UHGV-0090291 (vOTU-014137)

Viral Genome: UHGV-0090291

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0090291
vOTU ID	vOTU-014137
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_168611
Associated BioSample	SAMEA3136736
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.9 (High-quality)
Trimmed provirus	Yes
CheckV viral markers	22
CheckV host markers	8
Recoded stop codon	No

Viral Content
geNomad score	0.9735
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	26.52
Jumbo phage	No

Genome content
Genome length (bp)	43,119
GC content	43.84%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	61
CDS density	90%
Average CDS length (bps)	639.05
Total tRNA genes	1
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0090291_1	K01447	116.4	3.6e-34	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0090291_1	phrog_1794	187.5	0	amidase	lysis
UniRef90	UHGV-0090291_1	UniRef90_A0A173WJQ4	352.0	0	N-acetylmuramoyl-L-alanine amidase CwlH	N/A
eggNOG-mapper	UHGV-0090291_1	457412.RSAG_02159	247.0	0	N-Acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-0090291_1	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
COG	UHGV-0090291_1	COG5632	N/A	N/A	N-acetylmuramoyl-L-alanine amidase CwlA	N/A
structural_annotation	UHGV-0090291_1	PF01510,PF18342,MF_04111,NF008758,COG5632	N/A	N/A	N/A	N/A
PHROG	UHGV-0090291_2	phrog_199	72.1	6.6e-21	holin	lysis
UniRef90	UHGV-0090291_2	UniRef90_A0A417CRV5	278.0	0	Holin	N/A
eggNOG-mapper	UHGV-0090291_2	411460.RUMTOR_02100	222.0	0	N/A	N/A
Pfam	UHGV-0090291_2	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-0090291_2	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
structural_annotation	UHGV-0090291_2	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0090291_3	457412.RSAG_04673	69.3	0.00000000000000249	N/A	N/A
PHROG	UHGV-0090291_6	phrog_19280	92.7	3.3e-27	N/A	unknown function
UniRef90	UHGV-0090291_6	UniRef90_A0A413UF00	417.0	0	N/A	N/A
eggNOG-mapper	UHGV-0090291_6	1160721.RBI_I01569	131.0	4.21e-31	N/A	N/A
Pfam	UHGV-0090291_6	PF19789	N/A	N/A	N/A	DUF6273
structural_annotation	UHGV-0090291_6	PF19789	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0090291_7	457412.RSAG_01112	85.9	0.00000000000000167	N/A	N/A
PHROG	UHGV-0090291_8	phrog_16164	206.6	0	N/A	unknown function
eggNOG-mapper	UHGV-0090291_8	457412.RSAG_01113	79.0	0.00000000000000917	N/A	N/A
structural_annotation	UHGV-0090291_8	PF10651,NF032891	N/A	N/A	N/A	N/A
PHROG	UHGV-0090291_9	phrog_6616	120.8	1e-35	tail protein	tail
UniRef90	UHGV-0090291_9	UniRef90_A0A1C5VLA0	661.0	0	Collagen triple helix repeat (20 copies)	N/A
eggNOG-mapper	UHGV-0090291_9	1232453.BAIF02000058_gene1641	461.0	0	Phage minor structural protein	N/A
COG	UHGV-0090291_9	COG4926	N/A	N/A	Phage-related protein	N/A
PHROG	UHGV-0090291_10	phrog_1401	72.0	8.3e-21	N/A	unknown function
UniRef90	UHGV-0090291_10	UniRef90_A0A7C6P910	81.3	2.9e-17	N/A	N/A
eggNOG-mapper	UHGV-0090291_10	1232453.BAIF02000058_gene1640	99.0	4.09e-25	N/A	N/A
structural_annotation	UHGV-0090291_10	PF07761	N/A	N/A	N/A	N/A
PHROG	UHGV-0090291_11	phrog_2566	68.6	8e-20	N/A	unknown function
eggNOG-mapper	UHGV-0090291_11	1232453.BAIF02000058_gene1639	69.7	0.00000000000000828	N/A	N/A
PHROG	UHGV-0090291_12	phrog_1194	67.6	1.9e-19	N/A	unknown function
eggNOG-mapper	UHGV-0090291_12	33035.JPJF01000093_gene2242	151.0	0	N/A	N/A
structural_annotation	UHGV-0090291_12	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0090291_13	phrog_1535	289.5	0	tail length tape measure protein	tail
UniRef90	UHGV-0090291_13	UniRef90_A0A1C5PIN9	929.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0090291_13	33035.JPJF01000093_gene2243	555.0	0	phage tail tape measure protein	N/A
COG	UHGV-0090291_13	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-0090291_13	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-0090291_15	phrog_8355	109.7	8.7e-33	N/A	unknown function
UniRef90	UHGV-0090291_15	UniRef90_UPI001C031F13	115.0	7.84e-32	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-0090291_15	33035.JPJF01000093_gene2244	109.0	1.47e-30	N/A	N/A
PHROG	UHGV-0090291_16	phrog_8300	93.8	1.3e-27	N/A	unknown function
eggNOG-mapper	UHGV-0090291_16	33035.JPJF01000093_gene2245	95.9	1.4e-24	N/A	N/A
structural_annotation	UHGV-0090291_16	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0090291_17	phrog_820	126.2	1.7e-37	major tail protein	tail
eggNOG-mapper	UHGV-0090291_17	1282664.H354_06691	222.0	0	N/A	N/A
structural_annotation	UHGV-0090291_17	PF06199,TIGR02241,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0090291_18	phrog_2595	81.6	9.2e-24	head-tail connector protein	connector
UniRef90	UHGV-0090291_18	UniRef90_UPI001C00BA9C	183.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-0090291_18	585501.HMPREF6123_0830	92.8	2.29e-22	N/A	N/A
Pfam	UHGV-0090291_18	PF12691	N/A	N/A	Bacteriophage minor capsid protein	Minor_capsid_3
structural_annotation	UHGV-0090291_18	PF12691,COG5003	N/A	N/A	N/A	N/A
PHROG	UHGV-0090291_19	phrog_556	61.7	1.2e-17	minor head protein	head and packaging
eggNOG-mapper	UHGV-0090291_19	742740.HMPREF9474_03509	187.0	0	N/A	N/A
PHROG	UHGV-0090291_20	phrog_8710	137.9	2.89999e-41	N/A	unknown function
eggNOG-mapper	UHGV-0090291_20	1304866.K413DRAFT_0782	150.0	1.4013e-45	N/A	N/A
structural_annotation	UHGV-0090291_20	PF10665,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0090291_21	phrog_541	84.8	9.1e-25	head-tail adaptor	connector
eggNOG-mapper	UHGV-0090291_21	742740.HMPREF9474_03507	199.0	0	N/A	N/A
PHROG	UHGV-0090291_22	phrog_1378	83.4	2e-24	N/A	unknown function
eggNOG-mapper	UHGV-0090291_22	1280692.AUJL01000027_gene2159	77.0	1.17e-17	N/A	N/A
PHROG	UHGV-0090291_23	phrog_422	334.1	0	major head protein	head and packaging
UniRef90	UHGV-0090291_23	UniRef90_UPI0009319B06	562.0	0	capsid protein	N/A
eggNOG-mapper	UHGV-0090291_23	33035.JPJF01000093_gene2252	487.0	0	N/A	N/A
structural_annotation	UHGV-0090291_23	PF19821,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0090291_24	phrog_2303	149.1	2.8026e-44	head scaffolding protein	head and packaging
eggNOG-mapper	UHGV-0090291_24	1304866.K413DRAFT_0806	196.0	0	N/A	N/A
PHROG	UHGV-0090291_27	phrog_478	115.1	3.3e-34	site-specific recombination directionality factor RDF	integration and excision
UniRef90	UHGV-0090291_27	UniRef90_R6R5K5	142.0	2.45998e-41	Protein 64 protein	N/A
eggNOG-mapper	UHGV-0090291_27	1111121.HMPREF1247_0834	139.0	1.54e-40	N/A	N/A
PHROG	UHGV-0090291_28	phrog_918	127.4	3.5e-38	N/A	unknown function
UniRef90	UHGV-0090291_28	UniRef90_UPI000E468F85	133.0	7.05e-39	N/A	N/A
eggNOG-mapper	UHGV-0090291_28	298338.Q5ULN6_9CAUD	125.0	3.4e-36	N/A	N/A
Pfam	UHGV-0090291_28	PF19791	N/A	N/A	N/A	DUF6275
structural_annotation	UHGV-0090291_28	PF19791	N/A	N/A	N/A	N/A
PHROG	UHGV-0090291_29	phrog_1048	176.1	0	N/A	unknown function
UniRef90	UHGV-0090291_29	UniRef90_UPI001D0240A6	311.0	0	N/A	N/A
eggNOG-mapper	UHGV-0090291_29	457412.RSAG_01107	301.0	0	N/A	N/A
Pfam	UHGV-0090291_29	PF11195	N/A	N/A	N/A	DUF2829
dbAPIS	UHGV-0090291_29	APIS029	N/A	N/A	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	N/A
structural_annotation	UHGV-0090291_29	PF11195	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0090291_30	PF11344	N/A	N/A	N/A	N/A
PHROG	UHGV-0090291_31	phrog_581	248.3	0	minor head protein	head and packaging
UniRef90	UHGV-0090291_31	UniRef90_A0A1C5PIA8	771.0	0	Phage minor capsid protein 2	N/A
eggNOG-mapper	UHGV-0090291_31	33035.JPJF01000093_gene2255	497.0	0	N/A	N/A
Pfam	UHGV-0090291_31	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0090291_31	COG5585	N/A	N/A	Putative phage head morphogenesis protein, F of phage Mu or gp7 of SPP1	N/A
structural_annotation	UHGV-0090291_31	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-0090291_32	phrog_25639	107.4	5.5e-32	N/A	unknown function
eggNOG-mapper	UHGV-0090291_32	742740.HMPREF9474_03502	82.0	8.55e-20	N/A	N/A
PHROG	UHGV-0090291_33	phrog_533	309.0	0	portal protein	head and packaging
UniRef90	UHGV-0090291_33	UniRef90_UPI0009317C90	911.0	0	capsid protein	N/A
eggNOG-mapper	UHGV-0090291_33	742740.HMPREF9474_03501	723.0	0	N/A	N/A
structural_annotation	UHGV-0090291_33	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-0090291_34	K06909	93.7	2.8e-27	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0090291_34	phrog_2	72.9	6.6e-21	terminase large subunit	head and packaging
UniRef90	UHGV-0090291_34	UniRef90_A0A414SEW8	858.0	0	Terminase	N/A
eggNOG-mapper	UHGV-0090291_34	742740.HMPREF9474_03500	780.0	0	Phage terminase, large subunit, PBSX family	N/A
COG	UHGV-0090291_34	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0090291_34	PF03237,PF17289,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
KOfam	UHGV-0090291_35	K07474	163.5	0	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-0090291_35	phrog_51	153.5	1.4013e-45	terminase small subunit	head and packaging
UniRef90	UHGV-0090291_35	UniRef90_UPI000E43AB8F	269.0	0	terminase small subunit	N/A
eggNOG-mapper	UHGV-0090291_35	742740.HMPREF9474_03499	206.0	0	Terminase Small Subunit	N/A
Pfam	UHGV-0090291_35	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-0090291_35	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-0090291_35	PF03592,COG3728	N/A	N/A	N/A	N/A
PHROG	UHGV-0090291_36	phrog_36	60.7	3.3e-17	transcriptional regulator	transcription regulation
UniRef90	UHGV-0090291_36	UniRef90_A0A7G5MSQ2	165.0	0	RNA polymerase subunit sigma-70	N/A
eggNOG-mapper	UHGV-0090291_36	742740.HMPREF9474_03497	159.0	0	N/A	N/A
structural_annotation	UHGV-0090291_36	PF02996	N/A	N/A	N/A	N/A
PHROG	UHGV-0090291_38	phrog_924	41.9	0.00000000002	N/A	unknown function
UniRef90	UHGV-0090291_38	UniRef90_UPI001C00FD03	142.0	5.98999e-41	N/A	N/A
eggNOG-mapper	UHGV-0090291_38	1256908.HMPREF0373_00667	103.0	7.13e-27	N/A	N/A
Pfam	UHGV-0090291_38	PF04448	N/A	N/A	N/A	DUF551
eggNOG-mapper	UHGV-0090291_39	457412.RSAG_01159	341.0	0	N/A	N/A
PHROG	UHGV-0090291_41	phrog_954	219.3	0	DNA methyltransferase	other
UniRef90	UHGV-0090291_41	UniRef90_UPI00189C6FDE	315.0	0	methyltransferase	N/A
eggNOG-mapper	UHGV-0090291_41	1280698.AUJS01000007_gene1028	207.0	0	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA	N/A
PADLOC	UHGV-0090291_41	MTase_II_00074	213.5	0	Type II methyltransferase	RM
Pfam	UHGV-0090291_41	PF08241	N/A	N/A	Methyltransferase domain	Methyltransf_11
COG	UHGV-0090291_41	COG1092	N/A	N/A	23S rRNA G2069 N7-methylase RlmK or C1962 C5-methylase RlmI	N/A
structural_annotation	UHGV-0090291_41	PF05148,MF_03044,NF033398,COG1041	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0090291_43	1196322.A370_05726	52.4	0.000000092	N/A	N/A
PHROG	UHGV-0090291_44	phrog_15077	74.8	2e-23	N/A	unknown function
UniRef90	UHGV-0090291_44	UniRef90_A0A3A6HZA9	190.0	0	N/A	N/A
eggNOG-mapper	UHGV-0090291_44	1280698.AUJS01000007_gene1019	174.0	0	N/A	N/A
PHROG	UHGV-0090291_45	phrog_8470	216.5	0	N/A	unknown function
UniRef90	UHGV-0090291_45	UniRef90_UPI001158FAD9	412.0	0	PcfJ domain-containing protein	N/A
eggNOG-mapper	UHGV-0090291_45	1280698.AUJS01000007_gene1018	426.0	0	N/A	N/A
Pfam	UHGV-0090291_45	PF14284	N/A	N/A	PcfJ-like protein	PcfJ
structural_annotation	UHGV-0090291_45	PF14284	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0090291_46	1256908.HMPREF0373_03002	92.0	2.07e-20	N/A	N/A
structural_annotation	UHGV-0090291_46	PF12120,NF000318	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0090291_47	1280698.AUJS01000007_gene1016	127.0	4.21e-35	N/A	N/A
KOfam	UHGV-0090291_48	K03469	59.4	8.2e-17	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	N/A
PHROG	UHGV-0090291_48	phrog_531	49.5	0.000000000000081	Rnase H	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0090291_48	UniRef90_A0A417CPS0	143.0	1.07003e-41	RNase H type-1 domain-containing protein	N/A
eggNOG-mapper	UHGV-0090291_48	411459.RUMOBE_00952	123.0	2.01e-34	RNase H	N/A
Pfam	UHGV-0090291_48	PF00075	N/A	N/A	RNase H	RNase_H
COG	UHGV-0090291_48	COG0328	N/A	N/A	Ribonuclease HI	N/A
structural_annotation	UHGV-0090291_48	PF00075,MF_00042,NF001236,COG0328	N/A	N/A	N/A	N/A
PHROG	UHGV-0090291_49	phrog_3584	136.2	2.2e-40	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0090291_49	1280698.AUJS01000007_gene1013	286.0	0	N/A	N/A
structural_annotation	UHGV-0090291_49	PF01446	N/A	N/A	N/A	N/A
UniRef90	UHGV-0090291_52	UniRef90_UPI00129DCFE7	106.0	1.44e-27	HTH domain-containing protein	N/A
structural_annotation	UHGV-0090291_52	PF20063	N/A	N/A	N/A	N/A
PHROG	UHGV-0090291_54	phrog_2232	198.1	0	N/A	unknown function
UniRef90	UHGV-0090291_54	UniRef90_UPI00156E3693	412.0	0	N/A	N/A
eggNOG-mapper	UHGV-0090291_54	633697.EubceDRAFT1_1462	161.0	0	N/A	N/A
Pfam	UHGV-0090291_54	PF14337	N/A	N/A	Abortive infection alpha	Abi_alpha
structural_annotation	UHGV-0090291_54	PF14337,TIGR03899	N/A	N/A	N/A	N/A
KOfam	UHGV-0090291_57	K18830	73.0	4.9e-21	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-0090291_57	phrog_8	53.5	0.0000000000000054	transcriptional regulator	transcription regulation
UniRef90	UHGV-0090291_57	UniRef90_A0A1C6ITJ1	224.0	0	Antitoxin PezA	N/A
eggNOG-mapper	UHGV-0090291_57	1235797.C816_03553	104.0	1.16e-26	DNA-binding helix-turn-helix protein	N/A
Pfam	UHGV-0090291_57	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0090291_57	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0090291_57	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0090291_59	phrog_4431	76.4	4.7e-22	N/A	unknown function
UniRef90	UHGV-0090291_59	UniRef90_A0A412ELU3	226.0	0	SHOCT domain-containing protein	N/A
eggNOG-mapper	UHGV-0090291_59	1449343.JQLQ01000002_gene1561	76.3	0.000000000000158	N/A	N/A
Pfam	UHGV-0090291_59	PF09851	N/A	N/A	Short C-terminal domain	SHOCT
KOfam	UHGV-0090291_60	K14059	174.0	0	int; integrase	N/A
PHROG	UHGV-0090291_60	phrog_1	177.3	0	integrase	integration and excision
UniRef90	UHGV-0090291_60	UniRef90_UPI001D0153FD	722.0	0	site-specific integrase	N/A
eggNOG-mapper	UHGV-0090291_60	1280698.AUJS01000007_gene999	347.0	0	Phage integrase family	N/A
Pfam	UHGV-0090291_60	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0090291_60	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0090291_60	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
KOfam	UHGV-0090291_61	K01586	362.8	0	lysA; diaminopimelate decarboxylase [EC:4.1.1.20]	N/A
UniRef90	UHGV-0090291_61	UniRef90_A0A173WUP3	820.0	0	Diaminopimelate decarboxylase	N/A
eggNOG-mapper	UHGV-0090291_61	411459.RUMOBE_04004	820.0	0	N/A	N/A
Pfam	UHGV-0090291_61	PF02784	N/A	N/A	Pyridoxal-dependent decarboxylase, pyridoxal binding domain	Orn_Arg_deC_N
COG	UHGV-0090291_61	COG0019	N/A	N/A	Diaminopimelate decarboxylase	N/A
structural_annotation	UHGV-0090291_61	PF00278,MF_02120,TIGR01048,COG0019	N/A	N/A	N/A	N/A