dUTPase	N/A
Pfam	UHGV-0088399_11	PF00692	N/A	N/A	dUTPase	dUTPase
NCBIFam	UHGV-0088399_11	TIGR00576.1	N/A	N/A	dUTP diphosphatase	N/A
COG	UHGV-0088399_11	COG0756	N/A	N/A	dUTP pyrophosphatase (dUTPase)	N/A
PHROG	UHGV-0088399_20	phrog_1770	99.6	3.5e-29	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0088399_20	UniRef90_A0A1L8CM45	103.0	2.55e-25	Crossover junction endodeoxyribonuclease RuvC	N/A
eggNOG-mapper	UHGV-0088399_20	994601.G9BW80_9CAUD	94.0	2.1e-22	nucleic acid binding	N/A
structural_annotation	UHGV-0088399_20	PF16921,MF_00034,NF000711,COG0817	N/A	N/A	N/A	N/A
PHROG	UHGV-0088399_21	phrog_374	70.6	3.2e-20	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0088399_21	UniRef90_M4W6M2	66.6	0.000000000000933	Transcription factor	N/A
eggNOG-mapper	UHGV-0088399_21	387344.LVIS_0713	73.9	0.0000000000000015	N/A	N/A
PHROG	UHGV-0088399_22	phrog_5931	148.7	3.92364e-44	N/A	unknown function
eggNOG-mapper	UHGV-0088399_22	35760.BCHO_0887	113.0	3.53e-27	N/A	N/A
PHROG	UHGV-0088399_23	phrog_36767	62.5	5.7e-18	N/A	unknown function
eggNOG-mapper	UHGV-0088399_23	649747.HMPREF0083_01019	52.4	0.0000000869	N/A	N/A
Pfam	UHGV-0088399_23	PF10049	N/A	N/A	N/A	DUF2283
structural_annotation	UHGV-0088399_23	PF10049,COG5428	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0088399_24	PF18812,COG2929	N/A	N/A	N/A	N/A
Pfam	UHGV-0088399_25	PF11950	N/A	N/A	N/A	DUF3467
eggNOG-mapper	UHGV-0088399_26	1408437.JNJN01000039_gene389	120.0	6.72e-24	heme binding	N/A
Pfam	UHGV-0088399_26	PF18812	N/A	N/A	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease3	PBECR3
COG	UHGV-0088399_26	COG0739	N/A	N/A	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	N/A
PHROG	UHGV-0088399_28	phrog_20388	91.3	1.1e-26	endolysin	lysis
UniRef90	UHGV-0088399_28	UniRef90_UPI0018CC5E5E	98.6	7.32e-21	phage tail tip lysozyme	N/A
eggNOG-mapper	UHGV-0088399_28	1203606.HMPREF1526_00253	101.0	7.74e-22	N-acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-0088399_28	PF18013	N/A	N/A	Phage tail lysozyme	Phage_lysozyme2
Pfam	UHGV-0088399_28	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-0088399_28	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0088399_28	PF18013,PF01471,COG3409	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0088399_32	PF21253,PF07210,NF038128,TIGR03000,COG2512	N/A	N/A	N/A	N/A
PHROG	UHGV-0088399_33	phrog_892	60.1	3.8e-28	tail fiber protein	tail
eggNOG-mapper	UHGV-0088399_33	1408422.JHYF01000026_gene3527	86.3	8.17e-18	nuclear chromosome segregation	N/A
COG	UHGV-0088399_33	COG5301	N/A	N/A	Phage-related tail fiber protein	N/A
UniRef90	UHGV-0088399_34	UniRef90_A0A4D7ASB8	504.0	0	N/A	N/A
eggNOG-mapper	UHGV-0088399_34	1519439.JPJG01000011_gene54	516.0	0	N/A	N/A
structural_annotation	UHGV-0088399_34	PF11134,MF_03027,NF010237,TIGR03511,COG2319	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0088399_35	PF16677	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0088399_36	1519439.JPJG01000011_gene57	130.0	9.66e-37	N/A	N/A
structural_annotation	UHGV-0088399_36	PF11650	N/A	N/A	N/A	N/A
PHROG	UHGV-0088399_37	phrog_1129	67.7	1.3e-19	holin	lysis
UniRef90	UHGV-0088399_37	UniRef90_A0A0D8J2M2	116.0	3.41e-32	Enolase	N/A
eggNOG-mapper	UHGV-0088399_37	665956.HMPREF1032_03272	115.0	1.59e-32	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-0088399_37	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0088399_37	PF06946	N/A	N/A	N/A	N/A
PHROG	UHGV-0088399_38	phrog_1863	66.6	2.4e-19	N/A	unknown function
eggNOG-mapper	UHGV-0088399_38	748224.HMPREF9436_01412	94.7	9.09e-25	N/A	N/A
UniRef90	UHGV-0088399_39	UniRef90_K1S1E0	165.0	0	Gp7 (Fragment)	N/A
eggNOG-mapper	UHGV-0088399_39	1430331.EP10_10365	64.3	0.00000000133	N/A	N/A
Pfam	UHGV-0088399_39	PF13290	N/A	N/A	Chitobiase/beta-hexosaminidase C-terminal domain	CHB_HEX_C_1