UHGV-0090743 (vOTU-125196)

Viral Genome: UHGV-0090743

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0090743
vOTU ID	vOTU-125196
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_170144
Associated BioSample	SAMEA3136702
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	59.67 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.977
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	47.23
Jumbo phage	No

Genome content
Genome length (bp)	23,596
GC content	34.90%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	30
CDS density	93%
Average CDS length (bps)	728.30
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 59.67)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
eggNOG-mapper	UHGV-0090743_1	226185.EF_1990	142.0	1.34525e-43	N/A	N/A
KOfam	UHGV-0090743_2	K03704	114.4	1.1e-33	cspA; cold shock protein	N/A
PHROG	UHGV-0090743_2	phrog_729	81.0	1.5e-23	cold shock protein	other
UniRef90	UHGV-0090743_2	UniRef90_A0A2Z6BK42	135.0	1.84999e-40	Cold-shock protein	N/A
eggNOG-mapper	UHGV-0090743_2	226185.EF_1991	137.0	7.60064e-42	Cold shock	N/A
PADLOC	UHGV-0090743_2	retron_type_V_csd_cluster85_1	58.8	1.3e-16	N/A	Retron
Pfam	UHGV-0090743_2	PF00313	N/A	N/A	'Cold-shock' DNA-binding domain	CSD
COG	UHGV-0090743_2	COG1278	N/A	N/A	Cold shock protein, CspA family	N/A
structural_annotation	UHGV-0090743_2	PF00313,NF007062,COG1278	N/A	N/A	N/A	N/A
KOfam	UHGV-0090743_3	K22409	124.5	6.2e-37	sle1; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0090743_3	phrog_291	260.4	0	endolysin	lysis
UniRef90	UHGV-0090743_3	UniRef90_E6F1Y4	820.0	0	Glycosyl hydrolase family 25	N/A
eggNOG-mapper	UHGV-0090743_3	226185.EF_1992	798.0	0	and GP 10880731	N/A
Pfam	UHGV-0090743_3	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
Pfam	UHGV-0090743_3	PF01476	N/A	N/A	LysM domain	LysM
COG	UHGV-0090743_3	COG1388	N/A	N/A	LysM repeat	N/A
structural_annotation	UHGV-0090743_3	PF01476,PF18697,TIGR02899,COG3757,COG1388	N/A	N/A	N/A	N/A
PHROG	UHGV-0090743_4	phrog_10091	79.9	3.3e-23	holin	lysis
UniRef90	UHGV-0090743_4	UniRef90_A0A1J6XP00	152.0	0	Phage holin	N/A
eggNOG-mapper	UHGV-0090743_4	226185.EF_1993	152.0	0	Bacteriophage holin	N/A
Pfam	UHGV-0090743_4	PF04531	N/A	N/A	Bacteriophage holin	Phage_holin_1
NCBIFam	UHGV-0090743_4	TIGR01598.1	N/A	N/A	phage holin	N/A
COG	UHGV-0090743_4	COG5546	N/A	N/A	N/A	N/A
PHROG	UHGV-0090743_5	phrog_5620	112.4	1.2e-33	N/A	unknown function
PHROG	UHGV-0090743_6	phrog_134	60.0	3.1e-17	N/A	unknown function
UniRef90	UHGV-0090743_6	UniRef90_A0A2S7M0P2	117.0	6.99e-34	XkdX family protein	N/A
eggNOG-mapper	UHGV-0090743_6	396513.SCA_0513	52.8	0.00000000848	Phage uncharacterised protein (Phage_XkdX)	N/A
Pfam	UHGV-0090743_6	PF09693	N/A	N/A	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
NCBIFam	UHGV-0090743_6	TIGR01669.1	N/A	N/A	XkdX family protein	N/A
PHROG	UHGV-0090743_7	phrog_1536	83.6	1.7e-24	N/A	unknown function
eggNOG-mapper	UHGV-0090743_7	1158602.I590_02582	79.0	9.71e-18	N/A	N/A
PHROG	UHGV-0090743_8	phrog_7389	157.4	0	tail fiber protein	tail
UniRef90	UHGV-0090743_8	UniRef90_UPI001E50BC9F	229.0	0	pyocin knob domain-containing protein	N/A
eggNOG-mapper	UHGV-0090743_8	1385512.N784_12985	55.1	0.00000157	conjugation	N/A
COG	UHGV-0090743_8	COG0840	N/A	N/A	Methyl-accepting chemotaxis protein (MCP)	N/A
PHROG	UHGV-0090743_9	phrog_6907	131.7	1.8e-39	N/A	unknown function
UniRef90	UHGV-0090743_9	UniRef90_A0A2T5D5H6	150.0	1.4013e-45	Collagen-like protein	N/A
eggNOG-mapper	UHGV-0090743_9	1158607.UAU_01046	65.9	0.00000000000268	N/A	N/A
PHROG	UHGV-0090743_10	phrog_9625	175.6	0	N/A	unknown function
eggNOG-mapper	UHGV-0090743_10	1158607.UAU_01045	184.0	0	N/A	N/A
PHROG	UHGV-0090743_11	phrog_6042	382.3	0	minor head protein	head and packaging
UniRef90	UHGV-0090743_11	UniRef90_UPI000F811C55	501.0	0	phage baseplate upper protein	N/A
eggNOG-mapper	UHGV-0090743_11	1201292.DR75_1628	449.0	0	N/A	N/A
Pfam	UHGV-0090743_11	PF10651	N/A	N/A	BppU N-terminal domain	BppU_N
structural_annotation	UHGV-0090743_11	PF10651,NF040788	N/A	N/A	N/A	N/A
PHROG	UHGV-0090743_12	phrog_1067	724.0	0	minor head protein	head and packaging
UniRef90	UHGV-0090743_12	UniRef90_Q833F8	1877.0	0	Minor structural protein	N/A
eggNOG-mapper	UHGV-0090743_12	226185.EF_2001	1877.0	0	Prophage endopeptidase tail	N/A
Pfam	UHGV-0090743_12	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
Pfam	UHGV-0090743_12	PF18013	N/A	N/A	Phage tail lysozyme	Phage_lysozyme2
Pfam	UHGV-0090743_12	PF05257	N/A	N/A	CHAP domain	CHAP
NCBIFam	UHGV-0090743_12	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0090743_12	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0090743_12	PF14594,PF01551,PF18013,TIGR01665,NF040883,COG4926,COG0739	N/A	N/A	N/A	N/A
PHROG	UHGV-0090743_13	phrog_33	73.4	5.5e-21	distal tail protein Dit	tail
UniRef90	UHGV-0090743_13	UniRef90_Q833F7	496.0	0	Tail protein, putative	N/A
eggNOG-mapper	UHGV-0090743_13	226185.EF_2002	496.0	0	phage tail	N/A
COG	UHGV-0090743_13	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0090743_13	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0090743_14	phrog_1686	212.0	0	tail length tape measure protein	tail
UniRef90	UHGV-0090743_14	UniRef90_Q833F6	1340.0	0	Tape measure protein, putative	N/A
eggNOG-mapper	UHGV-0090743_14	226185.EF_2003	1340.0	0	Phage tail tape measure protein, TP901 family	N/A
Pfam	UHGV-0090743_14	PF20155	N/A	N/A	Tape measure protein	TMP_3
NCBIFam	UHGV-0090743_14	TIGR02675.1	N/A	N/A	tape measure protein	N/A
COG	UHGV-0090743_14	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-0090743_14	PF20155,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-0090743_15	phrog_187	65.0	1.2e-18	head-tail adaptor	connector
eggNOG-mapper	UHGV-0090743_15	226185.EF_2004	222.0	0	N/A	N/A
KOfam	UHGV-0090743_16	K20846	53.6	0.0000000000000022	cgkA; kappa-carrageenase [EC:3.2.1.83]	N/A
PHROG	UHGV-0090743_16	phrog_88	165.5	0	major tail protein	tail
UniRef90	UHGV-0090743_16	UniRef90_A0A1J6YRG1	545.0	0	Ig-like domain-containing protein	N/A
eggNOG-mapper	UHGV-0090743_16	226185.EF_2005	551.0	0	Maj_tail_phi13 phage major tail , phi13 family protein	N/A
Pfam	UHGV-0090743_16	PF02368	N/A	N/A	Bacterial Ig-like domain (group 2)	Big_2
NCBIFam	UHGV-0090743_16	TIGR01603.1	N/A	N/A	major tail protein	N/A
COG	UHGV-0090743_16	COG5492	N/A	N/A	N/A	N/A
PHROG	UHGV-0090743_17	phrog_525	63.2	5e-18	N/A	unknown function
eggNOG-mapper	UHGV-0090743_17	226185.EF_2006	246.0	0	N/A	N/A
Pfam	UHGV-0090743_17	PF20765	N/A	N/A	N/A	DUF6838
structural_annotation	UHGV-0090743_17	PF20765	N/A	N/A	N/A	N/A
UniRef90	UHGV-0090743_18	UniRef90_UPI0006672BAF	207.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0090743_18	226185.EF_2007	256.0	0	Bacteriophage HK97-gp10, putative tail-component	N/A
Pfam	UHGV-0090743_18	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-0090743_18	PF17395,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-0090743_19	phrog_615	94.2	1e-27	head-tail adaptor	connector
UniRef90	UHGV-0090743_19	UniRef90_R3I753	231.0	0	50S ribosomal protein L23	N/A
eggNOG-mapper	UHGV-0090743_19	226185.EF_2008	189.0	0	N/A	N/A
structural_annotation	UHGV-0090743_19	PF12206,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0090743_20	phrog_132	56.0	6.5e-16	head-tail adaptor	connector
eggNOG-mapper	UHGV-0090743_20	1201292.DR75_1509	140.0	1.34006e-41	N/A	N/A
PHROG	UHGV-0090743_21	phrog_8832	119.1	1.1e-35	N/A	unknown function
eggNOG-mapper	UHGV-0090743_21	226185.EF_2010	116.0	8.81e-34	N/A	N/A
PHROG	UHGV-0090743_22	phrog_1328	224.7	0	major head protein	head and packaging
UniRef90	UHGV-0090743_22	UniRef90_UPI00065DF913	468.0	0	N/A	N/A
eggNOG-mapper	UHGV-0090743_22	226185.EF_2011	565.0	0	N/A	N/A
Pfam	UHGV-0090743_22	PF17236	N/A	N/A	N/A	DUF5309
structural_annotation	UHGV-0090743_22	PF17236,MF_04119,NF033394,COG4834	N/A	N/A	N/A	N/A
PHROG	UHGV-0090743_23	phrog_172	82.4	7.2e-24	head scaffolding protein	head and packaging
UniRef90	UHGV-0090743_23	UniRef90_UPI000CF22661	323.0	0	N/A	N/A
eggNOG-mapper	UHGV-0090743_23	226185.EF_2012	373.0	0	N/A	N/A
Pfam	UHGV-0090743_23	PF14265	N/A	N/A	N/A	DUF4355
structural_annotation	UHGV-0090743_23	PF14265	N/A	N/A	N/A	N/A
PHROG	UHGV-0090743_24	phrog_5859	162.3	0	N/A	unknown function
eggNOG-mapper	UHGV-0090743_24	1201292.DR75_1513	215.0	0	N/A	N/A
structural_annotation	UHGV-0090743_24	PF03927,MF_02200,NF009840,COG3471	N/A	N/A	N/A	N/A
PHROG	UHGV-0090743_25	phrog_2841	332.6	0	minor head protein	head and packaging
UniRef90	UHGV-0090743_25	UniRef90_R3KRT0	644.0	0	SPP1 gp7 family phage head morphogenesis protein	N/A
eggNOG-mapper	UHGV-0090743_25	226185.EF_2015	629.0	0	cell adhesion	N/A
Pfam	UHGV-0090743_25	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
NCBIFam	UHGV-0090743_25	TIGR01641.1	N/A	N/A	minor capsid protein	N/A
COG	UHGV-0090743_25	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0090743_25	PF04233,TIGR01641	N/A	N/A	N/A	N/A
PHROG	UHGV-0090743_26	phrog_64	288.5	0	portal protein	head and packaging
UniRef90	UHGV-0090743_26	UniRef90_R3KC41	932.0	0	SPP1 family phage portal protein	N/A
eggNOG-mapper	UHGV-0090743_26	1201292.DR75_1516	926.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0090743_26	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0090743_26	PF05133,MF_04120,TIGR01538,COG5518	N/A	N/A	N/A	N/A
PHROG	UHGV-0090743_27	phrog_30251	610.9	0	terminase large subunit	head and packaging
UniRef90	UHGV-0090743_27	UniRef90_A0A7H0FTL4	884.0	0	Phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0090743_27	226185.EF_2017	899.0	0	Terminase-like family	N/A
Pfam	UHGV-0090743_27	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
NCBIFam	UHGV-0090743_27	TIGR01630.1	N/A	N/A	phage terminase large subunit	N/A
COG	UHGV-0090743_27	COG5410	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0090743_27	PF17289,PF03237,MF_04147,NF033889,COG5410,COG5362	N/A	N/A	N/A	N/A
PHROG	UHGV-0090743_28	phrog_309	211.3	0	terminase small subunit	head and packaging
UniRef90	UHGV-0090743_28	UniRef90_UPI00115D8819	268.0	0	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0090743_28	226185.EF_2018	295.0	0	transposase activity	N/A
Pfam	UHGV-0090743_28	PF13384	N/A	N/A	Homeodomain-like domain	HTH_23
COG	UHGV-0090743_28	COG2963	N/A	N/A	Transposase InsE and inactivated derivatives	N/A
structural_annotation	UHGV-0090743_28	PF07141	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0090743_29	PF15968	N/A	N/A	N/A	N/A
UniRef90	UHGV-0090743_30	UniRef90_UPI0006682E5A	577.0	0	N/A	N/A
eggNOG-mapper	UHGV-0090743_30	240302.BN982_00196	151.0	1.03e-40	N/A	N/A
Pfam	UHGV-0090743_30	PF15931	N/A	N/A	N/A	DUF4747
structural_annotation	UHGV-0090743_30	PF15931,MF_00194,NF001460,COG2974	N/A	N/A	N/A	N/A