UHGV-0094848 (vOTU-130495)

Viral Genome: UHGV-0094848

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0094848
vOTU ID	vOTU-130495
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_214860
Associated BioSample	SAMEA3541501
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	67.67 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	2
Recoded stop codon	No

Viral Content
geNomad score	0.9746
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	48.6
Jumbo phage	No

Genome content
Genome length (bp)	30,806
GC content	32.60%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	42
CDS density	86%
Average CDS length (bps)	632.36
Total tRNA genes	1
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 67.67)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0094848_1	phrog_365	153.9	0	tail protein	tail
UniRef90	UHGV-0094848_1	UniRef90_A0A2K1EF16	163.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0094848_1	1121121.KB894312_gene3149	156.0	0	Phage portal protein	N/A
Pfam	UHGV-0094848_1	PF09393	N/A	N/A	Phage tail tube protein	DUF2001
structural_annotation	UHGV-0094848_1	PF09393,TIGR02241,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0094848_2	phrog_279	300.7	0	tail sheath	tail
UniRef90	UHGV-0094848_2	UniRef90_UPI000DE1D5A3	417.0	0	phage tail sheath family protein	N/A
eggNOG-mapper	UHGV-0094848_2	1029718.SFBM_0128	400.0	0	Phage tail sheath protein beta-sandwich domain	N/A
Pfam	UHGV-0094848_2	PF17481	N/A	N/A	Phage tail sheath protein beta-sandwich domain	Phage_sheath_1N
Pfam	UHGV-0094848_2	PF04984	N/A	N/A	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
Pfam	UHGV-0094848_2	PF17482	N/A	N/A	Phage tail sheath C-terminal domain	Phage_sheath_1C
structural_annotation	UHGV-0094848_2	PF17482,PF04984,PF17481,COG4386	N/A	N/A	N/A	N/A
PHROG	UHGV-0094848_3	phrog_966	63.2	2.7e-18	N/A	unknown function
UniRef90	UHGV-0094848_3	UniRef90_T3DFM8	48.9	0.00000258	Putative phage protein	N/A
eggNOG-mapper	UHGV-0094848_3	1195236.CTER_3998	50.1	0.000000173	N/A	N/A
PHROG	UHGV-0094848_4	phrog_525	92.4	4.6e-27	N/A	unknown function
UniRef90	UHGV-0094848_4	UniRef90_T3DEM0	71.6	0.000000000000426	Putative phage protein	N/A
eggNOG-mapper	UHGV-0094848_4	1151292.QEW_1340	71.6	0.0000000000000715	N/A	N/A
Pfam	UHGV-0094848_4	PF20765	N/A	N/A	N/A	DUF6838
structural_annotation	UHGV-0094848_4	PF20765,COG5003	N/A	N/A	N/A	N/A
PHROG	UHGV-0094848_5	phrog_5	62.7	4.4e-18	tail completion or Neck1 protein	connector
UniRef90	UHGV-0094848_5	UniRef90_A0A8B2WXM8	119.0	9.86e-31	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0094848_5	608534.GCWU000341_02289	114.0	1.78e-29	Bacteriophage HK97-gp10, putative tail-component	N/A
Pfam	UHGV-0094848_5	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-0094848_5	PF04883,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-0094848_6	phrog_615	127.8	3.9e-38	head-tail adaptor	connector
UniRef90	UHGV-0094848_6	UniRef90_UPI000ACDB421	97.8	6.76e-24	ABC transporter ATP-binding protein	N/A
eggNOG-mapper	UHGV-0094848_6	1408823.AXUS01000024_gene2719	112.0	1.43e-30	N/A	N/A
structural_annotation	UHGV-0094848_6	PF12206,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0094848_7	phrog_132	70.0	3.1e-20	head-tail adaptor	connector
UniRef90	UHGV-0094848_7	UniRef90_A0A8F2D6U0	66.6	0.00000000000977	Phage head-tail connector protein	N/A
eggNOG-mapper	UHGV-0094848_7	1567012.A0A0A7RTF6_9VIRU	59.3	0.00000000126	Phage gp6-like head-tail connector protein	N/A
Pfam	UHGV-0094848_7	PF05135	N/A	N/A	Phage gp6-like head-tail connector protein	Phage_connect_1
structural_annotation	UHGV-0094848_7	PF05135	N/A	N/A	N/A	N/A
PHROG	UHGV-0094848_8	phrog_247	335.8	0	major head protein	head and packaging
UniRef90	UHGV-0094848_8	UniRef90_UPI000C089D46	521.0	0	phage coat protein	N/A
eggNOG-mapper	UHGV-0094848_8	445335.CBN_1379	516.0	0	N/A	N/A
COG	UHGV-0094848_8	COG1106	N/A	N/A	ATPase/GTPase, AAA15 family	N/A
structural_annotation	UHGV-0094848_8	PF20036,MF_04113,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0094848_9	phrog_194	141.9	4.30058e-42	head scaffolding protein	head and packaging
UniRef90	UHGV-0094848_9	UniRef90_UPI001C013BCC	158.0	1.4013e-45	phage scaffolding protein	N/A
eggNOG-mapper	UHGV-0094848_9	742740.HMPREF9474_02354	142.0	3.29e-40	Phage minor structural protein GP20	N/A
Pfam	UHGV-0094848_9	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-0094848_9	PF06810,MF_02110	N/A	N/A	N/A	N/A
PHROG	UHGV-0094848_11	phrog_115	370.2	0	minor head protein	head and packaging
UniRef90	UHGV-0094848_11	UniRef90_UPI00102FDD98	304.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-0094848_11	1411095.X5JAI9_9CAUD	291.0	0	Phage Mu protein F like protein	N/A
Pfam	UHGV-0094848_11	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
NCBIFam	UHGV-0094848_11	TIGR01641.1	N/A	N/A	minor capsid protein	N/A
structural_annotation	UHGV-0094848_11	PF04233,TIGR01641,COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-0094848_12	phrog_64	342.9	0	portal protein	head and packaging
UniRef90	UHGV-0094848_12	UniRef90_UPI000DE4FA1A	521.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0094848_12	1508644.SFBmNL_00407	473.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0094848_12	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0094848_12	PF05133,MF_04120,TIGR01538,COG5518	N/A	N/A	N/A	N/A
KOfam	UHGV-0094848_13	K06909	422.7	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0094848_13	phrog_3717	245.8	0	terminase large subunit	head and packaging
UniRef90	UHGV-0094848_13	UniRef90_A0A844DY69	638.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0094848_13	1408823.AXUS01000024_gene2712	621.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-0094848_13	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-0094848_13	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-0094848_13	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0094848_13	COG1783	N/A	N/A	Phage terminase large subunit	N/A
HAMAP	UHGV-0094848_13	MF_04145	N/A	N/A	Terminase, large subunit	N/A
structural_annotation	UHGV-0094848_13	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
KOfam	UHGV-0094848_14	K07474	131.0	1.7e-38	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-0094848_14	phrog_51	145.1	3.89561e-43	terminase small subunit	head and packaging
UniRef90	UHGV-0094848_14	UniRef90_H1LSV1	184.0	0	Terminase small subunit family protein	N/A
eggNOG-mapper	UHGV-0094848_14	861454.HMPREF9099_00529	184.0	0	Terminase small subunit	N/A
Pfam	UHGV-0094848_14	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-0094848_14	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-0094848_14	PF03592,COG3728	N/A	N/A	N/A	N/A
PHROG	UHGV-0094848_15	phrog_36	78.6	8.9e-23	transcriptional regulator	transcription regulation
UniRef90	UHGV-0094848_15	UniRef90_A0A2V2GJ29	92.0	3.38e-21	Sigma70_r4 domain-containing protein	N/A
eggNOG-mapper	UHGV-0094848_15	1235800.C819_02243	64.7	0.000000000024	N/A	N/A
structural_annotation	UHGV-0094848_15	PF07374,MF_00674,NF007227,COG1342	N/A	N/A	N/A	N/A
KOfam	UHGV-0094848_18	K01160	64.6	2.5e-18	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0094848_18	phrog_140	123.8	1.1e-36	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0094848_18	UniRef90_A0A0U3FEM1	123.0	4.31e-33	Endodeoxyribonuclease RusA family protein	N/A
eggNOG-mapper	UHGV-0094848_18	1123263.AUKY01000072_gene2102	116.0	2.36e-31	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-0094848_18	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0094848_18	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0094848_18	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-0094848_19	phrog_2514	108.3	5.4e-32	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0094848_19	1158602.I590_00669	147.0	8.28001e-40	Replication initiation and membrane attachment	N/A
COG	UHGV-0094848_19	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0094848_19	PF19481,PF04492,TIGR01610,COG5529	N/A	N/A	N/A	N/A
KOfam	UHGV-0094848_20	K03111	136.3	3.4e-40	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0094848_20	phrog_44	142.3	2.90069e-42	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0094848_20	UniRef90_R6PGX1	215.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0094848_20	1280680.AUJU01000003_gene3256	132.0	1.55e-37	Single-strand binding protein family	N/A
Pfam	UHGV-0094848_20	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0094848_20	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0094848_20	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0094848_20	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0094848_20	PF00436,MF_00984,NF005580,COG0629	N/A	N/A	N/A	N/A
KOfam	UHGV-0094848_21	K07455	291.1	0	recT; recombination protein RecT	N/A
PHROG	UHGV-0094848_21	phrog_148	274.6	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0094848_21	UniRef90_UPI0014317E61	315.0	0	recombinase RecT	N/A
eggNOG-mapper	UHGV-0094848_21	1273103.NM10_01169	282.0	0	Recombinase, phage RecT family	N/A
Pfam	UHGV-0094848_21	PF03837	N/A	N/A	RecT family	RecT
NCBIFam	UHGV-0094848_21	TIGR00616.1	N/A	N/A	recombinase, phage RecT family	N/A
COG	UHGV-0094848_21	COG3723	N/A	N/A	Recombinational DNA repair protein RecT	N/A
structural_annotation	UHGV-0094848_21	PF03837,NF007351,COG3723	N/A	N/A	N/A	N/A
PHROG	UHGV-0094848_22	phrog_434	335.4	0	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0094848_22	UniRef90_UPI0014313337	281.0	0	YqaJ viral recombinase family protein	N/A
eggNOG-mapper	UHGV-0094848_22	580331.Thit_1407	255.0	0	YqaJ viral recombinase family	N/A
Pfam	UHGV-0094848_22	PF09588	N/A	N/A	YqaJ-like viral recombinase domain	YqaJ
NCBIFam	UHGV-0094848_22	TIGR03033.1	N/A	N/A	putative phage-type endonuclease	N/A
COG	UHGV-0094848_22	COG5377	N/A	N/A	Phage-related protein, predicted endonuclease	N/A
structural_annotation	UHGV-0094848_22	PF09588,MF_03030,TIGR03033,COG5377	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0094848_24	NF040595	N/A	N/A	N/A	N/A
UniRef90	UHGV-0094848_28	UniRef90_A0A417ACE5	74.3	3.49e-16	HTH cro/C1-type domain-containing protein	N/A
structural_annotation	UHGV-0094848_28	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0094848_29	K22300	82.3	8.3e-24	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0094848_29	phrog_8	66.9	4.2e-19	transcriptional regulator	transcription regulation
UniRef90	UHGV-0094848_29	UniRef90_UPI00130D4B76	72.8	0.0000000000000551	helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-0094848_29	1114965.Spaf_1853	69.3	0.000000000000128	Transcriptional	N/A
PADLOC	UHGV-0094848_29	retron_type_VI_hth_cluster2_1	45.7	0.00000000000061	N/A	Retron
Pfam	UHGV-0094848_29	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0094848_29	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0094848_29	PF01381,MF_00535,NF007257,COG1396	N/A	N/A	N/A	N/A
UniRef90	UHGV-0094848_30	UniRef90_UPI00056648E9	148.0	2.52234e-44	N/A	N/A
eggNOG-mapper	UHGV-0094848_30	1410626.JHXB01000002_gene632	141.0	1.85952e-42	N/A	N/A
Pfam	UHGV-0094848_30	PF14076	N/A	N/A	N/A	DUF4258
structural_annotation	UHGV-0094848_30	PF14076,TIGR02683,COG2929	N/A	N/A	N/A	N/A
PHROG	UHGV-0094848_31	phrog_29304	97.8	5.7e-29	N/A	unknown function
UniRef90	UHGV-0094848_31	UniRef90_UPI001C10E36D	123.0	2e-35	type II toxin-antitoxin system MqsA family antitoxin	N/A
eggNOG-mapper	UHGV-0094848_31	638302.HMPREF0908_0398	110.0	7.33e-31	N/A	N/A
NCBIFam	UHGV-0094848_31	TIGR03831.1	N/A	N/A	YgiT-type zinc finger protein	N/A
structural_annotation	UHGV-0094848_31	PF14122,TIGR03829	N/A	N/A	N/A	N/A
PHROG	UHGV-0094848_33	phrog_7312	47.8	0.00000000000021	N/A	unknown function
PADLOC	UHGV-0094848_33	KwaA_00013	52.7	0.000000000000012	N/A	Kiwa
structural_annotation	UHGV-0094848_33	NF041622	N/A	N/A	N/A	N/A
KOfam	UHGV-0094848_34	K06400	331.2	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0094848_34	phrog_95	354.1	0	integrase	integration and excision
UniRef90	UHGV-0094848_34	UniRef90_A0A1C5T1J0	517.0	0	DNA-invertase hin	N/A
eggNOG-mapper	UHGV-0094848_34	293826.Amet_2616	467.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-0094848_34	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0094848_34	PF07508	N/A	N/A	Recombinase	Recombinase
COG	UHGV-0094848_34	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0094848_34	PF07508,PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0094848_35	PF14425	N/A	N/A	N/A	N/A
PHROG	UHGV-0094848_36	phrog_115	146.2	2.70451e-43	minor head protein	head and packaging
UniRef90	UHGV-0094848_36	UniRef90_A0A0A7RVY7	225.0	0	Head morphogenesis protein	N/A
eggNOG-mapper	UHGV-0094848_36	1567014.A0A0A7RVY7_9VIRU	225.0	0	Phage Mu protein F like protein	N/A
Pfam	UHGV-0094848_36	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
Pfam	UHGV-0094848_36	PF14424	N/A	N/A	The BURPS668_1122 family of deaminases	Toxin-deaminase
NCBIFam	UHGV-0094848_36	TIGR01641.1	N/A	N/A	minor capsid protein	N/A
PHROG	UHGV-0094848_37	phrog_1865	52.6	0.0000000000000067	N/A	unknown function
eggNOG-mapper	UHGV-0094848_37	1304284.L21TH_1493	50.1	0.000000244	N/A	N/A
structural_annotation	UHGV-0094848_37	PF07073,MF_01077,NF037951,COG4568	N/A	N/A	N/A	N/A
UniRef90	UHGV-0094848_39	UniRef90_UPI0010658721	144.0	1.99965e-42	N/A	N/A
eggNOG-mapper	UHGV-0094848_39	1508644.SFBmNL_01554	131.0	2.48e-37	N/A	N/A
Pfam	UHGV-0094848_39	PF10387	N/A	N/A	N/A	DUF2442
COG	UHGV-0094848_39	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0094848_39	PF10387	N/A	N/A	N/A	N/A
KOfam	UHGV-0094848_42	K02316	52.5	5.8e-19	dnaG; DNA primase [EC:2.7.7.101]	N/A
PHROG	UHGV-0094848_42	phrog_8841	614.0	0	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0094848_42	UniRef90_R6PJN0	1668.0	0	CHC2 zinc finger domain protein	N/A
eggNOG-mapper	UHGV-0094848_42	887325.HMPREF0381_0374	885.0	0	N/A	N/A
PADLOC	UHGV-0094848_42	drt-cluster192	43.7	1.2e-20	DRT	DRT
Pfam	UHGV-0094848_42	PF01807	N/A	N/A	CHC2 zinc finger	zf-CHC2
Pfam	UHGV-0094848_42	PF06048	N/A	N/A	N/A	DUF927
Pfam	UHGV-0094848_42	PF18662	N/A	N/A	Cch helix turn helix domain	HTH_56
COG	UHGV-0094848_42	COG0358	N/A	N/A	DNA primase (bacterial type)	N/A
structural_annotation	UHGV-0094848_42	PF06048,PF01807,PF18662,PF19898,MF_00974,MF_00016,TIGR01391,NF011296,COG5519,COG0358	N/A	N/A	N/A	N/A