UHGV-0088913 (vOTU-045284)

Viral Genome: UHGV-0088913

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0088913
vOTU ID	vOTU-045284
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_195175
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100 (Complete)
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9819
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	37.26
Jumbo phage	No

Genome content
Genome length (bp)	43,118
GC content	56.55%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	59
CDS density	94%
Average CDS length (bps)	688.07
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0088913_1	phrog_20437	89.8	3.4e-26	DNA replication initiation	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0088913_1	UniRef90_A0A3D0X9I8	123.0	2.14e-34	DNA replication protein DnaD (Fragment)	N/A
eggNOG-mapper	UHGV-0088913_1	445971.ANASTE_00700	108.0	5.25e-28	N/A	N/A
Pfam	UHGV-0088913_1	PF14297	N/A	N/A	Lin1244/Lin1753-like, N-terminal	Lin1244_N
COG	UHGV-0088913_1	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
KOfam	UHGV-0088913_2	K03111	120.9	1.8e-35	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0088913_2	phrog_44	118.8	5.5e-35	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0088913_2	UniRef90_G4KXN0	145.0	5.48048e-42	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0088913_2	1007096.BAGW01000007_gene1922	145.0	8.39378e-43	Single-strand binding protein family	N/A
Pfam	UHGV-0088913_2	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0088913_2	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0088913_2	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0088913_2	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0088913_2	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
KOfam	UHGV-0088913_3	K07455	291.9	0	recT; recombination protein RecT	N/A
PHROG	UHGV-0088913_3	phrog_148	275.0	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0088913_3	UniRef90_U2SBP2	431.0	0	Recombination and repair protein RecT	N/A
eggNOG-mapper	UHGV-0088913_3	1226322.HMPREF1545_00015	431.0	0	RecT family	N/A
Pfam	UHGV-0088913_3	PF03837	N/A	N/A	RecT family	RecT
NCBIFam	UHGV-0088913_3	TIGR00616.1	N/A	N/A	recombinase, phage RecT family	N/A
COG	UHGV-0088913_3	COG3723	N/A	N/A	Recombinational DNA repair protein RecT	N/A
structural_annotation	UHGV-0088913_3	PF03837,NF007351,COG3723	N/A	N/A	N/A	N/A
PHROG	UHGV-0088913_4	phrog_434	284.9	0	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0088913_4	UniRef90_U2SK35	415.0	0	YqaJ viral recombinase family protein	N/A
eggNOG-mapper	UHGV-0088913_4	1226322.HMPREF1545_00014	415.0	0	YqaJ viral recombinase family	N/A
Pfam	UHGV-0088913_4	PF09588	N/A	N/A	YqaJ-like viral recombinase domain	YqaJ
NCBIFam	UHGV-0088913_4	TIGR03033.1	N/A	N/A	putative phage-type endonuclease	N/A
COG	UHGV-0088913_4	COG5377	N/A	N/A	Phage-related protein, predicted endonuclease	N/A
structural_annotation	UHGV-0088913_4	PF09588,MF_03030,TIGR03033,COG5377	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0088913_7	PF11112,COG3311	N/A	N/A	N/A	N/A
KOfam	UHGV-0088913_8	K07741	218.5	0	antB; anti-repressor protein	N/A
PHROG	UHGV-0088913_8	phrog_63	181.6	0	anti-repressor Ant	transcription regulation
UniRef90	UHGV-0088913_8	UniRef90_UPI000466CBED	365.0	0	phage antirepressor KilAC domain-containing protein	N/A
eggNOG-mapper	UHGV-0088913_8	1232443.BAIA02000079_gene53	365.0	0	AntA/AntB antirepressor	N/A
Pfam	UHGV-0088913_8	PF08346	N/A	N/A	AntA/AntB antirepressor	AntA
Pfam	UHGV-0088913_8	PF03374	N/A	N/A	Phage antirepressor protein KilAC domain	ANT
COG	UHGV-0088913_8	COG3561	N/A	N/A	Phage anti-repressor protein Ant	N/A
structural_annotation	UHGV-0088913_8	PF03374,PF08346,TIGR02681,COG3645,COG3561	N/A	N/A	N/A	N/A
PHROG	UHGV-0088913_9	phrog_8	48.4	0.00000000000024	transcriptional regulator	transcription regulation
UniRef90	UHGV-0088913_9	UniRef90_A0A174FRM3	91.3	1.92e-20	Helix-turn-helix domain	N/A
eggNOG-mapper	UHGV-0088913_9	665950.HMPREF1025_02562	92.8	5.86e-22	TRANSCRIPTIONal	N/A
COG	UHGV-0088913_9	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
UniRef90	UHGV-0088913_12	UniRef90_A0A354UMM3	54.7	0.000000789	HTH cro/C1-type domain-containing protein	N/A
Pfam	UHGV-0088913_12	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0088913_12	COG4636	N/A	N/A	Endonuclease, Uma2 family (restriction endonuclease fold)	N/A
structural_annotation	UHGV-0088913_12	PF01381,MF_02017,TIGR03070,COG3655	N/A	N/A	N/A	N/A
KOfam	UHGV-0088913_13	K14059	144.7	1.10002e-42	int; integrase	N/A
PHROG	UHGV-0088913_13	phrog_1	148.3	6.30584e-44	integrase	integration and excision
UniRef90	UHGV-0088913_13	UniRef90_A0A1C5W824	546.0	0	Integrase	N/A
eggNOG-mapper	UHGV-0088913_13	693746.OBV_41260	296.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0088913_13	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0088913_13	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0088913_13	PF00589,MF_01807,TIGR02224,COG4973	N/A	N/A	N/A	N/A
UniRef90	UHGV-0088913_16	UniRef90_A0A345BNU6	54.3	0.00000133	Spore surface glycoprotein	N/A
structural_annotation	UHGV-0088913_16	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-0088913_17	phrog_16490	59.4	8.5e-17	N/A	unknown function
eggNOG-mapper	UHGV-0088913_17	476272.RUMHYD_01770	52.8	0.00000928	N/A	N/A
PHROG	UHGV-0088913_18	phrog_22984	44.4	0.0000000000033	N/A	unknown function
UniRef90	UHGV-0088913_20	UniRef90_A0A8D9PDQ3	79.3	5.27e-18	ECF sigma factor	N/A
Pfam	UHGV-0088913_20	PF08281	N/A	N/A	Sigma-70, region 4	Sigma70_r4_2
structural_annotation	UHGV-0088913_20	PF04545,MF_00674,NF009179,COG1342	N/A	N/A	N/A	N/A
KOfam	UHGV-0088913_21	K17733	94.7	9.9e-28	cwlK; peptidoglycan LD-endopeptidase CwlK [EC:3.4.-.-]	N/A
PHROG	UHGV-0088913_21	phrog_6523	80.1	3.2e-23	endolysin	lysis
UniRef90	UHGV-0088913_21	UniRef90_R5RXG6	221.0	0	Serine-type D-Ala-D-Ala carboxypeptidase	N/A
eggNOG-mapper	UHGV-0088913_21	1519439.JPJG01000023_gene536	215.0	0	D-alanyl-D-alanine carboxypeptidase	N/A
Pfam	UHGV-0088913_21	PF13539	N/A	N/A	D-alanyl-D-alanine carboxypeptidase	Peptidase_M15_4
COG	UHGV-0088913_21	COG1876	N/A	N/A	LD-carboxypeptidase LdcB, LAS superfamily	N/A
structural_annotation	UHGV-0088913_21	PF02557,MF_01924,NF000380,COG1876	N/A	N/A	N/A	N/A
PHROG	UHGV-0088913_22	phrog_13256	67.3	1.4e-19	N/A	unknown function
eggNOG-mapper	UHGV-0088913_22	1226322.HMPREF1545_00132	78.2	3.54e-18	N/A	N/A
PHROG	UHGV-0088913_24	phrog_937	45.8	0.0000000000011	hemolysin	other
eggNOG-mapper	UHGV-0088913_24	1519439.JPJG01000023_gene533	73.9	6.73e-16	N/A	N/A
PHROG	UHGV-0088913_25	phrog_22978	442.6	0	N/A	unknown function
UniRef90	UHGV-0088913_25	UniRef90_A0A3D4D8G0	470.0	0	PBECR5 domain-containing protein	N/A
eggNOG-mapper	UHGV-0088913_25	693746.OBV_01590	524.0	0	N/A	N/A
Pfam	UHGV-0088913_25	PF18814	N/A	N/A	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease5	PBECR5
eggNOG-mapper	UHGV-0088913_26	1519439.JPJG01000060_gene1904	137.0	2.1e-33	N/A	N/A
PHROG	UHGV-0088913_27	phrog_511	188.6	0	internal virion protein	head and packaging
eggNOG-mapper	UHGV-0088913_27	1226322.HMPREF1545_00785	441.0	0	N/A	N/A
structural_annotation	UHGV-0088913_27	PF11134,TIGR03300,NF038126,COG1520	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0088913_29	PF18707,NF041740,COG5501	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0088913_30	1226322.HMPREF1545_00783	77.0	0.000000000000494	Chaperone of endosialidase	N/A
structural_annotation	UHGV-0088913_30	PF07902,NF041249	N/A	N/A	N/A	N/A
PHROG	UHGV-0088913_31	phrog_12105	58.7	1.2e-16	N/A	unknown function
eggNOG-mapper	UHGV-0088913_31	1519439.JPJG01000060_gene1891	56.6	0.0000000144	N/A	N/A
PHROG	UHGV-0088913_32	phrog_27545	139.8	9.99967e-42	N/A	unknown function
UniRef90	UHGV-0088913_32	UniRef90_A0A2V2GQB6	157.0	8.40779e-45	Chitin-binding type-3 domain-containing protein	N/A
eggNOG-mapper	UHGV-0088913_32	1519439.JPJG01000060_gene1895	354.0	0	N/A	N/A
Pfam	UHGV-0088913_32	PF02839	N/A	N/A	Carbohydrate-binding module family 5/12	CBM_5_12
structural_annotation	UHGV-0088913_32	PF16170	N/A	N/A	N/A	N/A
PHROG	UHGV-0088913_33	phrog_10993	260.3	0	Hoc-like head decoration	head and packaging
UniRef90	UHGV-0088913_33	UniRef90_A0A3D4D8F0	559.0	0	N/A	N/A
eggNOG-mapper	UHGV-0088913_33	1121334.KB911071_gene1970	241.0	0	N/A	N/A
Pfam	UHGV-0088913_33	PF19789	N/A	N/A	N/A	DUF6273
structural_annotation	UHGV-0088913_33	PF19789	N/A	N/A	N/A	N/A
KOfam	UHGV-0088913_34	K19721	176.8	0	COL5AS; collagen type V/XI/XXIV/XXVII, alpha	N/A
PHROG	UHGV-0088913_34	phrog_6320	102.9	0	tail fiber protein	tail
UniRef90	UHGV-0088913_34	UniRef90_UPI00068BE71D	409.0	0	collagen-like protein	N/A
eggNOG-mapper	UHGV-0088913_34	1519439.JPJG01000060_gene1892	409.0	0	Collagen triple helix repeat (20 copies)	N/A
Pfam	UHGV-0088913_34	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
COG	UHGV-0088913_34	COG3064	N/A	N/A	Membrane protein TolA involved in colicin uptake	N/A
structural_annotation	UHGV-0088913_34	PF10651,NF033814	N/A	N/A	N/A	N/A
PHROG	UHGV-0088913_35	phrog_15239	77.2	1.7e-22	N/A	unknown function
eggNOG-mapper	UHGV-0088913_35	1449126.JQKL01000003_gene1694	52.0	0.000000461	N/A	N/A
PHROG	UHGV-0088913_36	phrog_1357	254.3	0	major head protein	head and packaging
UniRef90	UHGV-0088913_36	UniRef90_A0A8D9UH64	497.0	0	Major capsid protein	N/A
eggNOG-mapper	UHGV-0088913_36	1449126.JQKL01000003_gene1695	456.0	0	N/A	N/A
Pfam	UHGV-0088913_36	PF13252	N/A	N/A	N/A	DUF4043
NCBIFam	UHGV-0088913_36	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-0088913_36	PF13252,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0088913_37	phrog_13908	258.0	0	N/A	unknown function
eggNOG-mapper	UHGV-0088913_37	1410650.JHWL01000003_gene2831	97.1	3.96e-20	N/A	N/A
structural_annotation	UHGV-0088913_38	NF011128,COG2868	N/A	N/A	N/A	N/A
PHROG	UHGV-0088913_39	phrog_156	322.7	0	portal protein	head and packaging
UniRef90	UHGV-0088913_39	UniRef90_A0A8D9UH10	682.0	0	Portal protein	N/A
eggNOG-mapper	UHGV-0088913_39	748224.HMPREF9436_01396	483.0	0	N/A	N/A
structural_annotation	UHGV-0088913_39	PF16510,MF_04120,TIGR01538,COG4383	N/A	N/A	N/A	N/A
KOfam	UHGV-0088913_40	K06909	103.0	4e-30	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0088913_40	phrog_979	151.5	0	terminase large subunit	head and packaging
UniRef90	UHGV-0088913_40	UniRef90_A0A1Y4WJ48	699.0	0	Terminase-like family protein	N/A
eggNOG-mapper	UHGV-0088913_40	748224.HMPREF9436_01395	561.0	0	Terminase-like family	N/A
Pfam	UHGV-0088913_40	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-0088913_40	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0088913_40	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0088913_41	phrog_606	66.6	4.1e-19	terminase small subunit	head and packaging
UniRef90	UHGV-0088913_41	UniRef90_UPI001F487344	153.0	2.8026e-45	DNA-packaging protein	N/A
eggNOG-mapper	UHGV-0088913_41	1105031.HMPREF1141_0597	135.0	1.43e-39	DNA-packaging protein gp3	N/A
Pfam	UHGV-0088913_41	PF16677	N/A	N/A	DNA-packaging protein gp3	GP3_package
structural_annotation	UHGV-0088913_41	PF16677	N/A	N/A	N/A	N/A
PHROG	UHGV-0088913_47	phrog_3136	134.0	4.7e-40	N/A	unknown function
UniRef90	UHGV-0088913_47	UniRef90_UPI001CBCD733	130.0	8.87e-35	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-0088913_47	1007096.BAGW01000031_gene120	65.5	0.000000000273	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	N/A
COG	UHGV-0088913_47	COG4933	N/A	N/A	Predicted transcriptional regulator, contains an HTH and PUA-like domains	N/A
structural_annotation	UHGV-0088913_47	PF04266,MF_00684,NF008917,COG4933	N/A	N/A	N/A	N/A
PHROG	UHGV-0088913_48	phrog_38832	90.7	1.6e-26	N/A	unknown function
eggNOG-mapper	UHGV-0088913_48	665956.HMPREF1032_00143	97.1	4.52e-23	N/A	N/A
structural_annotation	UHGV-0088913_48	PF18300,MF_01549,TIGR02450	N/A	N/A	N/A	N/A
UniRef90	UHGV-0088913_50	UniRef90_A0A098GES5	91.3	5.46e-22	Putative phage associated protein	N/A
structural_annotation	UHGV-0088913_50	PF01423,MF_00257,NF001963,COG1958	N/A	N/A	N/A	N/A
PHROG	UHGV-0088913_51	phrog_111	154.0	0	DNA methyltransferase	other
UniRef90	UHGV-0088913_51	UniRef90_UPI000F065B6D	211.0	0	adenine methyltransferase	N/A
eggNOG-mapper	UHGV-0088913_51	1450694.BTS2_0497	187.0	0	DNA N-6-adenine-methyltransferase (Dam)	N/A
PADLOC	UHGV-0088913_51	oMTase_00015	190.1	0	orphan methyltransferase	RM
Pfam	UHGV-0088913_51	PF05869	N/A	N/A	DNA N-6-adenine-methyltransferase (Dam)	Dam
structural_annotation	UHGV-0088913_51	PF05869,MF_03187,TIGR01712,COG2263	N/A	N/A	N/A	N/A
PHROG	UHGV-0088913_52	phrog_757	225.7	0	DNA methyltransferase	other
UniRef90	UHGV-0088913_52	UniRef90_UPI0006A41431	254.0	0	DNA cytosine methyltransferase	N/A
eggNOG-mapper	UHGV-0088913_52	1235790.C805_00032	262.0	0	DNA (cytosine-5-)-methyltransferase activity	N/A
COG	UHGV-0088913_52	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0088913_52	PF00145,TIGR00675,COG0270	N/A	N/A	N/A	N/A
Pfam	UHGV-0088913_53	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0088913_53	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0088913_53	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0088913_54	K23779	51.2	2.8e-28	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	N/A
PHROG	UHGV-0088913_54	phrog_8	77.3	4e-23	transcriptional regulator	transcription regulation
UniRef90	UHGV-0088913_54	UniRef90_UPI00115BCC30	57.4	0.000000166	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0088913_54	272560.BPSL0549A	53.5	0.000000705	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-0088913_54	PF13560	N/A	N/A	Helix-turn-helix domain	HTH_31
Pfam	UHGV-0088913_54	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0088913_54	PF01381,PF13744,NF041951,COG3655,COG2944	N/A	N/A	N/A	N/A
PHROG	UHGV-0088913_55	phrog_190	120.4	1.4e-35	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0088913_55	UniRef90_UPI001583F66B	110.0	1.48e-28	N/A	N/A
eggNOG-mapper	UHGV-0088913_55	1226322.HMPREF1545_00295	126.0	7.86e-35	N/A	N/A
Pfam	UHGV-0088913_55	PF06356	N/A	N/A	N/A	DUF1064
structural_annotation	UHGV-0088913_55	PF06356	N/A	N/A	N/A	N/A
PHROG	UHGV-0088913_58	phrog_9804	51.6	0.000000000000016	N/A	unknown function
UniRef90	UHGV-0088913_58	UniRef90_A0A8D9PDS1	90.9	5.72e-21	Replisome organizer	N/A
eggNOG-mapper	UHGV-0088913_58	1121344.JHZO01000003_gene981	78.2	3.18e-16	Loader and inhibitor of phage G40P	N/A
Pfam	UHGV-0088913_58	PF11417	N/A	N/A	Loader and inhibitor of phage G40P	Inhibitor_G39P
structural_annotation	UHGV-0088913_58	PF11417	N/A	N/A	N/A	N/A
PHROG	UHGV-0088913_59	phrog_2562	50.5	0.00000000000001	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0088913_59	UniRef90_A0A1Y4EXZ8	109.0	2.09e-25	N/A	N/A
eggNOG-mapper	UHGV-0088913_59	445972.ANACOL_01828	95.1	8.66e-21	N/A	N/A