UHGV-0090720 (vOTU-148829)

Viral Genome: UHGV-0090720

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0090720
vOTU ID	vOTU-148829
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_197173
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	57.63 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9765
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	47.05
Jumbo phage	No

Genome content
Genome length (bp)	22,245
GC content	38.52%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	36
CDS density	95%
Average CDS length (bps)	587.17
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 57.63)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0090720_1	phrog_155	48.1	0.00000000000022	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0090720_1	UniRef90_UPI00164B69D4	101.0	2.98e-24	ERF family protein	N/A
eggNOG-mapper	UHGV-0090720_1	1296659.S5MBS0_9CAUD	106.0	4.9e-27	ERF superfamily	N/A
Pfam	UHGV-0090720_1	PF04404	N/A	N/A	ERF superfamily	ERF
PHROG	UHGV-0090720_2	phrog_72	64.1	1.9e-18	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0090720_2	UniRef90_A0A8D9PDS2	140.0	7.46e-39	NinB protein	N/A
eggNOG-mapper	UHGV-0090720_2	445972.ANACOL_01825	103.0	1.55e-25	N/A	N/A
structural_annotation	UHGV-0090720_2	PF05772,NF007281	N/A	N/A	N/A	N/A
KOfam	UHGV-0090720_3	K03111	141.2	1.19993e-41	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0090720_3	phrog_44	147.6	6.86636e-44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0090720_3	UniRef90_A0A4Z0YC28	178.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0090720_3	1105031.HMPREF1141_2832	170.0	0	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-0090720_3	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0090720_3	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0090720_3	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0090720_3	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0090720_3	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0090720_4	phrog_28936	140.9	6.39973e-42	N/A	unknown function
eggNOG-mapper	UHGV-0090720_4	573061.Clocel_3563	120.0	1.87e-31	N/A	N/A
structural_annotation	UHGV-0090720_4	PF11645,MF_01490,NF040854	N/A	N/A	N/A	N/A
PHROG	UHGV-0090720_5	phrog_20437	167.3	0	DNA replication initiation	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0090720_5	UniRef90_A0A3A6E2X3	229.0	0	N/A	N/A
eggNOG-mapper	UHGV-0090720_5	97138.C820_00626	208.0	0	N/A	N/A
Pfam	UHGV-0090720_5	PF14297	N/A	N/A	Lin1244/Lin1753-like, N-terminal	Lin1244_N
COG	UHGV-0090720_5	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0090720_5	PF14297	N/A	N/A	N/A	N/A
KOfam	UHGV-0090720_6	K01160	57.3	5.1e-16	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0090720_6	phrog_140	130.1	1.3e-38	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0090720_6	UniRef90_A0A7X5DCG3	132.0	3.05e-37	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0090720_6	1095750.HMPREF9970_1673	107.0	3.82e-28	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-0090720_6	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0090720_6	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0090720_6	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
KOfam	UHGV-0090720_8	K22299	41.7	0.000000000027	rghR; HTH-type transcriptional regulator, competence development regulator	N/A
PHROG	UHGV-0090720_8	phrog_5823	48.2	0.00000000000017	transcriptional regulator	transcription regulation
PADLOC	UHGV-0090720_8	retron_type_VI_hth_cluster2_1	41.3	0.00000000005	N/A	Retron
Pfam	UHGV-0090720_8	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0090720_8	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
PHROG	UHGV-0090720_9	phrog_5444	69.0	8.7e-20	N/A	unknown function
eggNOG-mapper	UHGV-0090720_9	1239384.K4MPU6_9CAUD	81.6	1.51e-19	N/A	N/A
KOfam	UHGV-0090720_10	K00558	237.8	0	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-0090720_10	phrog_116	283.3	0	DNA methyltransferase	other
UniRef90	UHGV-0090720_10	UniRef90_A0A6N9QF69	375.0	0	DNA (cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-0090720_10	1582154.A0A0A8WFL3_9CAUD	365.0	0	C-5 cytosine-specific DNA methylase	N/A
PADLOC	UHGV-0090720_10	MTase_II_00058	291.7	0	Type II methyltransferase	RM
Pfam	UHGV-0090720_10	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
NCBIFam	UHGV-0090720_10	TIGR00675.1	N/A	N/A	DNA (cytosine-5-)-methyltransferase	N/A
structural_annotation	UHGV-0090720_10	PF00145,MF_00786,TIGR00675,COG0270	N/A	N/A	N/A	N/A
PHROG	UHGV-0090720_12	phrog_924	44.3	0.000000000004	N/A	unknown function
UniRef90	UHGV-0090720_12	UniRef90_A0A6H1ZAY1	51.6	0.0000011	N/A	N/A
Pfam	UHGV-0090720_12	PF04448	N/A	N/A	N/A	DUF551
structural_annotation	UHGV-0090720_12	NF041588	N/A	N/A	N/A	N/A
PHROG	UHGV-0090720_15	phrog_986	82.6	4.3e-24	RNA-binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0090720_15	UniRef90_UPI001A992566	74.7	0.00000000000000105	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-0090720_15	1280689.AUJC01000003_gene948	74.7	1.86e-16	N/A	N/A
Pfam	UHGV-0090720_15	PF12961	N/A	N/A	N/A	DUF3850
COG	UHGV-0090720_15	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-0090720_15	PF12961,MF_00684,NF003443,COG4043	N/A	N/A	N/A	N/A
PHROG	UHGV-0090720_16	phrog_599	41.3	0.000000000035	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
Pfam	UHGV-0090720_16	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
structural_annotation	UHGV-0090720_16	PF14354,NF007260	N/A	N/A	N/A	N/A
PHROG	UHGV-0090720_18	phrog_11237	88.2	9.2e-26	N/A	unknown function
eggNOG-mapper	UHGV-0090720_18	610130.Closa_0738	104.0	5.66e-27	N/A	N/A
PHROG	UHGV-0090720_19	phrog_309	92.8	3.3e-27	terminase small subunit	head and packaging
UniRef90	UHGV-0090720_19	UniRef90_A0A6B9SX71	95.9	3.63e-22	Transposase/terminase small subunit	N/A
eggNOG-mapper	UHGV-0090720_19	1347393.HG726021_gene488	89.4	2.74e-20	transposase activity	N/A
COG	UHGV-0090720_19	COG2963	N/A	N/A	Transposase InsE and inactivated derivatives	N/A
structural_annotation	UHGV-0090720_19	PF07141	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0090720_21	1410653.JHVC01000011_gene998	74.3	0.0000000000204	N/A	N/A
PHROG	UHGV-0090720_22	phrog_4581	111.6	6.1e-33	terminase small subunit	head and packaging
UniRef90	UHGV-0090720_22	UniRef90_UPI001D11694A	291.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0090720_22	1536769.P40081_01050	189.0	0	HNH nucleases	N/A
Pfam	UHGV-0090720_22	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0090720_22	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-0090720_22	PF13671,MF_03171,NF005251,NF008448,COG4639	N/A	N/A	N/A	N/A
PHROG	UHGV-0090720_23	phrog_1066	45.6	0.000000000001	N/A	unknown function
eggNOG-mapper	UHGV-0090720_23	1211817.CCAT010000007_gene1041	58.2	0.00000000203	N/A	N/A
PHROG	UHGV-0090720_24	phrog_9	298.1	0	terminase large subunit	head and packaging
UniRef90	UHGV-0090720_24	UniRef90_UPI001D10BBFC	809.0	0	terminase large subunit	N/A
eggNOG-mapper	UHGV-0090720_24	1211817.CCAT010000007_gene1040	565.0	0	Terminase	N/A
Pfam	UHGV-0090720_24	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0090720_24	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0090720_24	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0090720_24	PF20441,PF03354,MF_04145,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0090720_25	phrog_12	146.9	1.20512e-43	portal protein	head and packaging
UniRef90	UHGV-0090720_25	UniRef90_UPI00156EE181	517.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0090720_25	1157490.EL26_20720	369.0	0	Phage portal protein	N/A
Pfam	UHGV-0090720_25	PF04860	N/A	N/A	Phage portal protein	Phage_portal
COG	UHGV-0090720_25	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0090720_25	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-0090720_26	K06904	103.2	3.6e-30	N/A	N/A
PHROG	UHGV-0090720_26	phrog_80	136.8	2.2e-40	head maturation protease	head and packaging
UniRef90	UHGV-0090720_26	UniRef90_A0A6N2W9T5	254.0	0	Caudovirus prohead protease	N/A
eggNOG-mapper	UHGV-0090720_26	1123263.AUKY01000046_gene468	193.0	0	Phage prohead protease, HK97 family	N/A
Pfam	UHGV-0090720_26	PF04586	N/A	N/A	Caudovirus prohead serine protease	Peptidase_S78
NCBIFam	UHGV-0090720_26	TIGR01543.1	N/A	N/A	HK97 family phage prohead protease	N/A
COG	UHGV-0090720_26	COG3740	N/A	N/A	Phage head maturation protease	N/A
structural_annotation	UHGV-0090720_26	PF04586,TIGR01543,COG3740	N/A	N/A	N/A	N/A
PHROG	UHGV-0090720_27	phrog_10	175.1	0	major head protein	head and packaging
UniRef90	UHGV-0090720_27	UniRef90_A0A1M6DQ36	403.0	0	Phage major capsid protein, HK97 family	N/A
eggNOG-mapper	UHGV-0090720_27	397290.C810_00421	358.0	0	phage major capsid protein, HK97 family	N/A
Pfam	UHGV-0090720_27	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0090720_27	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0090720_27	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0090720_27	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
UniRef90	UHGV-0090720_28	UniRef90_A0A843GGX3	59.7	0.000000000858	Phage head-tail connector protein	N/A
structural_annotation	UHGV-0090720_28	PF05135,TIGR01560	N/A	N/A	N/A	N/A
UniRef90	UHGV-0090720_29	UniRef90_A0A843GET6	97.4	5.63e-24	Phage head closure protein	N/A
structural_annotation	UHGV-0090720_29	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0090720_30	TIGR01725	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0090720_31	PF05657	N/A	N/A	N/A	N/A
PHROG	UHGV-0090720_32	phrog_88	100.2	2.1e-29	major tail protein	tail
UniRef90	UHGV-0090720_32	UniRef90_A0A843GGC8	135.0	1.4e-35	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0090720_32	1329516.JPST01000017_gene420	66.6	0.0000000000607	Phage tail tube protein	N/A
Pfam	UHGV-0090720_32	PF04630	N/A	N/A	Phage tail tube protein	Phage_TTP_1
NCBIFam	UHGV-0090720_32	TIGR01603.1	N/A	N/A	major tail protein	N/A
COG	UHGV-0090720_32	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0090720_32	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A
KOfam	UHGV-0090720_35	K20283	53.6	7.4e-16	GOLGA4; golgin subfamily A member 4	N/A
PHROG	UHGV-0090720_35	phrog_1272	269.1	0	tail length tape measure protein	tail
UniRef90	UHGV-0090720_35	UniRef90_UPI001EDCC813	487.0	0	phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-0090720_35	908340.HMPREF9406_2570	271.0	0	Phage tail tape measure protein TP901	N/A
Pfam	UHGV-0090720_35	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
COG	UHGV-0090720_35	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
structural_annotation	UHGV-0090720_35	COG5280	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0090720_36	742733.HMPREF9469_05019	60.8	0.00000000198	Phage tail protein	N/A
Pfam	UHGV-0090720_36	PF05709	N/A	N/A	Phage tail protein RIFT-related domain	Sipho_tail