UHGV-0091596 (vOTU-016294)

Viral Genome: UHGV-0091596

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0091596
vOTU ID	vOTU-016294
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_171227
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	83.77 (Medium-quality)
Trimmed provirus	Yes
CheckV viral markers	12
CheckV host markers	3
Recoded stop codon	No

Viral Content
geNomad score	0.9682
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	39.42
Jumbo phage	No

Genome content
Genome length (bp)	41,300
GC content	59.57%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	63
CDS density	90%
Average CDS length (bps)	590.48
Total tRNA genes	1
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 83.77)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
eggNOG-mapper	UHGV-0091596_1	1121866.AUGK01000003_gene1445	97.1	3.93e-20	N/A	N/A
PHROG	UHGV-0091596_2	phrog_6616	423.1	0	tail protein	tail
UniRef90	UHGV-0091596_2	UniRef90_UPI00085BC306	303.0	0	tail fiber domain-containing protein	N/A
eggNOG-mapper	UHGV-0091596_2	1121866.AUGK01000003_gene1439	343.0	0	Phage minor structural protein	N/A
COG	UHGV-0091596_2	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0091596_2	PF05113,NF033848,COG4379	N/A	N/A	N/A	N/A
PHROG	UHGV-0091596_3	phrog_1194	94.3	9.2e-28	N/A	unknown function
UniRef90	UHGV-0091596_3	UniRef90_A0A4U9RD70	66.2	0.000000000015	Lj965 prophage protein	N/A
eggNOG-mapper	UHGV-0091596_3	1121866.AUGK01000003_gene1438	137.0	4.91e-40	N/A	N/A
Pfam	UHGV-0091596_3	PF20458	N/A	N/A	N/A	DUF6711
structural_annotation	UHGV-0091596_3	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0091596_4	phrog_1535	180.5	0	tail length tape measure protein	tail
eggNOG-mapper	UHGV-0091596_4	1121866.AUGK01000003_gene1437	206.0	0	phage tail tape measure protein	N/A
COG	UHGV-0091596_4	COG1280	N/A	N/A	Threonine/homoserine/homoserine lactone efflux protein	N/A
UniRef90	UHGV-0091596_6	UniRef90_UPI001106B496	251.0	0	N/A	N/A
Pfam	UHGV-0091596_6	PF16478	N/A	N/A	N/A	DUF5055
structural_annotation	UHGV-0091596_6	PF16478	N/A	N/A	N/A	N/A
UniRef90	UHGV-0091596_7	UniRef90_UPI001106E87B	316.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-0091596_7	1232453.BAIF02000058_gene1634	72.4	0.0000000000000414	N/A	N/A
structural_annotation	UHGV-0091596_7	PF16463,TIGR02241,COG5437	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0091596_9	PF17395,TIGR01725	N/A	N/A	N/A	N/A
UniRef90	UHGV-0091596_11	UniRef90_UPI001107333C	224.0	0	DNA-packaging protein	N/A
structural_annotation	UHGV-0091596_11	TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-0091596_12	phrog_247	238.6	0	major head protein	head and packaging
UniRef90	UHGV-0091596_12	UniRef90_UPI001106BB9B	659.0	0	major capsid protein	N/A
eggNOG-mapper	UHGV-0091596_12	1304866.K413DRAFT_3038	268.0	0	N/A	N/A
Pfam	UHGV-0091596_12	PF20036	N/A	N/A	Major capsid protein 13-like	Gp13-like
structural_annotation	UHGV-0091596_12	PF20036,MF_04113,TIGR04387,COG4653	N/A	N/A	N/A	N/A
UniRef90	UHGV-0091596_13	UniRef90_UPI001C9809E0	89.4	7.37e-19	N/A	N/A
structural_annotation	UHGV-0091596_13	PF14265	N/A	N/A	N/A	N/A
PHROG	UHGV-0091596_14	phrog_64	172.6	0	portal protein	head and packaging
UniRef90	UHGV-0091596_14	UniRef90_UPI0011063BFA	1045.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0091596_14	1121866.AUGK01000003_gene1429	357.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0091596_14	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0091596_14	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0091596_15	phrog_38	190.0	0	terminase large subunit	head and packaging
UniRef90	UHGV-0091596_15	UniRef90_UPI001106681D	1117.0	0	phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0091596_15	1121866.AUGK01000003_gene1428	392.0	0	chromosome segregation	N/A
NCBIFam	UHGV-0091596_15	TIGR01630.1	N/A	N/A	phage terminase large subunit	N/A
COG	UHGV-0091596_15	COG5410	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0091596_15	PF17289,PF04466,MF_04147,NF033889,COG5410,COG5362	N/A	N/A	N/A	N/A
Pfam	UHGV-0091596_16	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
KOfam	UHGV-0091596_17	K14060	148.7	4.34403e-44	pinR; putative DNA-invertase from lambdoid prophage Rac	N/A
PHROG	UHGV-0091596_17	phrog_125	166.7	0	DNA invertase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0091596_17	UniRef90_UPI001BB21D57	366.0	0	recombinase family protein	N/A
eggNOG-mapper	UHGV-0091596_17	1280706.AUJE01000062_gene1532	181.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-0091596_17	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
COG	UHGV-0091596_17	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0091596_17	PF00239,PF02796,MF_00489,NF009949,COG1961	N/A	N/A	N/A	N/A
UniRef90	UHGV-0091596_19	UniRef90_UPI001105F6E2	161.0	0	helix-turn-helix domain-containing protein	N/A
PHROG	UHGV-0091596_20	phrog_16683	74.3	9.8e-22	N/A	unknown function
UniRef90	UHGV-0091596_20	UniRef90_UPI0015544479	98.6	9.6e-19	amidoligase family protein	N/A
eggNOG-mapper	UHGV-0091596_20	1304866.K413DRAFT_4659	89.4	1.65e-16	Putative amidoligase enzyme	N/A
Pfam	UHGV-0091596_20	PF12224	N/A	N/A	Putative amidoligase enzyme	Amidoligase_2
UniRef90	UHGV-0091596_21	UniRef90_UPI001E41BE2F	80.9	0.0000000000000104	class II glutamine amidotransferase	N/A
eggNOG-mapper	UHGV-0091596_21	1401067.HMPREF0872_03875	86.3	5.4e-17	N/A	N/A
structural_annotation	UHGV-0091596_22	PF16677	N/A	N/A	N/A	N/A
KOfam	UHGV-0091596_27	K00558	60.0	3.1e-17	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-0091596_27	phrog_26324	120.5	1.8e-35	DNA methyltransferase	other
UniRef90	UHGV-0091596_27	UniRef90_UPI001BB1FE8B	233.0	0	DNA cytosine methyltransferase	N/A
eggNOG-mapper	UHGV-0091596_27	742722.HMPREF9463_00216	178.0	0	C-5 cytosine-specific DNA methylase	N/A
PADLOC	UHGV-0091596_27	MTase_II_00058	53.3	0.0000000000000079	Type II methyltransferase	RM
Pfam	UHGV-0091596_27	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
COG	UHGV-0091596_27	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
eggNOG-mapper	UHGV-0091596_28	1384484.AEQU_0051	96.3	2.18e-20	C-5 cytosine-specific DNA methylase	N/A
COG	UHGV-0091596_28	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
UniRef90	UHGV-0091596_29	UniRef90_UPI0011065E54	149.0	1.4013e-45	helix-turn-helix domain-containing protein	N/A
Pfam	UHGV-0091596_29	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-0091596_29	PF01381,NF010465,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-0091596_32	phrog_21525	44.2	0.0000000000034	N/A	unknown function
structural_annotation	UHGV-0091596_33	PF01649,MF_00500,TIGR00029,COG0268	N/A	N/A	N/A	N/A
UniRef90	UHGV-0091596_35	UniRef90_UPI001105C552	318.0	0	helix-turn-helix domain-containing protein	N/A
Pfam	UHGV-0091596_35	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
KOfam	UHGV-0091596_36	K19779	41.3	0.000000000021	ralR; endodeoxyribonuclease RalR [EC:3.1.-.-]	N/A
UniRef90	UHGV-0091596_36	UniRef90_UPI0011065028	148.0	1.4013e-45	Lar family restriction alleviation protein	N/A
Pfam	UHGV-0091596_36	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
NCBIFam	UHGV-0091596_36	TIGR03655.1	N/A	N/A	Lar family restriction alleviation protein	N/A
dbAPIS	UHGV-0091596_36	APIS033	N/A	N/A	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	N/A
structural_annotation	UHGV-0091596_36	NF007260	N/A	N/A	N/A	N/A
PHROG	UHGV-0091596_42	phrog_355	54.0	0.0000000000000024	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0091596_42	UniRef90_UPI001BB2BAFF	276.0	0	N/A	N/A
eggNOG-mapper	UHGV-0091596_42	97138.C820_00250	114.0	3.65e-31	N/A	N/A
Pfam	UHGV-0091596_42	PF14359	N/A	N/A	N/A	DUF4406
structural_annotation	UHGV-0091596_43	PF06530	N/A	N/A	N/A	N/A
KOfam	UHGV-0091596_45	K02315	128.2	8.7e-38	dnaC; DNA replication protein DnaC	N/A
PHROG	UHGV-0091596_45	phrog_50	106.4	3.3e-31	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0091596_45	UniRef90_UPI00110588D4	469.0	0	ATP-binding protein	N/A
eggNOG-mapper	UHGV-0091596_45	1232453.BAIF02000006_gene1450	134.0	1.75e-35	Bacterial dnaA protein	N/A
Pfam	UHGV-0091596_45	PF01695	N/A	N/A	IstB-like ATP binding protein	IstB_IS21
COG	UHGV-0091596_45	COG1484	N/A	N/A	DNA replication protein DnaC	N/A
structural_annotation	UHGV-0091596_45	PF01695,PF06827,MF_00377,NF005992,COG1484	N/A	N/A	N/A	N/A
PHROG	UHGV-0091596_46	phrog_8489	229.9	0	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0091596_46	UniRef90_UPI001105FF6B	320.0	0	replisome organizer	N/A
eggNOG-mapper	UHGV-0091596_46	1139219.I569_00860	161.0	1.4013e-45	DnaD domain protein	N/A
COG	UHGV-0091596_46	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0091596_46	PF09681,TIGR01714	N/A	N/A	N/A	N/A
UniRef90	UHGV-0091596_47	UniRef90_UPI001BB234D3	316.0	0	N/A	N/A
Pfam	UHGV-0091596_47	PF11753	N/A	N/A	N/A	DUF3310
KOfam	UHGV-0091596_48	K01520	168.7	0	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	N/A
PHROG	UHGV-0091596_48	phrog_135	154.3	0	dUTPase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0091596_48	UniRef90_UPI001E3E2DB2	298.0	0	dUTP diphosphatase	N/A
eggNOG-mapper	UHGV-0091596_48	397291.C804_00898	139.0	1.55e-40	dUTPase	N/A
Pfam	UHGV-0091596_48	PF00692	N/A	N/A	dUTPase	dUTPase
NCBIFam	UHGV-0091596_48	NF001862.0	N/A	N/A	dUTP diphosphatase	N/A
COG	UHGV-0091596_48	COG0756	N/A	N/A	dUTP pyrophosphatase (dUTPase)	N/A
structural_annotation	UHGV-0091596_48	PF00692,MF_00116,NF001862,COG0756	N/A	N/A	N/A	N/A
PHROG	UHGV-0091596_51	phrog_353	44.1	0.0000000000025	toxin	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0091596_51	UniRef90_UPI0011069D09	153.0	0	type II toxin-antitoxin system HicA family toxin	N/A
Pfam	UHGV-0091596_51	PF07927	N/A	N/A	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
COG	UHGV-0091596_51	COG1724	N/A	N/A	Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family	N/A
KOfam	UHGV-0091596_52	K03111	134.0	1.9e-39	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0091596_52	phrog_44	131.2	7.9e-39	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0091596_52	UniRef90_UPI0011074123	306.0	0	single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0091596_52	445975.COLSTE_02276	190.0	0	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-0091596_52	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0091596_52	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0091596_52	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0091596_52	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0091596_52	PF00436,MF_00984,NF005851,COG2965	N/A	N/A	N/A	N/A
UniRef90	UHGV-0091596_53	UniRef90_UPI0011067053	196.0	0	integration host factor	N/A
eggNOG-mapper	UHGV-0091596_53	1504822.CCNO01000015_gene823	100.0	4.21e-26	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits	N/A
NCBIFam	UHGV-0091596_53	NF041260.1	N/A	N/A	integration host factor, actinobacterial type	N/A
COG	UHGV-0091596_53	COG0099	N/A	N/A	Ribosomal protein S13	N/A
structural_annotation	UHGV-0091596_53	PF00416,MF_01315,NF041260,COG0099	N/A	N/A	N/A	N/A
KOfam	UHGV-0091596_54	K07455	216.4	0	recT; recombination protein RecT	N/A
PHROG	UHGV-0091596_54	phrog_148	201.3	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0091596_54	UniRef90_UPI0014858083	563.0	0	recombinase RecT	N/A
eggNOG-mapper	UHGV-0091596_54	1504822.CCNO01000015_gene598	230.0	0	DNA synthesis involved in double-strand break repair via homologous recombination	N/A
Pfam	UHGV-0091596_54	PF03837	N/A	N/A	RecT family	RecT
NCBIFam	UHGV-0091596_54	TIGR00616.1	N/A	N/A	recombinase, phage RecT family	N/A
COG	UHGV-0091596_54	COG3723	N/A	N/A	Recombinational DNA repair protein RecT	N/A
structural_annotation	UHGV-0091596_54	PF03837,NF007351,COG3723	N/A	N/A	N/A	N/A
PHROG	UHGV-0091596_55	phrog_434	232.9	0	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0091596_55	UniRef90_UPI00110603B3	670.0	0	YqaJ viral recombinase family protein	N/A
eggNOG-mapper	UHGV-0091596_55	1504822.CCNO01000015_gene597	224.0	0	YqaJ viral recombinase family	N/A
Pfam	UHGV-0091596_55	PF09588	N/A	N/A	YqaJ-like viral recombinase domain	YqaJ
NCBIFam	UHGV-0091596_55	TIGR03033.1	N/A	N/A	putative phage-type endonuclease	N/A
COG	UHGV-0091596_55	COG5377	N/A	N/A	Phage-related protein, predicted endonuclease	N/A
structural_annotation	UHGV-0091596_55	PF09588,MF_03030,TIGR03033,COG5377	N/A	N/A	N/A	N/A
KOfam	UHGV-0091596_57	K01160	47.8	0.0000000000004	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0091596_57	phrog_140	76.7	3.5e-22	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0091596_57	UniRef90_UPI0011061354	298.0	0	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0091596_57	521003.COLINT_02312	94.7	9.69e-23	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-0091596_57	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0091596_57	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0091596_57	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
UniRef90	UHGV-0091596_58	UniRef90_UPI00101ADA0E	67.8	0.00000000000168	helix-turn-helix domain-containing protein	N/A
structural_annotation	UHGV-0091596_58	PF12728,TIGR01764,COG3311	N/A	N/A	N/A	N/A
KOfam	UHGV-0091596_59	K22300	56.3	8e-16	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0091596_59	phrog_8	48.6	0.00000000000019	transcriptional regulator	transcription regulation
UniRef90	UHGV-0091596_59	UniRef90_UPI001106A548	142.0	3.06884e-43	helix-turn-helix domain-containing protein	N/A
Pfam	UHGV-0091596_59	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0091596_59	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0091596_59	PF13443,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0091596_60	K22300	51.4	0.000000000000025	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0091596_60	phrog_8	44.5	0.0000000000036	transcriptional regulator	transcription regulation
UniRef90	UHGV-0091596_60	UniRef90_UPI00110609FE	199.0	0	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0091596_60	502558.EGYY_06070	51.6	0.00000391	PFAM helix-turn-helix domain protein	N/A
Pfam	UHGV-0091596_60	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0091596_60	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0091596_60	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0091596_61	K14059	101.8	1.2e-29	int; integrase	N/A
PHROG	UHGV-0091596_61	phrog_1	83.2	4.5e-24	integrase	integration and excision
UniRef90	UHGV-0091596_61	UniRef90_UPI001106575D	497.0	0	tyrosine-type recombinase/integrase	N/A
eggNOG-mapper	UHGV-0091596_61	1125712.HMPREF1316_1553	209.0	0	DNA integration	N/A
Pfam	UHGV-0091596_61	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
COG	UHGV-0091596_61	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
eggNOG-mapper	UHGV-0091596_62	1504822.CCNO01000015_gene585	70.1	0.0000000000013	Belongs to the 'phage' integrase family	N/A
COG	UHGV-0091596_62	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A