UHGV-0094492 (vOTU-045350)

Viral Genome: UHGV-0094492

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0094492
vOTU ID	vOTU-045350
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_178411
Associated BioSample	SAMEA3449188
Viral genome confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100 (Complete)
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.981
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	16.58
Jumbo phage	No

Genome content
Genome length (bp)	37,822
GC content	52.08%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	57
CDS density	96%
Average CDS length (bps)	639.42
Total tRNA genes	1
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0094492_3	phrog_27545	119.7	2e-35	N/A	unknown function
UniRef90	UHGV-0094492_3	UniRef90_A0A2V2GQB6	290.0	0	Chitin-binding type-3 domain-containing protein	N/A
eggNOG-mapper	UHGV-0094492_3	411471.SUBVAR_06976	138.0	6.64e-40	N/A	N/A
Pfam	UHGV-0094492_3	PF02839	N/A	N/A	Carbohydrate-binding module family 5/12	CBM_5_12
PHROG	UHGV-0094492_4	phrog_937	54.8	0.0000000000000016	hemolysin	other
eggNOG-mapper	UHGV-0094492_4	1235835.C814_01939	77.4	9.33e-17	N/A	N/A
eggNOG-mapper	UHGV-0094492_5	1347392.CCEZ01000043_gene405	55.5	0.0000000147	N/A	N/A
KOfam	UHGV-0094492_6	K01448	59.1	6.6e-17	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0094492_6	phrog_435	74.9	1.5e-21	endolysin	lysis
UniRef90	UHGV-0094492_6	UniRef90_A0A2V2GRI9	476.0	0	MurNAc-LAA domain-containing protein	N/A
eggNOG-mapper	UHGV-0094492_6	994573.T472_0210960	94.0	1.28e-20	n-acetylmuramoyl-l-alanine amidase	N/A
Pfam	UHGV-0094492_6	PF01520	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_3
COG	UHGV-0094492_6	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0094492_6	PF01520,MF_00562,TIGR02883,COG0860	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0094492_7	MF_01304	N/A	N/A	N/A	N/A
PHROG	UHGV-0094492_8	phrog_14770	103.6	4.2e-31	N/A	unknown function
UniRef90	UHGV-0094492_8	UniRef90_A0A8D9UHE1	1649.0	0	PolyVal ADP-ribosyltransferase	N/A
eggNOG-mapper	UHGV-0094492_8	445971.ANASTE_00728	282.0	0	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair	N/A
Pfam	UHGV-0094492_8	PF18857	N/A	N/A	Large polyvalent protein associated domain 38	LPD38
COG	UHGV-0094492_8	COG0503	N/A	N/A	Adenine/guanine phosphoribosyltransferase or related PRPP-binding protein	N/A
KOfam	UHGV-0094492_9	K14059	204.4	0	int; integrase	N/A
PHROG	UHGV-0094492_9	phrog_1	184.2	0	integrase	integration and excision
UniRef90	UHGV-0094492_9	UniRef90_A0A8D9PE11	351.0	0	Integrase	N/A
eggNOG-mapper	UHGV-0094492_9	693746.OBV_01970	155.0	4.65007e-41	Phage integrase family	N/A
Pfam	UHGV-0094492_9	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0094492_9	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0094492_9	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
UniRef90	UHGV-0094492_13	UniRef90_UPI001E2EC555	213.0	0	helix-turn-helix domain-containing protein	N/A
Pfam	UHGV-0094492_13	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0094492_13	PF12844,MF_00535,NF041677,COG1396	N/A	N/A	N/A	N/A
UniRef90	UHGV-0094492_15	UniRef90_UPI0018995761	79.0	4.56e-18	helix-turn-helix transcriptional regulator	N/A
structural_annotation	UHGV-0094492_15	PF13560,NF041951,COG1396	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0094492_16	PF12728,NF040990	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0094492_17	NF041588	N/A	N/A	N/A	N/A
PHROG	UHGV-0094492_21	phrog_659	196.3	0	Sak-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0094492_21	UniRef90_UPI001E5A6693	420.0	0	N/A	N/A
eggNOG-mapper	UHGV-0094492_21	1507.HMPREF0262_00431	236.0	0	N/A	N/A
Pfam	UHGV-0094492_21	PF06378	N/A	N/A	N/A	DUF1071
structural_annotation	UHGV-0094492_21	PF06378,COG4712	N/A	N/A	N/A	N/A
PHROG	UHGV-0094492_22	phrog_1389	67.3	2.2e-19	N/A	unknown function
eggNOG-mapper	UHGV-0094492_22	883156.HMPREF9282_01223	68.9	0.000000000000144	N/A	N/A
structural_annotation	UHGV-0094492_22	PF11056,TIGR04376,COG1842	N/A	N/A	N/A	N/A
PHROG	UHGV-0094492_23	phrog_7566	53.1	0.0000000000000051	N/A	unknown function
eggNOG-mapper	UHGV-0094492_23	693746.OBV_24070	70.1	0.0000000000000483	N/A	N/A
KOfam	UHGV-0094492_24	K03111	131.7	8.7e-39	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0094492_24	phrog_44	133.9	1.1e-39	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0094492_24	UniRef90_UPI001E2A5A6F	236.0	0	single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0094492_24	1235835.C814_01372	127.0	5.9e-36	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-0094492_24	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0094492_24	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0094492_24	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0094492_24	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0094492_24	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0094492_25	phrog_16304	90.7	1.9e-26	N/A	unknown function
UniRef90	UHGV-0094492_25	UniRef90_UPI001E560709	425.0	0	N/A	N/A
eggNOG-mapper	UHGV-0094492_25	290402.Cbei_3733	61.6	0.0000000132	DnaD domain protein	N/A
Pfam	UHGV-0094492_25	PF19808	N/A	N/A	N/A	DUF6291
COG	UHGV-0094492_25	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0094492_25	PF19808	N/A	N/A	N/A	N/A
PHROG	UHGV-0094492_26	phrog_9804	165.5	0	N/A	unknown function
UniRef90	UHGV-0094492_26	UniRef90_UPI001E312ACC	366.0	0	replicative helicase loader/inhibitor	N/A
eggNOG-mapper	UHGV-0094492_26	1121344.JHZO01000003_gene981	179.0	0	Loader and inhibitor of phage G40P	N/A
Pfam	UHGV-0094492_26	PF11417	N/A	N/A	Loader and inhibitor of phage G40P	Inhibitor_G39P
structural_annotation	UHGV-0094492_26	PF11417	N/A	N/A	N/A	N/A
KOfam	UHGV-0094492_27	K01160	68.1	2.3e-19	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0094492_27	phrog_34	72.4	7.5e-21	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0094492_27	UniRef90_A0A498CNH4	141.0	2.14006e-41	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0094492_27	1226322.HMPREF1545_04070	54.7	0.0000000839	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	N/A
COG	UHGV-0094492_27	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0094492_27	PF19595,NF007305,COG4570	N/A	N/A	N/A	N/A
KOfam	UHGV-0094492_28	K00558	47.5	0.00000000000016	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-0094492_28	phrog_757	120.9	7.9e-36	DNA methyltransferase	other
UniRef90	UHGV-0094492_28	UniRef90_A0A2V2GLN0	410.0	0	DNA methyltransferase (Fragment)	N/A
eggNOG-mapper	UHGV-0094492_28	622312.ROSEINA2194_01264	353.0	0	C-5 cytosine-specific DNA methylase	N/A
Pfam	UHGV-0094492_28	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
COG	UHGV-0094492_28	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0094492_28	PF00145,MF_00341,TIGR00675,COG0270	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0094492_30	TIGR04381	N/A	N/A	N/A	N/A
PHROG	UHGV-0094492_37	phrog_38832	80.6	1.5e-23	N/A	unknown function
eggNOG-mapper	UHGV-0094492_37	665956.HMPREF1032_00143	71.2	0.000000000000472	N/A	N/A
structural_annotation	UHGV-0094492_37	PF11717	N/A	N/A	N/A	N/A
PHROG	UHGV-0094492_42	phrog_36	43.8	0.0000000000051	transcriptional regulator	transcription regulation
UniRef90	UHGV-0094492_42	UniRef90_UPI001D0837DD	116.0	1.77e-30	N/A	N/A
eggNOG-mapper	UHGV-0094492_42	428125.CLOLEP_01806	88.2	3.8e-20	N/A	N/A
structural_annotation	UHGV-0094492_42	PF07374,TIGR01636	N/A	N/A	N/A	N/A
PHROG	UHGV-0094492_44	phrog_7339	102.8	3.1e-30	DNA repair exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0094492_44	UniRef90_A0A2V2GLL9	533.0	0	Metallophos_2 domain-containing protein	N/A
eggNOG-mapper	UHGV-0094492_44	1150474.JQJI01000006_gene784	94.4	3.71e-20	metallophosphoesterase	N/A
Pfam	UHGV-0094492_44	PF00149	N/A	N/A	Calcineurin-like phosphoesterase	Metallophos
COG	UHGV-0094492_44	COG1408	N/A	N/A	Predicted phosphohydrolase, MPP superfamily	N/A
structural_annotation	UHGV-0094492_44	PF12850,MF_00325,NF003118,COG1311	N/A	N/A	N/A	N/A
UniRef90	UHGV-0094492_45	UniRef90_A0A8D9UHF6	199.0	0	N/A	N/A
eggNOG-mapper	UHGV-0094492_45	272630.MexAM1_META1p3985	57.8	0.00000000144	N/A	N/A
Pfam	UHGV-0094492_45	PF18932	N/A	N/A	N/A	DUF5681
KOfam	UHGV-0094492_46	K06909	139.3	3.50002e-41	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0094492_46	phrog_979	164.1	0	terminase large subunit	head and packaging
UniRef90	UHGV-0094492_46	UniRef90_A0A8D9UH35	940.0	0	Large subunit terminase	N/A
eggNOG-mapper	UHGV-0094492_46	1232449.BAHV02000016_gene1824	480.0	0	N/A	N/A
Pfam	UHGV-0094492_46	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-0094492_46	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0094492_46	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0094492_48	phrog_156	174.4	0	portal protein	head and packaging
UniRef90	UHGV-0094492_48	UniRef90_A0A8D9UHD1	1119.0	0	Portal protein	N/A
eggNOG-mapper	UHGV-0094492_48	1121091.AUMP01000003_gene2583	365.0	0	N/A	N/A
Pfam	UHGV-0094492_48	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0094492_48	PF16510,MF_04120,TIGR01538,COG5518	N/A	N/A	N/A	N/A
UniRef90	UHGV-0094492_49	UniRef90_A0A8D9UHD6	122.0	1.65e-35	Ogr/Delta-like zinc finger	N/A
structural_annotation	UHGV-0094492_49	PF20020	N/A	N/A	N/A	N/A
UniRef90	UHGV-0094492_50	UniRef90_A0A8D9UHB9	417.0	0	Non-structural protein 5	N/A
PHROG	UHGV-0094492_51	phrog_1357	242.8	0	major head protein	head and packaging
UniRef90	UHGV-0094492_51	UniRef90_A0A8D9UHB3	601.0	0	Major capsid protein	N/A
eggNOG-mapper	UHGV-0094492_51	696281.Desru_1092	290.0	0	N/A	N/A
NCBIFam	UHGV-0094492_51	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-0094492_51	PF13252,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0094492_52	phrog_15239	41.8	0.000000000012	N/A	unknown function
PHROG	UHGV-0094492_54	phrog_3287	129.8	1.6e-38	virion structural protein	head and packaging
eggNOG-mapper	UHGV-0094492_54	665956.HMPREF1032_03917	479.0	0	N/A	N/A
structural_annotation	UHGV-0094492_54	PF11134,MF_01282,TIGR03300,COG5276	N/A	N/A	N/A	N/A
KOfam	UHGV-0094492_55	K19721	164.9	0	COL5AS; collagen type V/XI/XXIV/XXVII, alpha	N/A
PHROG	UHGV-0094492_55	phrog_819	164.3	0	tail protein	tail
UniRef90	UHGV-0094492_55	UniRef90_A0A8D9PE13	787.0	0	Virion structural protein	N/A
Pfam	UHGV-0094492_55	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
COG	UHGV-0094492_55	COG4675	N/A	N/A	Phage tail collar domain	N/A
Pfam	UHGV-0094492_57	PF13964	N/A	N/A	Kelch motif	Kelch_6