UHGV-0090196 (vOTU-062177)

Viral Genome: UHGV-0090196

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0090196
vOTU ID	vOTU-062177
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_199028
Associated BioSample	SAMEA3449295
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.9 (High-quality)
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9725
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	24.42
Jumbo phage	No

Genome content
Genome length (bp)	39,450
GC content	59.14%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	63
CDS density	93%
Average CDS length (bps)	580.38
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
eggNOG-mapper	UHGV-0090196_1	1378168.N510_03079	88.2	9.77e-19	N/A	N/A
eggNOG-mapper	UHGV-0090196_2	1408437.JNJN01000043_gene802	150.0	4.2039e-45	N/A	N/A
PHROG	UHGV-0090196_3	phrog_16490	207.2	0	N/A	unknown function
eggNOG-mapper	UHGV-0090196_3	1408437.JNJN01000043_gene803	203.0	0	N/A	N/A
eggNOG-mapper	UHGV-0090196_5	1408437.JNJN01000043_gene805	59.3	0.00000000123	N/A	N/A
structural_annotation	UHGV-0090196_7	PF09682,TIGR01673	N/A	N/A	N/A	N/A
PHROG	UHGV-0090196_8	phrog_937	64.2	2.1e-18	hemolysin	other
eggNOG-mapper	UHGV-0090196_8	1519439.JPJG01000023_gene533	87.8	2.35e-21	N/A	N/A
PHROG	UHGV-0090196_9	phrog_1493	57.4	3.2e-16	endolysin	lysis
UniRef90	UHGV-0090196_9	UniRef90_A0A1C6GMR6	189.0	0	NlpC/P60 family	N/A
eggNOG-mapper	UHGV-0090196_9	871963.Desdi_1346	118.0	2.31e-28	NLP P60 protein	N/A
Pfam	UHGV-0090196_9	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-0090196_9	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A
structural_annotation	UHGV-0090196_9	PF01471,PF00877,NF033742,NF038080,COG0791	N/A	N/A	N/A	N/A
PHROG	UHGV-0090196_13	phrog_24267	80.4	2e-23	N/A	unknown function
eggNOG-mapper	UHGV-0090196_13	742742.HMPREF9452_00376	115.0	5.38e-28	tail collar domain protein	N/A
COG	UHGV-0090196_13	COG4675	N/A	N/A	Phage tail collar domain	N/A
structural_annotation	UHGV-0090196_13	PF14594,TIGR01665,COG4379	N/A	N/A	N/A	N/A
PHROG	UHGV-0090196_14	phrog_13564	47.9	0.00000000000013	minor tail protein	tail
structural_annotation	UHGV-0090196_14	PF16774,PF20753,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0090196_15	phrog_13339	373.9	0	tail length tape measure protein	tail
eggNOG-mapper	UHGV-0090196_15	1408437.JNJN01000030_gene1055	268.0	0	Phage-related minor tail protein	N/A
Pfam	UHGV-0090196_15	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-0090196_15	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-0090196_15	COG5283	N/A	N/A	Phage-related tail protein	N/A
structural_annotation	UHGV-0090196_17	PF11836	N/A	N/A	N/A	N/A
PHROG	UHGV-0090196_18	phrog_88	94.9	7.3e-28	major tail protein	tail
UniRef90	UHGV-0090196_18	UniRef90_UPI0018771F27	297.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-0090196_18	349161.Dred_2600	90.1	3.01e-19	N/A	N/A
NCBIFam	UHGV-0090196_18	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-0090196_18	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-0090196_19	phrog_5	41.2	0.000000000028	tail completion or Neck1 protein	connector
UniRef90	UHGV-0090196_19	UniRef90_A0A1C6FG30	138.0	1.01e-38	Phage protein, HK97 gp10 family	N/A
eggNOG-mapper	UHGV-0090196_19	908340.HMPREF9406_2573	100.0	1.21e-24	N/A	N/A
structural_annotation	UHGV-0090196_19	TIGR01725	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0090196_20	1235798.C817_04588	89.0	1.34e-21	N/A	N/A
structural_annotation	UHGV-0090196_20	PF05657,COG3167	N/A	N/A	N/A	N/A
PHROG	UHGV-0090196_21	phrog_19734	109.4	2.6e-32	N/A	unknown function
UniRef90	UHGV-0090196_21	UniRef90_A0A6I7GNS7	114.0	2.53e-30	Phage head closure protein	N/A
eggNOG-mapper	UHGV-0090196_21	349161.Dred_2602	72.4	0.00000000000000961	N/A	N/A
structural_annotation	UHGV-0090196_21	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0090196_22	phrog_749	67.5	1.8e-19	N/A	unknown function
UniRef90	UHGV-0090196_22	UniRef90_UPI001C0F1EE0	71.2	0.0000000000000444	head-tail connector protein	N/A
eggNOG-mapper	UHGV-0090196_22	349161.Dred_2603	101.0	8.57e-27	N/A	N/A
PHROG	UHGV-0090196_23	phrog_10	141.6	8.29989e-42	major head protein	head and packaging
UniRef90	UHGV-0090196_23	UniRef90_G9YSC0	548.0	0	Cadherin-like domain-containing protein	N/A
eggNOG-mapper	UHGV-0090196_23	1235792.C808_00086	406.0	0	Phage capsid family	N/A
Pfam	UHGV-0090196_23	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
Pfam	UHGV-0090196_23	PF12733	N/A	N/A	Cadherin-like beta sandwich domain	Cadherin-like
NCBIFam	UHGV-0090196_23	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0090196_23	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0090196_23	PF05065,PF12733,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-0090196_24	K01358	118.9	5.9e-35	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0090196_24	phrog_94	185.5	0	head maturation protease	head and packaging
UniRef90	UHGV-0090196_24	UniRef90_UPI00111E41DA	163.0	0	Clp protease ClpP	N/A
eggNOG-mapper	UHGV-0090196_24	1384484.AEQU_1181	130.0	2.01e-34	Clp protease	N/A
Pfam	UHGV-0090196_24	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0090196_24	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-0090196_24	PF00574,MF_00444,TIGR00493,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-0090196_25	phrog_12	108.0	7.3e-32	portal protein	head and packaging
UniRef90	UHGV-0090196_25	UniRef90_UPI0018755FA4	449.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0090196_25	349161.Dred_2606	280.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-0090196_25	PF04860	N/A	N/A	Phage portal protein	Phage_portal
COG	UHGV-0090196_25	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0090196_25	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-0090196_26	phrog_9	227.7	0	terminase large subunit	head and packaging
UniRef90	UHGV-0090196_26	UniRef90_UPI0018737C02	805.0	0	terminase large subunit	N/A
eggNOG-mapper	UHGV-0090196_26	610130.Closa_0741	581.0	0	Phage Terminase	N/A
Pfam	UHGV-0090196_26	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0090196_26	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0090196_26	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0090196_27	phrog_5110	57.6	1.8e-16	terminase small subunit	head and packaging
UniRef90	UHGV-0090196_27	UniRef90_UPI001874172A	113.0	5.03e-30	P27 family phage terminase small subunit	N/A
Pfam	UHGV-0090196_27	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
COG	UHGV-0090196_27	COG5484	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0090196_27	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
KOfam	UHGV-0090196_30	K00571	198.9	0	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-0090196_30	phrog_67	195.0	0	DNA methyltransferase	other
UniRef90	UHGV-0090196_30	UniRef90_UPI00055C7461	347.0	0	site-specific DNA-methyltransferase	N/A
eggNOG-mapper	UHGV-0090196_30	371042.NG99_23680	135.0	5.03e-34	DNA methylase	N/A
PADLOC	UHGV-0090196_30	MTase_II_00051	156.5	0	Type II methyltransferase	RM
Pfam	UHGV-0090196_30	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-0090196_30	COG2189	N/A	N/A	Adenine specific DNA methylase Mod	N/A
structural_annotation	UHGV-0090196_30	PF01555,MF_01872,NF008572,COG0863	N/A	N/A	N/A	N/A
PHROG	UHGV-0090196_31	phrog_119	67.8	1.5e-19	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0090196_31	UniRef90_UPI001958184D	153.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0090196_31	926561.KB900623_gene763	75.1	6.3e-16	HNH nucleases	N/A
COG	UHGV-0090196_31	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-0090196_33	phrog_36	46.9	0.00000000000057	transcriptional regulator	transcription regulation
eggNOG-mapper	UHGV-0090196_33	1134413.ANNK01000120_gene2036	60.1	0.0000000017	N/A	N/A
Pfam	UHGV-0090196_33	PF07638	N/A	N/A	ECF sigma factor	Sigma70_ECF
NCBIFam	UHGV-0090196_33	TIGR01636.1	N/A	N/A	phage transcriptional regulator, RinA family	N/A
structural_annotation	UHGV-0090196_33	PF05263,TIGR01636,COG1595	N/A	N/A	N/A	N/A
PHROG	UHGV-0090196_35	phrog_3584	116.6	2.3e-34	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0090196_35	537013.CLOSTMETH_02141	74.7	0.000000000000112	N/A	N/A
structural_annotation	UHGV-0090196_35	PF21578,MF_00360	N/A	N/A	N/A	N/A
PHROG	UHGV-0090196_37	phrog_24518	82.6	4.6e-24	N/A	unknown function
eggNOG-mapper	UHGV-0090196_37	1519439.JPJG01000077_gene922	108.0	1.88e-26	N/A	N/A
PHROG	UHGV-0090196_39	phrog_15609	247.1	0	N/A	unknown function
UniRef90	UHGV-0090196_39	UniRef90_A0A7G9WGA3	146.0	2.57e-37	N/A	N/A
eggNOG-mapper	UHGV-0090196_39	1123288.SOV_1c10530	125.0	1.46e-30	N/A	N/A
Pfam	UHGV-0090196_39	PF11300	N/A	N/A	N/A	DUF3102
COG	UHGV-0090196_39	COG2433	N/A	N/A	Possible nuclease of RNase H fold, RuvC/YqgF family	N/A
structural_annotation	UHGV-0090196_39	PF11300,PF07321,NF038070	N/A	N/A	N/A	N/A
PHROG	UHGV-0090196_40	phrog_8470	244.8	0	N/A	unknown function
UniRef90	UHGV-0090196_40	UniRef90_UPI00195E492B	244.0	0	PcfJ domain-containing protein	N/A
eggNOG-mapper	UHGV-0090196_40	693746.OBV_24010	209.0	0	PcfJ-like protein	N/A
Pfam	UHGV-0090196_40	PF14284	N/A	N/A	PcfJ-like protein	PcfJ
structural_annotation	UHGV-0090196_40	PF14284	N/A	N/A	N/A	N/A
PHROG	UHGV-0090196_41	phrog_38338	73.4	3.6e-21	N/A	unknown function
eggNOG-mapper	UHGV-0090196_41	693746.OBV_25410	95.5	8.93e-24	N/A	N/A
eggNOG-mapper	UHGV-0090196_45	1378168.N510_02487	130.0	1.42e-35	N/A	N/A
UniRef90	UHGV-0090196_50	UniRef90_A0A354UTE4	105.0	1.35e-26	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0090196_50	1095750.HMPREF9970_1686	74.3	0.00000000000000331	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0090196_50	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0090196_50	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0090196_50	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0090196_51	K02342	158.9	0	dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]	N/A
PHROG	UHGV-0090196_51	phrog_192	147.4	4.90454e-44	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0090196_51	UniRef90_R5B344	140.0	3.57e-34	Exonuclease	N/A
eggNOG-mapper	UHGV-0090196_51	1203606.HMPREF1526_00999	117.0	3.11e-27	EXOIII	N/A
PADLOC	UHGV-0090196_51	cd06127	126.7	1.1e-37	CAS-I,CAS-II,CAS-III,CAS-IV,CAS-V,CAS-VI; associated	CRISPR-CAS
Pfam	UHGV-0090196_51	PF00929	N/A	N/A	Exonuclease	RNase_T
NCBIFam	UHGV-0090196_51	TIGR00573.1	N/A	N/A	exonuclease, DNA polymerase III, epsilon subunit family	N/A
COG	UHGV-0090196_51	COG2176	N/A	N/A	DNA polymerase III, alpha subunit (gram-positive type)	N/A
PHROG	UHGV-0090196_53	phrog_353	68.1	9.5e-20	toxin	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0090196_53	UniRef90_A0A3E3K2T1	120.0	2.2e-34	Type II toxin-antitoxin system HicA family toxin	N/A
eggNOG-mapper	UHGV-0090196_53	502558.EGYY_24930	107.0	4.02e-30	HicA toxin of bacterial toxin-antitoxin,	N/A
Pfam	UHGV-0090196_53	PF07927	N/A	N/A	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
COG	UHGV-0090196_53	COG1724	N/A	N/A	Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family	N/A
structural_annotation	UHGV-0090196_53	PF07927,COG1724	N/A	N/A	N/A	N/A
PHROG	UHGV-0090196_54	phrog_497	68.7	1.2e-19	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0090196_54	UniRef90_R9J2N5	201.0	0	HicB-like domain-containing protein	N/A
eggNOG-mapper	UHGV-0090196_54	397287.C807_03671	201.0	0	Toxin-antitoxin system, antitoxin component, HicB family	N/A
Pfam	UHGV-0090196_54	PF15919	N/A	N/A	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
COG	UHGV-0090196_54	COG1598	N/A	N/A	Antitoxin component HicB of the HicAB toxin-antitoxin system	N/A
structural_annotation	UHGV-0090196_54	PF15919,COG1598	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0090196_57	1341157.RF007C_15645	53.1	0.00000271	N/A	N/A
structural_annotation	UHGV-0090196_57	PF13560,TIGR03070,COG3655	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0090196_59	469378.Ccur_02570	65.9	0.000000000000122	N/A	N/A
eggNOG-mapper	UHGV-0090196_60	742738.HMPREF9460_00886	81.3	4.67e-16	N/A	N/A
KOfam	UHGV-0090196_61	K06400	349.3	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0090196_61	phrog_95	331.1	0	integrase	integration and excision
UniRef90	UHGV-0090196_61	UniRef90_UPI00106696FE	363.0	0	recombinase family protein	N/A
eggNOG-mapper	UHGV-0090196_61	665956.HMPREF1032_03589	361.0	0	N/A	N/A
Pfam	UHGV-0090196_61	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0090196_61	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-0090196_61	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-0090196_61	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0090196_61	PF07508,PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0090196_62	428125.CLOLEP_03247	75.9	1.07e-17	N/A	N/A
eggNOG-mapper	UHGV-0090196_63	718252.FP2_05390	59.3	0.000000465	COG COG4886 Leucine-rich repeat (LRR) protein	N/A