UHGV-0090169 (vOTU-006288)

Viral Genome: UHGV-0090169

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0090169
vOTU ID	vOTU-006288
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_183133
Associated BioSample	SAMEA3449225
Viral genome confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100 (Complete)
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9787
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	17.41
Jumbo phage	No

Genome content
Genome length (bp)	41,437
GC content	42.94%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	67
CDS density	93%
Average CDS length (bps)	575.24
Total tRNA genes	1
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0090169_1	phrog_14105	136.7	0	N/A	unknown function
eggNOG-mapper	UHGV-0090169_1	485918.Cpin_3860	64.7	0.00000000166	Pentapeptide repeats (8 copies)	N/A
Pfam	UHGV-0090169_1	PF01469	N/A	N/A	Pentapeptide repeats (8 copies)	Pentapeptide_2
COG	UHGV-0090169_1	COG5263	N/A	N/A	Glucan-binding domain (YG repeat)	N/A
structural_annotation	UHGV-0090169_1	PF01469	N/A	N/A	N/A	N/A
KOfam	UHGV-0090169_4	K00571	119.1	4.9e-35	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-0090169_4	phrog_67	101.5	4.7e-30	DNA methyltransferase	other
UniRef90	UHGV-0090169_4	UniRef90_UPI001D09885E	496.0	0	site-specific DNA-methyltransferase	N/A
eggNOG-mapper	UHGV-0090169_4	658655.HMPREF0988_00878	470.0	0	DNA methylase	N/A
PADLOC	UHGV-0090169_4	MTase_II_00157	97.4	2.4e-28	Type II methyltransferase	RM
Pfam	UHGV-0090169_4	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-0090169_4	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-0090169_4	PF01555,MF_01872,NF010253,COG0863	N/A	N/A	N/A	N/A
KOfam	UHGV-0090169_5	K02315	196.6	0	dnaC; DNA replication protein DnaC	N/A
PHROG	UHGV-0090169_5	phrog_50	178.6	0	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0090169_5	UniRef90_R6DSN6	309.0	0	Replicative DNA helicase	N/A
eggNOG-mapper	UHGV-0090169_5	1123313.ATUT01000003_gene867	183.0	0	IstB-like ATP binding protein	N/A
Pfam	UHGV-0090169_5	PF01695	N/A	N/A	IstB-like ATP binding protein	IstB_IS21
NCBIFam	UHGV-0090169_5	NF005992.0	N/A	N/A	hypothetical protein	N/A
COG	UHGV-0090169_5	COG1484	N/A	N/A	DNA replication protein DnaC	N/A
structural_annotation	UHGV-0090169_5	PF01695,MF_01919,NF005992,COG1484	N/A	N/A	N/A	N/A
PHROG	UHGV-0090169_6	phrog_2514	105.6	4.6e-31	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0090169_6	UniRef90_UPI001C1E0E19	196.0	0	GntR family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0090169_6	646529.Desaci_3039	144.0	3.62e-39	Transcriptional regulator	N/A
COG	UHGV-0090169_6	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0090169_6	PF08222,NF033788,COG0640	N/A	N/A	N/A	N/A
PHROG	UHGV-0090169_7	phrog_1682	86.5	4e-25	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0090169_7	UniRef90_R6DSN2	211.0	0	Crossover junction endodeoxyribonuclease RusA	N/A
eggNOG-mapper	UHGV-0090169_7	1120985.AUMI01000019_gene2247	124.0	1.23e-34	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	N/A
COG	UHGV-0090169_7	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0090169_7	PF19595,NF007305,COG4570	N/A	N/A	N/A	N/A
KOfam	UHGV-0090169_8	K03111	141.2	1.10002e-41	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0090169_8	phrog_44	132.8	2.7e-39	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0090169_8	UniRef90_R6E0A2	191.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0090169_8	1120998.AUFC01000019_gene325	167.0	0	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-0090169_8	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0090169_8	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0090169_8	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0090169_8	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0090169_8	PF00436,MF_00984,NF005580,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0090169_9	phrog_7566	100.2	1.1e-29	N/A	unknown function
eggNOG-mapper	UHGV-0090169_9	1118057.CAGX01000020_gene1648	77.0	2.25e-17	N/A	N/A
PHROG	UHGV-0090169_10	phrog_1389	68.0	1.4e-19	N/A	unknown function
eggNOG-mapper	UHGV-0090169_10	883156.HMPREF9282_01223	74.3	8.51e-16	N/A	N/A
structural_annotation	UHGV-0090169_10	PF11056,TIGR04376,COG1842	N/A	N/A	N/A	N/A
PHROG	UHGV-0090169_11	phrog_434	108.5	4.9e-32	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0090169_11	UniRef90_UPI001CF8591D	298.0	0	YqaJ viral recombinase family protein	N/A
eggNOG-mapper	UHGV-0090169_11	1122146.AUHP01000010_gene1042	197.0	0	YqaJ viral recombinase family	N/A
Pfam	UHGV-0090169_11	PF09588	N/A	N/A	YqaJ-like viral recombinase domain	YqaJ
COG	UHGV-0090169_11	COG5377	N/A	N/A	Phage-related protein, predicted endonuclease	N/A
structural_annotation	UHGV-0090169_11	PF10926,MF_03030,TIGR03033,COG5377	N/A	N/A	N/A	N/A
PHROG	UHGV-0090169_12	phrog_7838	141.9	4.90034e-42	exonuclease	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0090169_12	742767.HMPREF9456_02397	191.0	0	N/A	N/A
structural_annotation	UHGV-0090169_12	PF04098,TIGR00607,COG4380	N/A	N/A	N/A	N/A
PHROG	UHGV-0090169_14	phrog_2113	47.8	0.00000000000015	N/A	unknown function
Pfam	UHGV-0090169_14	PF08279	N/A	N/A	HTH domain	HTH_11
PHROG	UHGV-0090169_15	phrog_22529	124.8	3.6e-37	N/A	unknown function
UniRef90	UHGV-0090169_15	UniRef90_R6EKT9	159.0	0	3D domain-containing protein	N/A
eggNOG-mapper	UHGV-0090169_15	877420.ATVW01000029_gene1358	99.0	8.96e-22	3D domain	N/A
Pfam	UHGV-0090169_15	PF06725	N/A	N/A	3D domain	3D
COG	UHGV-0090169_15	COG3584	N/A	N/A	3D (Asp-Asp-Asp) domain, usually in lytic transglycosylases	N/A
structural_annotation	UHGV-0090169_15	PF06725,MF_02071,NF040677,COG3584	N/A	N/A	N/A	N/A
KOfam	UHGV-0090169_17	K23779	46.7	0.00000000000074	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	N/A
PHROG	UHGV-0090169_17	phrog_8	54.2	0.0000000000000039	transcriptional regulator	transcription regulation
UniRef90	UHGV-0090169_17	UniRef90_A0A8G0M6K7	67.8	0.000000000000133	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0090169_17	12417.Q9T1J3_9CAUD	55.8	0.00000000296	sequence-specific DNA binding	N/A
Pfam	UHGV-0090169_17	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0090169_17	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0090169_18	PF21441,TIGR04176,COG1846	N/A	N/A	N/A	N/A
PHROG	UHGV-0090169_19	phrog_8	60.5	4e-17	transcriptional regulator	transcription regulation
UniRef90	UHGV-0090169_19	UniRef90_UPI001915FD06	82.4	7.3e-18	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0090169_19	1260356.D920_01819	59.7	0.000000000588	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0090169_19	PF12844	N/A	N/A	Helix-turn-helix domain	HTH_19
COG	UHGV-0090169_19	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0090169_19	PF12844,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-0090169_20	phrog_20936	45.1	0.0000000000018	N/A	unknown function
UniRef90	UHGV-0090169_20	UniRef90_UPI00164BB8FD	52.8	0.000000156	ImmA/IrrE family metallo-endopeptidase	N/A
Pfam	UHGV-0090169_20	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
structural_annotation	UHGV-0090169_20	PF06114	N/A	N/A	N/A	N/A
KOfam	UHGV-0090169_21	K06882	48.3	0.00000000000012	N/A	N/A
PHROG	UHGV-0090169_21	phrog_14556	40.2	0.000000000036	N/A	unknown function
eggNOG-mapper	UHGV-0090169_21	1235802.C823_02972	68.6	0.00000000000768	competence protein COMEC	N/A
COG	UHGV-0090169_21	COG2333	N/A	N/A	DNA uptake channel protein ComEC C-terminal domain, metallo-beta-lactamase superfamily	N/A
KOfam	UHGV-0090169_22	K06400	226.3	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0090169_22	phrog_95	247.7	0	integrase	integration and excision
UniRef90	UHGV-0090169_22	UniRef90_A0A1C6CR25	395.0	0	Recombinase	N/A
eggNOG-mapper	UHGV-0090169_22	483218.BACPEC_01184	327.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-0090169_22	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0090169_22	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-0090169_22	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-0090169_22	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0090169_22	PF07508,PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0090169_24	PF18573,NF033147	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0090169_25	641112.ACOK01000103_gene525	95.1	1.82e-21	N/A	N/A
PHROG	UHGV-0090169_27	phrog_21718	54.1	0.0000000000000021	N/A	unknown function
eggNOG-mapper	UHGV-0090169_27	476272.RUMHYD_01768	52.8	0.000000296	N/A	N/A
UniRef90	UHGV-0090169_28	UniRef90_A0A843HPX3	87.8	1.55e-21	Sigma-70 family RNA polymerase sigma factor	N/A
eggNOG-mapper	UHGV-0090169_28	1235790.C805_00057	51.2	0.0000000789	N/A	N/A
structural_annotation	UHGV-0090169_28	PF13404,TIGR01636	N/A	N/A	N/A	N/A
PHROG	UHGV-0090169_29	phrog_6918	50.9	0.000000000000024	holin	lysis
Pfam	UHGV-0090169_29	PF09682	N/A	N/A	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
structural_annotation	UHGV-0090169_29	PF09682,TIGR01673	N/A	N/A	N/A	N/A
UniRef90	UHGV-0090169_32	UniRef90_A0A7X6X882	165.0	0	CHAP domain-containing protein	N/A
eggNOG-mapper	UHGV-0090169_32	552396.HMPREF0863_01358	119.0	1.79e-28	CHAP domain	N/A
Pfam	UHGV-0090169_32	PF05257	N/A	N/A	CHAP domain	CHAP
COG	UHGV-0090169_32	COG3942	N/A	N/A	Surface antigen	N/A
structural_annotation	UHGV-0090169_32	COG3942	N/A	N/A	N/A	N/A
PHROG	UHGV-0090169_33	phrog_9854	117.6	7.6e-35	N/A	unknown function
UniRef90	UHGV-0090169_33	UniRef90_A0A1H2SFG5	240.0	0	LPD38 domain-containing protein	N/A
eggNOG-mapper	UHGV-0090169_33	1121091.AUMP01000003_gene2597	261.0	0	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis	N/A
Pfam	UHGV-0090169_33	PF18798	N/A	N/A	Large polyvalent protein-associated domain 3	LPD3
Pfam	UHGV-0090169_33	PF18857	N/A	N/A	Large polyvalent protein associated domain 38	LPD38
COG	UHGV-0090169_33	COG0503	N/A	N/A	Adenine/guanine phosphoribosyltransferase or related PRPP-binding protein	N/A
structural_annotation	UHGV-0090169_33	PF18857,PF18798	N/A	N/A	N/A	N/A
Pfam	UHGV-0090169_34	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
structural_annotation	UHGV-0090169_34	TIGR02559	N/A	N/A	N/A	N/A
PHROG	UHGV-0090169_39	phrog_3287	85.0	5.6e-25	virion structural protein	head and packaging
eggNOG-mapper	UHGV-0090169_39	1408437.JNJN01000002_gene1390	244.0	0	N/A	N/A
structural_annotation	UHGV-0090169_39	PF11134,MF_01282,TIGR03300,COG5276	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0090169_41	PF07100,COG4288	N/A	N/A	N/A	N/A
PHROG	UHGV-0090169_42	phrog_267	82.3	5.4e-24	major head protein	head and packaging
UniRef90	UHGV-0090169_42	UniRef90_A0A7C6CNA9	158.0	2.01787e-43	P22 coat protein-protein 5 domain protein	N/A
eggNOG-mapper	UHGV-0090169_42	665956.HMPREF1032_03906	315.0	0	P22 coat protein-protein 5 domain protein	N/A
structural_annotation	UHGV-0090169_42	PF19821,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0090169_44	phrog_156	75.9	1.1e-22	portal protein	head and packaging
eggNOG-mapper	UHGV-0090169_44	1232449.BAHV02000016_gene1822	408.0	0	N/A	N/A
structural_annotation	UHGV-0090169_44	PF16510,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0090169_46	phrog_38	350.0	0	terminase large subunit	head and packaging
UniRef90	UHGV-0090169_46	UniRef90_A0A845QMQ7	669.0	0	Terminase	N/A
eggNOG-mapper	UHGV-0090169_46	755731.Clo1100_2438	454.0	0	TIGRFAM Phage	N/A
Pfam	UHGV-0090169_46	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
Pfam	UHGV-0090169_46	PF17289	N/A	N/A	Terminase RNaseH-like domain	Terminase_6C
NCBIFam	UHGV-0090169_46	TIGR01630.1	N/A	N/A	phage terminase large subunit	N/A
COG	UHGV-0090169_46	COG5362	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0090169_46	PF17289,PF05876,MF_04147,NF033889,COG5362,COG5410	N/A	N/A	N/A	N/A
PHROG	UHGV-0090169_48	phrog_3377	129.1	2.4e-38	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0090169_48	UniRef90_G9B1F6	120.0	8.86e-31	Gp55	N/A
eggNOG-mapper	UHGV-0090169_48	764595.G9B1F6_9CAUD	120.0	1.49e-31	sequence-specific DNA binding transcription factor activity	N/A
UniRef90	UHGV-0090169_49	UniRef90_A0A316R7E8	47.8	0.00000826	RHH_1 domain-containing protein	N/A
structural_annotation	UHGV-0090169_49	PF10723,NF040976,COG4710	N/A	N/A	N/A	N/A
PHROG	UHGV-0090169_50	phrog_15863	135.3	3e-40	N/A	unknown function
UniRef90	UHGV-0090169_50	UniRef90_A0A644WI33	150.0	2.9147e-43	J domain-containing protein	N/A
eggNOG-mapper	UHGV-0090169_50	693746.OBV_01780	149.0	7.9874e-44	DnaJ molecular chaperone homology domain	N/A
COG	UHGV-0090169_50	COG2214	N/A	N/A	Curved DNA-binding protein CbpA, contains a DnaJ-like domain	N/A
structural_annotation	UHGV-0090169_53	PF05263,TIGR01636	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0090169_54	PF18066	N/A	N/A	N/A	N/A
PHROG	UHGV-0090169_56	phrog_25385	65.4	9.1e-19	N/A	unknown function
eggNOG-mapper	UHGV-0090169_56	718252.FP2_16450	58.2	0.00000000183	N/A	N/A
PHROG	UHGV-0090169_57	phrog_1485	91.4	1.2e-26	N/A	unknown function
UniRef90	UHGV-0090169_57	UniRef90_A0A3S8RPB6	114.0	1.42e-30	N/A	N/A
eggNOG-mapper	UHGV-0090169_57	1444310.JANV01000096_gene3245	82.4	4.9e-18	N/A	N/A
Pfam	UHGV-0090169_57	PF07659	N/A	N/A	Nucleotide modification associated domain 1	DUF1599
structural_annotation	UHGV-0090169_57	PF07659	N/A	N/A	N/A	N/A
PHROG	UHGV-0090169_58	phrog_10714	68.7	8.3e-20	N/A	unknown function
UniRef90	UHGV-0090169_58	UniRef90_R5R2P7	71.2	0.0000000000000504	DNA polymerase II large subunit	N/A
eggNOG-mapper	UHGV-0090169_58	428127.EUBDOL_01238	96.3	9.45e-25	N/A	N/A
PHROG	UHGV-0090169_60	phrog_2118	108.5	7.2e-32	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0090169_60	UniRef90_G4KQ95	140.0	6.18996e-41	HNHc domain-containing protein	N/A
eggNOG-mapper	UHGV-0090169_60	693746.OBV_25310	140.0	1.04004e-41	HNH endonuclease	N/A
Pfam	UHGV-0090169_60	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0090169_60	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-0090169_60	TIGR02646,COG1403	N/A	N/A	N/A	N/A
PHROG	UHGV-0090169_63	phrog_21026	53.4	0.0000000000000032	N/A	unknown function
structural_annotation	UHGV-0090169_65	PF09889,MF_00649	N/A	N/A	N/A	N/A
PHROG	UHGV-0090169_67	phrog_14105	127.9	7.2e-38	N/A	unknown function
UniRef90	UHGV-0090169_67	UniRef90_UPI001E51E034	85.1	4.12e-18	pentapeptide repeat-containing protein	N/A
eggNOG-mapper	UHGV-0090169_67	97138.C820_00368	80.1	0.00000000000000136	PPE family	N/A
Pfam	UHGV-0090169_67	PF01469	N/A	N/A	Pentapeptide repeats (8 copies)	Pentapeptide_2
COG	UHGV-0090169_67	COG5651	N/A	N/A	PPE-repeat protein	N/A
structural_annotation	UHGV-0090169_67	PF01469	N/A	N/A	N/A	N/A