UHGV-0088811 (vOTU-068096)

Viral Genome: UHGV-0088811

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0088811
vOTU ID	vOTU-068096
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_174071
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.34 (High-quality)
Trimmed provirus	Yes
CheckV viral markers	11
CheckV host markers	4
Recoded stop codon	No

Viral Content
geNomad score	0.9682
Virus hallmark genes (geNomad)	14
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	25.94
Jumbo phage	No

Genome content
Genome length (bp)	35,160
GC content	37.20%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	58
CDS density	90%
Average CDS length (bps)	542.74
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 99.34)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
UniRef90	UHGV-0088811_1	UniRef90_A0A1Y4H070	82.0	2.63e-19	Chemotaxis protein	N/A
eggNOG-mapper	UHGV-0088811_1	1304866.K413DRAFT_0813	62.4	0.00000000000244	N/A	N/A
structural_annotation	UHGV-0088811_1	PF10723,NF008671,COG4710	N/A	N/A	N/A	N/A
PHROG	UHGV-0088811_2	phrog_4980	208.0	0	superinfection exclusion	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0088811_2	UniRef90_A0A417C3D7	114.0	1.27e-27	Immunity protein	N/A
eggNOG-mapper	UHGV-0088811_2	1408823.AXUS01000009_gene1981	93.6	7.19e-21	Host cell surface-exposed lipoprotein	N/A
Pfam	UHGV-0088811_2	PF07553	N/A	N/A	Host cell surface-exposed lipoprotein	Lipoprotein_Ltp
COG	UHGV-0088811_2	COG3064	N/A	N/A	Membrane protein TolA involved in colicin uptake	N/A
structural_annotation	UHGV-0088811_2	PF02631,MF_01114,NF001062,COG2137	N/A	N/A	N/A	N/A
KOfam	UHGV-0088811_3	K07727	40.7	0.000000000057	K07727; putative transcriptional regulator	N/A
UniRef90	UHGV-0088811_3	UniRef90_A0A1V0QEI2	70.5	0.0000000000000106	Transcriptional regulator	N/A
eggNOG-mapper	UHGV-0088811_3	1280698.AUJS01000007_gene1001	61.6	0.00000000000565	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-0088811_3	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-0088811_3	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0088811_6	K22300	41.0	0.000000000037	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0088811_6	phrog_8	41.9	0.000000000015	transcriptional regulator	transcription regulation
UniRef90	UHGV-0088811_6	UniRef90_UPI001BC85B83	117.0	1.57e-31	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0088811_6	903814.ELI_1263	88.6	5.82e-21	Helix-turn-helix domain	N/A
Pfam	UHGV-0088811_6	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0088811_6	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0088811_6	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0088811_10	PF21441,TIGR04176,COG1846	N/A	N/A	N/A	N/A
UniRef90	UHGV-0088811_12	UniRef90_UPI0019FC5CCD	48.9	0.00000667	N/A	N/A
structural_annotation	UHGV-0088811_12	PF11195	N/A	N/A	N/A	N/A
PHROG	UHGV-0088811_13	phrog_8	45.3	0.000000000000012	transcriptional regulator	transcription regulation
UniRef90	UHGV-0088811_13	UniRef90_A0A414B860	206.0	0	XRE family transcriptional regulator	N/A
Pfam	UHGV-0088811_13	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0088811_13	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-0088811_13	PF01381,PF12728,MF_00535,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0088811_18	K03496	170.2	0	parA, soj; chromosome partitioning protein	N/A
PHROG	UHGV-0088811_18	phrog_164	158.6	0	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0088811_18	UniRef90_A0A414B859	484.0	0	ParA family protein	N/A
eggNOG-mapper	UHGV-0088811_18	411470.RUMGNA_00210	243.0	0	CobQ CobB MinD ParA nucleotide binding domain protein	N/A
Pfam	UHGV-0088811_18	PF13614	N/A	N/A	AAA domain	AAA_31
COG	UHGV-0088811_18	COG1192	N/A	N/A	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	N/A
structural_annotation	UHGV-0088811_18	PF13614,MF_00533,TIGR03453,COG1192	N/A	N/A	N/A	N/A
KOfam	UHGV-0088811_19	K03497	67.2	3.6e-19	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	N/A
PHROG	UHGV-0088811_19	phrog_15982	280.5	0	N/A	unknown function
UniRef90	UHGV-0088811_19	UniRef90_A0A414B854	483.0	0	ParB domain-containing protein	N/A
eggNOG-mapper	UHGV-0088811_19	1235792.C808_00072	235.0	0	ParB-like nuclease domain	N/A
Pfam	UHGV-0088811_19	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
COG	UHGV-0088811_19	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-0088811_19	PF02195,MF_02015,TIGR04285,COG1475	N/A	N/A	N/A	N/A
PHROG	UHGV-0088811_22	phrog_15768	101.9	9.5e-30	N/A	unknown function
UniRef90	UHGV-0088811_22	UniRef90_A0A1H8R574	101.0	1.48e-22	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0088811_22	742740.HMPREF9474_03492	148.0	4.50994e-41	DnaD domain protein	N/A
Pfam	UHGV-0088811_22	PF13730	N/A	N/A	Helix-turn-helix domain	HTH_36
COG	UHGV-0088811_22	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-0088811_22	PF10771,MF_01177,TIGR01714,COG5529	N/A	N/A	N/A	N/A
UniRef90	UHGV-0088811_24	UniRef90_A0A1C5MB66	205.0	0	N/A	N/A
Pfam	UHGV-0088811_24	PF19789	N/A	N/A	N/A	DUF6273
structural_annotation	UHGV-0088811_24	PF19789	N/A	N/A	N/A	N/A
COG	UHGV-0088811_27	COG0553	N/A	N/A	Superfamily II DNA or RNA helicase, SNF2 family	N/A
eggNOG-mapper	UHGV-0088811_28	397290.C810_01505	121.0	7.5e-35	N/A	N/A
KOfam	UHGV-0088811_29	K22300	54.9	2.7e-25	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0088811_29	phrog_3	47.2	2.6e-21	transcriptional repressor	transcription regulation
UniRef90	UHGV-0088811_29	UniRef90_A0A414B864	347.0	0	XRE family transcriptional regulator	N/A
Pfam	UHGV-0088811_29	PF13413	N/A	N/A	Helix-turn-helix domain	HTH_25
Pfam	UHGV-0088811_29	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
NCBIFam	UHGV-0088811_29	NF041951.1	N/A	N/A	RstR family transcriptional repressor	N/A
COG	UHGV-0088811_29	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
PHROG	UHGV-0088811_30	phrog_36	50.6	0.000000000000038	transcriptional regulator	transcription regulation
eggNOG-mapper	UHGV-0088811_30	411490.ANACAC_00789	80.9	3.58e-17	N/A	N/A
structural_annotation	UHGV-0088811_30	PF02996	N/A	N/A	N/A	N/A
KOfam	UHGV-0088811_32	K04763	96.5	4.3e-28	xerD; integrase/recombinase XerD	N/A
PHROG	UHGV-0088811_32	phrog_216	145.5	2.60642e-43	integrase	integration and excision
UniRef90	UHGV-0088811_32	UniRef90_A0A414B850	300.0	0	Site-specific integrase	N/A
eggNOG-mapper	UHGV-0088811_32	1235793.C809_02656	171.0	0	PFAM Phage integrase family	N/A
Pfam	UHGV-0088811_32	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0088811_32	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0088811_32	PF00589,MF_02055,NF040815,COG4973	N/A	N/A	N/A	N/A
UniRef90	UHGV-0088811_33	UniRef90_A0A414B845	128.0	1.28e-37	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0088811_33	476272.RUMHYD_03617	59.3	0.0000000000641	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-0088811_33	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0088811_33	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0088811_33	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0088811_34	phrog_119	63.1	4.1e-18	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0088811_34	UniRef90_A0A414B846	214.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0088811_34	908340.HMPREF9406_2583	167.0	0	HNH nucleases	N/A
COG	UHGV-0088811_34	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-0088811_34	TIGR02646	N/A	N/A	N/A	N/A
UniRef90	UHGV-0088811_35	UniRef90_UPI001A918125	62.8	0.000000000362	P27 family phage terminase small subunit	N/A
eggNOG-mapper	UHGV-0088811_35	358681.BBR47_29130	63.2	0.0000000000402	Phage terminase, small subunit	N/A
COG	UHGV-0088811_35	COG3747	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-0088811_35	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-0088811_36	phrog_9	305.1	0	terminase large subunit	head and packaging
UniRef90	UHGV-0088811_36	UniRef90_A0A414B844	1140.0	0	Terminase large subunit	N/A
eggNOG-mapper	UHGV-0088811_36	1235798.C817_04582	655.0	0	Phage Terminase	N/A
Pfam	UHGV-0088811_36	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0088811_36	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0088811_36	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0088811_36	PF20441,PF03354,MF_04013,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0088811_37	phrog_12	159.7	0	portal protein	head and packaging
UniRef90	UHGV-0088811_37	UniRef90_A0A414B8G4	803.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0088811_37	1232446.BAIE02000002_gene824	520.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-0088811_37	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0088811_37	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0088811_37	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0088811_37	PF04860,MF_04120,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-0088811_38	K06904	145.8	4.1058e-43	N/A	N/A
PHROG	UHGV-0088811_38	phrog_80	181.6	0	head maturation protease	head and packaging
UniRef90	UHGV-0088811_38	UniRef90_A0A414B834	380.0	0	HK97 family phage prohead protease	N/A
eggNOG-mapper	UHGV-0088811_38	1232446.BAIE02000002_gene825	251.0	0	Phage prohead protease, HK97 family	N/A
Pfam	UHGV-0088811_38	PF04586	N/A	N/A	Caudovirus prohead serine protease	Peptidase_S78
NCBIFam	UHGV-0088811_38	TIGR01543.1	N/A	N/A	HK97 family phage prohead protease	N/A
COG	UHGV-0088811_38	COG3740	N/A	N/A	Phage head maturation protease	N/A
structural_annotation	UHGV-0088811_38	PF04586,TIGR01543,COG3740	N/A	N/A	N/A	N/A
PHROG	UHGV-0088811_39	phrog_10	181.5	0	major head protein	head and packaging
UniRef90	UHGV-0088811_39	UniRef90_A0A414B839	744.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0088811_39	908340.HMPREF9406_2577	395.0	0	phage major capsid protein, HK97 family	N/A
Pfam	UHGV-0088811_39	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0088811_39	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0088811_39	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0088811_39	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0088811_40	phrog_2550	77.2	1.3e-22	N/A	unknown function
eggNOG-mapper	UHGV-0088811_40	1235798.C817_04586	89.0	6.17e-22	N/A	N/A
structural_annotation	UHGV-0088811_40	PF05135,TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-0088811_41	phrog_19734	100.1	2e-29	N/A	unknown function
UniRef90	UHGV-0088811_41	UniRef90_A0A414B852	225.0	0	Head-tail adaptor protein	N/A
eggNOG-mapper	UHGV-0088811_41	1235798.C817_04587	155.0	0	N/A	N/A
structural_annotation	UHGV-0088811_41	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0088811_42	1235798.C817_04588	130.0	5.81e-38	N/A	N/A
structural_annotation	UHGV-0088811_42	PF05657	N/A	N/A	N/A	N/A
PHROG	UHGV-0088811_43	phrog_5	51.3	0.000000000000026	tail completion or Neck1 protein	connector
UniRef90	UHGV-0088811_43	UniRef90_R6UNR2	171.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0088811_43	1235798.C817_04589	236.0	0	N/A	N/A
NCBIFam	UHGV-0088811_43	TIGR01725.1	N/A	N/A	HK97-gp10 family putative phage morphogenesis protein	N/A
structural_annotation	UHGV-0088811_43	TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-0088811_44	phrog_88	89.6	3.6e-26	major tail protein	tail
UniRef90	UHGV-0088811_44	UniRef90_A0A414B835	377.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-0088811_44	33035.JPJF01000039_gene278	182.0	0	N/A	N/A
structural_annotation	UHGV-0088811_44	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0088811_45	1235798.C817_04591	167.0	0	N/A	N/A
structural_annotation	UHGV-0088811_45	PF11836	N/A	N/A	N/A	N/A
KOfam	UHGV-0088811_46	K10421	65.1	3.1e-19	CLIP1, RSN; CAP-Gly domain-containing linker protein 1	N/A
PHROG	UHGV-0088811_46	phrog_5218	250.8	0	N/A	unknown function
UniRef90	UHGV-0088811_46	UniRef90_A0A414B831	1155.0	0	PhageMin_Tail domain-containing protein	N/A
eggNOG-mapper	UHGV-0088811_46	1235798.C817_04592	491.0	0	Phage-related minor tail protein	N/A
Pfam	UHGV-0088811_46	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
COG	UHGV-0088811_46	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
structural_annotation	UHGV-0088811_46	TIGR01760,COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-0088811_47	phrog_33	78.5	1.5e-22	distal tail protein Dit	tail
UniRef90	UHGV-0088811_47	UniRef90_A0A414B833	481.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-0088811_47	1235798.C817_04593	238.0	0	phage tail	N/A
NCBIFam	UHGV-0088811_47	TIGR01633.1	N/A	N/A	distal tail protein Dit	N/A
COG	UHGV-0088811_47	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0088811_47	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0088811_48	phrog_13289	354.4	0	tail protein	tail
UniRef90	UHGV-0088811_48	UniRef90_A0A414B824	1377.0	0	Prophage_tail domain-containing protein	N/A
eggNOG-mapper	UHGV-0088811_48	1235798.C817_02568	582.0	0	Prophage endopeptidase tail	N/A
Pfam	UHGV-0088811_48	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0088811_48	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0088811_48	COG2885	N/A	N/A	Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins	N/A
PHROG	UHGV-0088811_49	phrog_16164	236.2	0	N/A	unknown function
eggNOG-mapper	UHGV-0088811_49	457412.RSAG_01113	75.9	0.00000000000014	N/A	N/A
structural_annotation	UHGV-0088811_49	PF10651,NF032891	N/A	N/A	N/A	N/A
UniRef90	UHGV-0088811_50	UniRef90_UPI001D075611	261.0	0	GDSL-type esterase/lipase family protein	N/A
eggNOG-mapper	UHGV-0088811_50	476272.RUMHYD_00002	81.3	0.00000000000081	N/A	N/A
PHROG	UHGV-0088811_51	phrog_2310	44.7	0.0000000000015	N/A	unknown function
UniRef90	UHGV-0088811_52	UniRef90_A0A413WS40	67.0	0.00000000000013	Ribbon-helix-helix protein, CopG family	N/A
structural_annotation	UHGV-0088811_52	PF01402,NF041793,COG4710	N/A	N/A	N/A	N/A
KOfam	UHGV-0088811_54	K03733	206.2	0	xerC; integrase/recombinase XerC	N/A
PHROG	UHGV-0088811_54	phrog_1	166.6	0	integrase	integration and excision
UniRef90	UHGV-0088811_54	UniRef90_A0A414B829	648.0	0	Integrase	N/A
eggNOG-mapper	UHGV-0088811_54	1235793.C809_01951	249.0	0	Phage integrase, N-terminal SAM-like domain	N/A
Pfam	UHGV-0088811_54	PF13495	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
Pfam	UHGV-0088811_54	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0088811_54	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0088811_54	PF00589,PF02899,MF_01807,TIGR02224,COG4973	N/A	N/A	N/A	N/A
PHROG	UHGV-0088811_57	phrog_199	45.5	0.00000000000088	holin	lysis
UniRef90	UHGV-0088811_57	UniRef90_A0A414B826	215.0	0	Holin	N/A
eggNOG-mapper	UHGV-0088811_57	394503.Ccel_2943	57.0	0.0000000147	toxin secretion phage lysis holin	N/A
Pfam	UHGV-0088811_57	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-0088811_57	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-0088811_57	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-0088811_57	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
KOfam	UHGV-0088811_58	K07273	130.8	1.3e-38	acm; lysozyme	N/A
PHROG	UHGV-0088811_58	phrog_291	119.2	4.6e-35	endolysin	lysis
UniRef90	UHGV-0088811_58	UniRef90_A0A174K8T9	506.0	0	Lyzozyme M1 (1,4-beta-N-acetylmuramidase)	N/A
eggNOG-mapper	UHGV-0088811_58	1235800.C819_00458	165.0	0	Glycosyl hydrolases family 25	N/A
Pfam	UHGV-0088811_58	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-0088811_58	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-0088811_58	PF01183,PF01471,MF_02227,NF007360,COG3757,COG3409	N/A	N/A	N/A	N/A