UHGV-0088744 (vOTU-018236)

Viral Genome: UHGV-0088744

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0088744
vOTU ID	vOTU-018236
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_176120
Associated BioSample	SAMEA3449162
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	62.16 (Medium-quality)
Trimmed provirus	Yes
CheckV viral markers	17
CheckV host markers	4
Recoded stop codon	No

Viral Content
geNomad score	0.9783
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	32.01
Jumbo phage	No

Genome content
Genome length (bp)	39,107
GC content	39.52%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	63
CDS density	87%
Average CDS length (bps)	538.29
Total tRNA genes	6
Suppressor tRNA genes	1

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 62.16)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0088744_1	K07273	185.6	0	acm; lysozyme	N/A
PHROG	UHGV-0088744_1	phrog_291	148.2	7.14662e-44	endolysin	lysis
UniRef90	UHGV-0088744_1	UniRef90_D4M5A7	671.0	0	Lyzozyme M1 (1,4-beta-N-acetylmuramidase)	N/A
eggNOG-mapper	UHGV-0088744_1	515620.EUBELI_01316	199.0	0	Glycoside Hydrolase Family 25-like lysozyme endolysin	N/A
Pfam	UHGV-0088744_1	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-0088744_1	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-0088744_1	PF01183,NF003627,COG3757,COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0088744_2	PF13384,NF001074,COG3677	N/A	N/A	N/A	N/A
PHROG	UHGV-0088744_3	phrog_1129	84.1	9.8e-25	holin	lysis
UniRef90	UHGV-0088744_3	UniRef90_A0A893W7Y5	146.0	8.82818e-44	Phage holin family protein	N/A
eggNOG-mapper	UHGV-0088744_3	411460.RUMTOR_01325	141.0	1.41952e-42	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-0088744_3	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0088744_3	PF16079	N/A	N/A	N/A	N/A
PHROG	UHGV-0088744_4	phrog_937	77.8	1.5e-22	hemolysin	other
eggNOG-mapper	UHGV-0088744_4	478749.BRYFOR_07639	108.0	2.58e-29	N/A	N/A
structural_annotation	UHGV-0088744_6	PF17065,NF038127	N/A	N/A	N/A	N/A
PHROG	UHGV-0088744_7	phrog_18444	80.2	1.5e-23	N/A	unknown function
PHROG	UHGV-0088744_8	phrog_6616	629.4	0	tail protein	tail
UniRef90	UHGV-0088744_8	UniRef90_A0A317UCC3	694.0	0	Peptidase S74 domain-containing protein	N/A
eggNOG-mapper	UHGV-0088744_8	476272.RUMHYD_01992	367.0	0	N/A	N/A
structural_annotation	UHGV-0088744_8	PF05954,NF033848,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-0088744_9	phrog_1194	111.3	5.6e-33	N/A	unknown function
eggNOG-mapper	UHGV-0088744_9	1158607.UAU_01771	76.6	2.17e-16	N/A	N/A
Pfam	UHGV-0088744_9	PF20458	N/A	N/A	N/A	DUF6711
structural_annotation	UHGV-0088744_9	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0088744_10	phrog_167	367.3	0	tail length tape measure protein	tail
UniRef90	UHGV-0088744_10	UniRef90_A0A396PS29	1869.0	0	SLT domain-containing protein	N/A
eggNOG-mapper	UHGV-0088744_10	397290.C810_01419	338.0	0	Transglycosylase SLT domain	N/A
Pfam	UHGV-0088744_10	PF01464	N/A	N/A	Transglycosylase SLT domain	SLT
COG	UHGV-0088744_10	COG1280	N/A	N/A	Threonine/homoserine/homoserine lactone efflux protein	N/A
PHROG	UHGV-0088744_13	phrog_158	49.6	0.000000000000074	major tail protein	tail
UniRef90	UHGV-0088744_13	UniRef90_A0A415D4T9	215.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-0088744_13	1232453.BAIF02000058_gene1634	142.0	7.12e-42	N/A	N/A
Pfam	UHGV-0088744_13	PF08813	N/A	N/A	Phage tail tube protein, TTP	Phage_tail_3
structural_annotation	UHGV-0088744_13	PF16463,TIGR02241,COG5437	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0088744_14	PF06141,TIGR02367,COG3167	N/A	N/A	N/A	N/A
PHROG	UHGV-0088744_15	phrog_5	43.2	0.0000000000095	tail completion or Neck1 protein	connector
UniRef90	UHGV-0088744_15	UniRef90_UPI001BBD4500	205.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0088744_15	397290.C810_01411	120.0	4.72e-32	N/A	N/A
AcrCatalog	UHGV-0088744_15	cluster_24841	80.1	5.33e-21	NA	N/A
structural_annotation	UHGV-0088744_15	PF17395,TIGR01725	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0088744_16	1232453.BAIF02000058_gene1630	125.0	1.08e-34	N/A	N/A
eggNOG-mapper	UHGV-0088744_17	397290.C810_01402	96.3	2.16e-24	N/A	N/A
Pfam	UHGV-0088744_17	PF05135	N/A	N/A	Phage gp6-like head-tail connector protein	Phage_connect_1
PHROG	UHGV-0088744_19	phrog_422	212.6	0	major head protein	head and packaging
UniRef90	UHGV-0088744_19	UniRef90_A0A396PR42	486.0	0	N4-gp56 family major capsid protein	N/A
eggNOG-mapper	UHGV-0088744_19	764291.STRUR_2102	290.0	0	N/A	N/A
Pfam	UHGV-0088744_19	PF19821	N/A	N/A	Phage capsid protein	Phage_capsid_2
structural_annotation	UHGV-0088744_19	PF19821,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0088744_20	PF14265,NF038403	N/A	N/A	N/A	N/A
PHROG	UHGV-0088744_21	phrog_2468	59.1	7.2e-17	head morphogenesis	head and packaging
UniRef90	UHGV-0088744_21	UniRef90_A0A396PS39	375.0	0	Phage_Mu_F domain-containing protein	N/A
Pfam	UHGV-0088744_21	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
COG	UHGV-0088744_21	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0088744_21	PF04233,TIGR01641	N/A	N/A	N/A	N/A
PHROG	UHGV-0088744_22	phrog_64	155.8	0	portal protein	head and packaging
UniRef90	UHGV-0088744_22	UniRef90_A0A396PR41	918.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0088744_22	476272.RUMHYD_01943	329.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0088744_22	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0088744_22	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
UniRef90	UHGV-0088744_23	UniRef90_A0A173S6N5	238.0	0	RNA polymerase sigma factor, sigma-70 family	N/A
eggNOG-mapper	UHGV-0088744_23	1232453.BAIF02000058_gene1624	133.0	6.17e-38	N/A	N/A
structural_annotation	UHGV-0088744_23	PF04545,MF_00245,TIGR01636,COG2739	N/A	N/A	N/A	N/A
PHROG	UHGV-0088744_24	phrog_38	150.4	1.12104e-44	terminase large subunit	head and packaging
UniRef90	UHGV-0088744_24	UniRef90_A0A8D9PG33	489.0	0	Terminase	N/A
eggNOG-mapper	UHGV-0088744_24	1232453.BAIF02000058_gene1623	511.0	0	TIGRFAM Phage	N/A
COG	UHGV-0088744_24	COG5410	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0088744_24	PF17289,PF02562,MF_04147,NF033889,COG5362,COG5410	N/A	N/A	N/A	N/A
UniRef90	UHGV-0088744_26	UniRef90_A0A3E3JYB1	99.4	1.76e-26	Conjugal transfer protein	N/A
Pfam	UHGV-0088744_26	PF14205	N/A	N/A	Cysteine-rich KTR	Cys_rich_KTR
structural_annotation	UHGV-0088744_26	PF14205	N/A	N/A	N/A	N/A
PHROG	UHGV-0088744_27	phrog_3886	271.5	0	N/A	unknown function
eggNOG-mapper	UHGV-0088744_27	742740.HMPREF9474_02292	265.0	0	N/A	N/A
KOfam	UHGV-0088744_28	K03744	157.3	0	lemA; LemA protein	N/A
PHROG	UHGV-0088744_28	phrog_1383	165.8	0	virion structural protein	head and packaging
UniRef90	UHGV-0088744_28	UniRef90_A0A893W810	337.0	0	LemA family protein	N/A
eggNOG-mapper	UHGV-0088744_28	742735.HMPREF9467_00879	283.0	0	LemA family	N/A
Pfam	UHGV-0088744_28	PF04011	N/A	N/A	LemA family	LemA
COG	UHGV-0088744_28	COG1704	N/A	N/A	Magnetosome formation protein MamQ, lipoprotein antigen LemA family	N/A
structural_annotation	UHGV-0088744_28	PF04011,NF040966,COG1704	N/A	N/A	N/A	N/A
PHROG	UHGV-0088744_29	phrog_918	91.2	6.7e-27	N/A	unknown function
UniRef90	UHGV-0088744_29	UniRef90_UPI00189D39C2	169.0	0	N/A	N/A
eggNOG-mapper	UHGV-0088744_29	1256908.HMPREF0373_00480	165.0	0	N/A	N/A
Pfam	UHGV-0088744_29	PF19791	N/A	N/A	N/A	DUF6275
structural_annotation	UHGV-0088744_29	PF19791	N/A	N/A	N/A	N/A
PHROG	UHGV-0088744_30	phrog_355	65.2	9.2e-19	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0088744_30	UniRef90_A0A396KGT7	207.0	0	N/A	N/A
eggNOG-mapper	UHGV-0088744_30	97138.C820_00250	132.0	8.66e-39	N/A	N/A
Pfam	UHGV-0088744_30	PF14359	N/A	N/A	N/A	DUF4406
structural_annotation	UHGV-0088744_30	PF14359,COG3613	N/A	N/A	N/A	N/A
PHROG	UHGV-0088744_31	phrog_1048	99.0	7.1e-29	N/A	unknown function
UniRef90	UHGV-0088744_31	UniRef90_A0A415D571	328.0	0	N/A	N/A
eggNOG-mapper	UHGV-0088744_31	457412.RSAG_01107	137.0	4.92e-39	N/A	N/A
Pfam	UHGV-0088744_31	PF11195	N/A	N/A	N/A	DUF2829
dbAPIS	UHGV-0088744_31	APIS029	N/A	N/A	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	N/A
structural_annotation	UHGV-0088744_31	PF11195	N/A	N/A	N/A	N/A
UniRef90	UHGV-0088744_33	UniRef90_A0A6M3L1T0	126.0	4.45e-33	Putative HNH endonuclease (Fragment)	N/A
Pfam	UHGV-0088744_33	PF13391	N/A	N/A	HNH endonuclease	HNH_2
structural_annotation	UHGV-0088744_37	PF06004,NF033216,COG4568	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0088744_39	PF13069	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0088744_40	658655.HMPREF0988_00895	103.0	2.29e-25	N/A	N/A
structural_annotation	UHGV-0088744_40	PF16677	N/A	N/A	N/A	N/A
KOfam	UHGV-0088744_41	K07727	43.6	0.000000000008	K07727; putative transcriptional regulator	N/A
UniRef90	UHGV-0088744_41	UniRef90_A0A3E2WG07	144.0	1.44334e-43	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0088744_41	1235790.C805_00736	122.0	8.66e-36	Transcriptional regulator	N/A
Pfam	UHGV-0088744_41	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
COG	UHGV-0088744_41	COG3655	N/A	N/A	DNA-binding transcriptional regulator, XRE family	N/A
structural_annotation	UHGV-0088744_41	PF13443,NF000090,COG3655	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0088744_43	397290.C810_01347	49.3	0.000000392	N/A	N/A
structural_annotation	UHGV-0088744_43	PF18267	N/A	N/A	N/A	N/A
KOfam	UHGV-0088744_47	K01520	56.2	5.9e-16	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	N/A
PHROG	UHGV-0088744_47	phrog_135	78.5	1e-22	dUTPase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0088744_47	UniRef90_A0A373KP38	179.0	0	Deoxyuridine 5'-triphosphate nucleotidohydrolase	N/A
eggNOG-mapper	UHGV-0088744_47	1236976.JCM16418_5019	169.0	0	dUTPase	N/A
Pfam	UHGV-0088744_47	PF00692	N/A	N/A	dUTPase	dUTPase
COG	UHGV-0088744_47	COG0756	N/A	N/A	dUTP pyrophosphatase (dUTPase)	N/A
structural_annotation	UHGV-0088744_47	PF00692,MF_00116,TIGR00576,COG0756	N/A	N/A	N/A	N/A
PHROG	UHGV-0088744_50	phrog_8684	81.2	2e-24	N/A	unknown function
UniRef90	UHGV-0088744_50	UniRef90_A0A373MXN9	308.0	0	YopX domain-containing protein	N/A
eggNOG-mapper	UHGV-0088744_50	457412.RSAG_01162	165.0	0	YopX protein	N/A
Pfam	UHGV-0088744_50	PF09643	N/A	N/A	YopX protein	YopX
structural_annotation	UHGV-0088744_50	PF09643,TIGR01671	N/A	N/A	N/A	N/A
PHROG	UHGV-0088744_51	phrog_22292	108.2	6e-32	N/A	unknown function
PHROG	UHGV-0088744_52	phrog_20593	55.6	8.5e-16	N/A	unknown function
PHROG	UHGV-0088744_53	phrog_924	45.3	0.0000000000018	N/A	unknown function
UniRef90	UHGV-0088744_53	UniRef90_A0A373MXP0	232.0	0	N/A	N/A
eggNOG-mapper	UHGV-0088744_53	411462.DORLON_00804	49.7	0.00000407	N/A	N/A
Pfam	UHGV-0088744_53	PF04448	N/A	N/A	N/A	DUF551
eggNOG-mapper	UHGV-0088744_54	887325.HMPREF0381_0090	94.7	3.47e-24	N/A	N/A
PHROG	UHGV-0088744_55	phrog_26445	89.1	4e-26	N/A	unknown function
UniRef90	UHGV-0088744_55	UniRef90_UPI001EDD5E1E	147.0	1.17709e-43	Trp family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0088744_55	742765.HMPREF9457_02112	85.5	3.95e-20	N/A	N/A
structural_annotation	UHGV-0088744_55	PF00196	N/A	N/A	N/A	N/A
PHROG	UHGV-0088744_56	phrog_25456	79.2	5e-23	N/A	unknown function
structural_annotation	UHGV-0088744_58	PF06442,MF_01194,NF000331,COG4014	N/A	N/A	N/A	N/A
PHROG	UHGV-0088744_60	phrog_9822	156.7	0	N/A	unknown function
eggNOG-mapper	UHGV-0088744_61	457412.RSAG_01159	261.0	0	N/A	N/A
eggNOG-mapper	UHGV-0088744_63	1298920.KI911353_gene2720	63.5	0.000000000116	N/A	N/A