UHGV-0096309 (vOTU-035328)

Viral Genome: UHGV-0096309

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0096309
vOTU ID	vOTU-035328
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_204814
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	71.6 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.976
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	31.26
Jumbo phage	No

Genome content
Genome length (bp)	31,051
GC content	46.77%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	53
CDS density	89%
Average CDS length (bps)	520.92
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 71.6)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0096309_2	phrog_372	363.3	0	tail protein	tail
UniRef90	UHGV-0096309_2	UniRef90_UPI001C0AA9E4	289.0	0	N/A	N/A
eggNOG-mapper	UHGV-0096309_2	556261.HMPREF0240_01282	259.0	0	N/A	N/A
Pfam	UHGV-0096309_2	PF05895	N/A	N/A	N/A	DUF859
COG	UHGV-0096309_2	COG4675	N/A	N/A	Phage tail collar domain	N/A
structural_annotation	UHGV-0096309_2	PF05895,PF08931,MF_04116,NF010681,COG3291	N/A	N/A	N/A	N/A
PHROG	UHGV-0096309_3	phrog_6616	101.7	2.8e-30	tail protein	tail
UniRef90	UHGV-0096309_3	UniRef90_A0A143YYZ5	123.0	5.57e-26	Peptidase S74 domain-containing protein	N/A
eggNOG-mapper	UHGV-0096309_3	469596.HMPREF9488_01318	275.0	0	N/A	N/A
structural_annotation	UHGV-0096309_3	PF05113,NF033848,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-0096309_4	phrog_1194	123.1	1.2e-36	N/A	unknown function
UniRef90	UHGV-0096309_4	UniRef90_A0A0B3VTI7	110.0	4.15e-29	N/A	N/A
eggNOG-mapper	UHGV-0096309_4	1414720.CBYM010000002_gene561	115.0	1.44e-31	N/A	N/A
Pfam	UHGV-0096309_4	PF20458	N/A	N/A	N/A	DUF6711
structural_annotation	UHGV-0096309_4	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0096309_5	phrog_1535	75.6	4e-22	tail length tape measure protein	tail
eggNOG-mapper	UHGV-0096309_5	469596.HMPREF9488_01316	101.0	7.07e-21	N/A	N/A
PHROG	UHGV-0096309_6	phrog_64	224.9	0	portal protein	head and packaging
UniRef90	UHGV-0096309_6	UniRef90_UPI001C02F349	739.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0096309_6	1123263.AUKY01000015_gene1609	413.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0096309_6	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0096309_6	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0096309_7	phrog_38	188.7	0	terminase large subunit	head and packaging
UniRef90	UHGV-0096309_7	UniRef90_A0A810QA10	671.0	0	Terminase	N/A
eggNOG-mapper	UHGV-0096309_7	1298920.KI911353_gene2682	482.0	0	TIGRFAM Phage	N/A
NCBIFam	UHGV-0096309_7	TIGR01630.1	N/A	N/A	phage terminase large subunit	N/A
COG	UHGV-0096309_7	COG5410	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0096309_7	PF17289,PF04466,MF_04147,NF033889,COG5410,COG5362	N/A	N/A	N/A	N/A
PHROG	UHGV-0096309_8	phrog_1233	77.2	2.6e-22	N/A	unknown function
UniRef90	UHGV-0096309_8	UniRef90_UPI001C39EFB9	115.0	9.68e-31	Dienelactone hydrolase family protein	N/A
eggNOG-mapper	UHGV-0096309_8	1232453.BAIF02000011_gene3355	105.0	7.32e-28	N/A	N/A
KOfam	UHGV-0096309_10	K14060	144.5	8.70206e-43	pinR; putative DNA-invertase from lambdoid prophage Rac	N/A
PHROG	UHGV-0096309_10	phrog_125	185.0	0	DNA invertase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0096309_10	UniRef90_A0A352IJG9	228.0	0	Resolvase (Fragment)	N/A
eggNOG-mapper	UHGV-0096309_10	411467.BACCAP_03968	215.0	0	COG COG1961 Site-specific recombinases, DNA invertase Pin homologs	N/A
Pfam	UHGV-0096309_10	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
COG	UHGV-0096309_10	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0096309_10	PF00239,PF02796,NF009949,COG1961	N/A	N/A	N/A	N/A
PHROG	UHGV-0096309_14	phrog_606	44.5	0.0000000000013	terminase small subunit	head and packaging
UniRef90	UHGV-0096309_14	UniRef90_UPI001D08D6B6	257.0	0	DNA-packaging protein	N/A
eggNOG-mapper	UHGV-0096309_14	1415774.U728_1676	70.9	0.000000000000471	DNA-packaging protein gp3	N/A
Pfam	UHGV-0096309_14	PF16677	N/A	N/A	DNA-packaging protein gp3	GP3_package
structural_annotation	UHGV-0096309_14	PF16677	N/A	N/A	N/A	N/A
PHROG	UHGV-0096309_17	phrog_256	330.6	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0096309_17	UniRef90_A0A1V5XFC1	569.0	0	Virulence-associated protein E	N/A
eggNOG-mapper	UHGV-0096309_17	1235793.C809_02292	245.0	0	Virulence-associated protein E	N/A
Pfam	UHGV-0096309_17	PF05272	N/A	N/A	Virulence-associated protein E-like domain	VapE-like_dom
COG	UHGV-0096309_17	COG5545	N/A	N/A	Predicted P-loop ATPase and inactivated derivatives	N/A
structural_annotation	UHGV-0096309_17	PF05272,MF_00016,NF005477,COG5545	N/A	N/A	N/A	N/A
KOfam	UHGV-0096309_18	K02316	69.8	4.3e-20	dnaG; DNA primase [EC:2.7.7.101]	N/A
PHROG	UHGV-0096309_18	phrog_11992	114.0	1.7e-33	N/A	unknown function
UniRef90	UHGV-0096309_18	UniRef90_A0A6L6LVV7	103.0	2.11e-24	DNA primase	N/A
eggNOG-mapper	UHGV-0096309_18	411902.CLOBOL_04301	97.8	6.29e-23	CHC2 zinc finger	N/A
PADLOC	UHGV-0096309_18	drt-cluster192	56.7	5.7e-16	DRT	DRT
Pfam	UHGV-0096309_18	PF01807	N/A	N/A	CHC2 zinc finger	zf-CHC2
COG	UHGV-0096309_18	COG0358	N/A	N/A	DNA primase (bacterial type)	N/A
structural_annotation	UHGV-0096309_18	PF01807,PF00401	N/A	N/A	N/A	N/A
PHROG	UHGV-0096309_19	phrog_3490	122.0	4.7e-36	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0096309_19	UniRef90_R6N0P8	214.0	0	ERCC4 domain-containing protein	N/A
eggNOG-mapper	UHGV-0096309_19	476272.RUMHYD_01740	172.0	0	ERCC4 domain	N/A
Pfam	UHGV-0096309_19	PF02732	N/A	N/A	ERCC4 domain	ERCC4
COG	UHGV-0096309_19	COG1948	N/A	N/A	ERCC4-type crossover junction endonuclease	N/A
structural_annotation	UHGV-0096309_19	PF02732,NF040956,COG1948	N/A	N/A	N/A	N/A
PHROG	UHGV-0096309_20	phrog_18107	72.2	9.6e-21	N/A	unknown function
eggNOG-mapper	UHGV-0096309_20	476272.RUMHYD_02831	159.0	0	N/A	N/A
structural_annotation	UHGV-0096309_20	PF05037	N/A	N/A	N/A	N/A
PHROG	UHGV-0096309_22	phrog_2872	223.8	0	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0096309_22	UniRef90_A0A8J6P193	265.0	0	AAA family ATPase	N/A
eggNOG-mapper	UHGV-0096309_22	1232453.BAIF02000010_gene3337	221.0	0	AAA domain	N/A
Pfam	UHGV-0096309_22	PF13479	N/A	N/A	AAA domain	AAA_24
structural_annotation	UHGV-0096309_22	PF13479,MF_00350,TIGR01618,COG0468	N/A	N/A	N/A	N/A
PHROG	UHGV-0096309_24	phrog_236	119.4	6.1e-35	nucleotide kinase	other
UniRef90	UHGV-0096309_24	UniRef90_A0A843F518	120.0	4.36e-34	N/A	N/A
eggNOG-mapper	UHGV-0096309_24	1118054.CAGW01000095_gene4680	102.0	9.38e-28	N/A	N/A
Pfam	UHGV-0096309_24	PF11753	N/A	N/A	N/A	DUF3310
PHROG	UHGV-0096309_26	phrog_799	199.2	0	DNA methyltransferase	other
UniRef90	UHGV-0096309_26	UniRef90_A0A414ZQZ4	277.0	0	NAD(P)-dependent oxidoreductase	N/A
eggNOG-mapper	UHGV-0096309_26	1123263.AUKY01000096_gene1823	248.0	0	DNA restriction-modification system	N/A
COG	UHGV-0096309_26	COG0827	N/A	N/A	Adenine-specific DNA N6-methylase	N/A
structural_annotation	UHGV-0096309_26	PF19587,MF_01872,NF011489,COG0286	N/A	N/A	N/A	N/A
PHROG	UHGV-0096309_29	phrog_229	122.8	2.7e-36	MazG-like pyrophosphatase	other
UniRef90	UHGV-0096309_29	UniRef90_D7GNT7	158.0	0	MazG nucleotide pyrophosphohydrolase domain	N/A
eggNOG-mapper	UHGV-0096309_29	428125.CLOLEP_01391	151.0	0	MazG nucleotide pyrophosphohydrolase domain	N/A
Pfam	UHGV-0096309_29	PF03819	N/A	N/A	MazG nucleotide pyrophosphohydrolase domain	MazG
COG	UHGV-0096309_29	COG1694	N/A	N/A	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	N/A
structural_annotation	UHGV-0096309_29	PF03819,MF_01020,NF001613,COG0140	N/A	N/A	N/A	N/A
PHROG	UHGV-0096309_34	phrog_3392	116.4	2.8e-34	N/A	unknown function
UniRef90	UHGV-0096309_34	UniRef90_A8AT45	104.0	1.38e-25	Gp21	N/A
eggNOG-mapper	UHGV-0096309_34	1217710.F969_00044	119.0	3.85e-30	N/A	N/A
PHROG	UHGV-0096309_37	phrog_10714	47.6	0.00000000000029	N/A	unknown function
PHROG	UHGV-0096309_40	phrog_757	191.2	0	DNA methyltransferase	other
UniRef90	UHGV-0096309_40	UniRef90_A0A417JTT5	304.0	0	DNA cytosine methyltransferase	N/A
eggNOG-mapper	UHGV-0096309_40	748224.HMPREF9436_03069	218.0	0	DNA (cytosine-5-)-methyltransferase activity	N/A
COG	UHGV-0096309_40	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0096309_40	PF00145,MF_01872,TIGR00675,COG0270	N/A	N/A	N/A	N/A
PHROG	UHGV-0096309_41	phrog_22529	95.0	5.3e-28	N/A	unknown function
UniRef90	UHGV-0096309_41	UniRef90_A0A3D0DJY9	92.4	8.52e-21	3D domain-containing protein (Fragment)	N/A
eggNOG-mapper	UHGV-0096309_41	1410622.JNKY01000010_gene1282	100.0	1.36e-23	3D domain	N/A
Pfam	UHGV-0096309_41	PF06725	N/A	N/A	3D domain	3D
COG	UHGV-0096309_41	COG3584	N/A	N/A	3D (Asp-Asp-Asp) domain, usually in lytic transglycosylases	N/A
structural_annotation	UHGV-0096309_41	PF06725,MF_02071,NF040670,COG3584	N/A	N/A	N/A	N/A
PHROG	UHGV-0096309_42	phrog_14105	48.5	4e-16	N/A	unknown function
eggNOG-mapper	UHGV-0096309_42	526218.Sterm_0811	63.2	0.000000019	dextransucrase activity	N/A
COG	UHGV-0096309_42	COG5263	N/A	N/A	Glucan-binding domain (YG repeat)	N/A
UniRef90	UHGV-0096309_44	UniRef90_A0A2A8VCA3	51.2	0.00000136	Transcriptional regulator	N/A
Pfam	UHGV-0096309_44	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0096309_44	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0096309_44	PF13560,TIGR03070,COG1396	N/A	N/A	N/A	N/A
UniRef90	UHGV-0096309_45	UniRef90_UPI000F0633F9	78.6	7.78e-18	DNA-binding protein	N/A
eggNOG-mapper	UHGV-0096309_45	693746.OBV_43260	76.6	7.74e-18	N/A	N/A
structural_annotation	UHGV-0096309_45	PF12728,TIGR01764,COG3311	N/A	N/A	N/A	N/A
KOfam	UHGV-0096309_47	K07729	51.8	0.00000000000002	K07729; putative transcriptional regulator	N/A
PHROG	UHGV-0096309_47	phrog_3	50.6	0.000000000000094	transcriptional repressor	transcription regulation
UniRef90	UHGV-0096309_47	UniRef90_D9SNQ4	60.8	0.0000000000658	Transcriptional regulator, XRE family	N/A
eggNOG-mapper	UHGV-0096309_47	592026.GCWU0000282_001622	62.4	0.0000000000557	N/A	N/A
PADLOC	UHGV-0096309_47	retron_type_VI_hth_cluster2_1	43.4	0.0000000000093	N/A	Retron
Pfam	UHGV-0096309_47	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0096309_47	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0096309_47	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0096309_48	phrog_2967	65.5	9.5e-19	transcriptional regulator	transcription regulation
UniRef90	UHGV-0096309_48	UniRef90_A0A1H8UMG2	105.0	1.1e-26	Cro/C1-type HTH DNA-binding domain-containing protein	N/A
eggNOG-mapper	UHGV-0096309_48	411490.ANACAC_00815	90.9	4.07e-21	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	N/A
Pfam	UHGV-0096309_48	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0096309_48	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-0096309_48	PF01381,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-0096309_50	phrog_33519	140.0	1.19993e-41	N/A	unknown function
eggNOG-mapper	UHGV-0096309_50	500633.CLOHIR_00738	110.0	7.42e-29	N/A	N/A
structural_annotation	UHGV-0096309_50	PF13958,NF010262,COG2337	N/A	N/A	N/A	N/A
UniRef90	UHGV-0096309_51	UniRef90_A0A8D9UHA6	64.3	0.00000000206	Helix-turn-helix XRE-family like protein	N/A
Pfam	UHGV-0096309_51	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
COG	UHGV-0096309_51	COG3620	N/A	N/A	Predicted transcriptional regulator, contains an XRE-type HTH domain (archaeal members contain CBS pair)	N/A
structural_annotation	UHGV-0096309_51	PF13443,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0096309_52	K14059	92.0	1.1e-26	int; integrase	N/A
PHROG	UHGV-0096309_52	phrog_1	114.8	1.1e-33	integrase	integration and excision
UniRef90	UHGV-0096309_52	UniRef90_UPI000F051A1D	461.0	0	tyrosine-type recombinase/integrase	N/A
eggNOG-mapper	UHGV-0096309_52	693746.OBV_43340	411.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0096309_52	PF14657	N/A	N/A	Arm DNA-binding domain	Arm-DNA-bind_4
Pfam	UHGV-0096309_52	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0096309_52	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0096309_52	PF00589,PF13495,MF_02055,TIGR02225,COG4974	N/A	N/A	N/A	N/A
KOfam	UHGV-0096309_53	K03616	40.4	0.000000000059	rnfB; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit B [EC:7.1.1.11 7.2.1.2]	N/A
UniRef90	UHGV-0096309_53	UniRef90_A0A3D4ECH4	495.0	0	4Fe-4S ferredoxin	N/A
eggNOG-mapper	UHGV-0096309_53	397290.C810_00030	179.0	0	4Fe-4S dicluster domain	N/A
Pfam	UHGV-0096309_53	PF00037	N/A	N/A	4Fe-4S binding domain	Fer4
NCBIFam	UHGV-0096309_53	NF038196.1	N/A	N/A	EFR1 family ferrodoxin	N/A
COG	UHGV-0096309_53	COG2768	N/A	N/A	N/A	N/A