UHGV-0097472 (vOTU-088665)

Viral Genome: UHGV-0097472

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0097472
vOTU ID	vOTU-088665
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_232398
Associated BioSample	SAMEA3708603
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	69.28 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9661
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	26.61
Jumbo phage	No

Genome content
Genome length (bp)	33,135
GC content	36.10%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	56
CDS density	90%
Average CDS length (bps)	534.11
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 69.28)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0097472_1	K06905	154.0	1.4013e-45	N/A	N/A
PHROG	UHGV-0097472_1	phrog_52	139.6	2.4e-41	tail protein	tail
UniRef90	UHGV-0097472_1	UniRef90_A7AY77	184.0	0	Phage late control gene D protein (GPD)	N/A
eggNOG-mapper	UHGV-0097472_1	411470.RUMGNA_00242	184.0	0	COG3500 Phage protein D	N/A
COG	UHGV-0097472_1	COG3500	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0097472_1	PF05954,NF033848,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-0097472_2	phrog_46	41.8	0.000000000016	tail protein	tail
UniRef90	UHGV-0097472_2	UniRef90_A0A3E2TEL1	94.0	6.35e-24	Phage tail protein	N/A
eggNOG-mapper	UHGV-0097472_2	572544.Ilyop_1028	64.3	0.00000000000058	Phage Tail Protein X	N/A
COG	UHGV-0097472_2	COG5004	N/A	N/A	P2-like prophage tail protein X	N/A
structural_annotation	UHGV-0097472_2	PF05489,TIGR02899,COG5004	N/A	N/A	N/A	N/A
PHROG	UHGV-0097472_3	phrog_991	288.1	0	tail length tape measure protein	tail
UniRef90	UHGV-0097472_3	UniRef90_UPI0003F8B54C	362.0	0	phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-0097472_3	887325.HMPREF0381_0396	390.0	0	Phage-related minor tail protein	N/A
Pfam	UHGV-0097472_3	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-0097472_3	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-0097472_3	COG5283	N/A	N/A	Phage-related tail protein	N/A
structural_annotation	UHGV-0097472_3	PF10145,TIGR01760,COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-0097472_4	phrog_3140	87.7	1.7e-25	tail assembly chaperone	tail
UniRef90	UHGV-0097472_4	UniRef90_A0A0D8ID76	100.0	1.21e-25	Mu-like prophage FluMu protein gp41	N/A
eggNOG-mapper	UHGV-0097472_4	478749.BRYFOR_07546	97.1	1.24e-24	Phage tail assembly chaperone proteins, E, or 41 or 14	N/A
structural_annotation	UHGV-0097472_4	PF10109	N/A	N/A	N/A	N/A
KOfam	UHGV-0097472_5	K06908	115.1	7.5e-34	N/A	N/A
PHROG	UHGV-0097472_5	phrog_55	135.4	2.5e-40	head closure	connector
UniRef90	UHGV-0097472_5	UniRef90_A0A2N2CRP9	197.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-0097472_5	887325.HMPREF0381_0394	189.0	0	Phage tail tube protein FII	N/A
Pfam	UHGV-0097472_5	PF04985	N/A	N/A	Phage tail tube protein FII	Phage_tube
COG	UHGV-0097472_5	COG3498	N/A	N/A	Phage tail tube protein FII	N/A
structural_annotation	UHGV-0097472_5	PF04985,TIGR01611,COG3498	N/A	N/A	N/A	N/A
KOfam	UHGV-0097472_6	K06907	127.4	1.1e-37	N/A	N/A
PHROG	UHGV-0097472_6	phrog_23	182.1	0	tail sheath	tail
UniRef90	UHGV-0097472_6	UniRef90_A0A2N2CRL0	472.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-0097472_6	887325.HMPREF0381_0393	439.0	0	COG3497 Phage tail sheath protein FI	N/A
COG	UHGV-0097472_6	COG3497	N/A	N/A	Phage tail sheath protein FI	N/A
structural_annotation	UHGV-0097472_6	PF10758,TIGR03355,COG3497	N/A	N/A	N/A	N/A
PHROG	UHGV-0097472_7	phrog_2581	82.8	3.5e-24	virion structural protein	head and packaging
eggNOG-mapper	UHGV-0097472_7	478749.BRYFOR_07542	86.7	2.16e-19	N/A	N/A
structural_annotation	UHGV-0097472_7	PF08873	N/A	N/A	N/A	N/A
PHROG	UHGV-0097472_8	phrog_27	82.1	9.7e-24	tail completion or Neck1 protein	connector
UniRef90	UHGV-0097472_8	UniRef90_UPI001C3BDE3A	76.3	0.000000000000105	Phage tail protein	N/A
eggNOG-mapper	UHGV-0097472_8	478749.BRYFOR_07541	105.0	1.39e-25	N/A	N/A
Pfam	UHGV-0097472_8	PF06763	N/A	N/A	Prophage minor tail protein Z (GPZ)	Minor_tail_Z
structural_annotation	UHGV-0097472_8	PF06763	N/A	N/A	N/A	N/A
PHROG	UHGV-0097472_9	phrog_2551	96.1	2.8e-28	minor tail protein	tail
eggNOG-mapper	UHGV-0097472_9	478749.BRYFOR_07540	96.7	1.46e-24	ATP-binding sugar transporter from pro-phage	N/A
structural_annotation	UHGV-0097472_9	PF13856	N/A	N/A	N/A	N/A
PHROG	UHGV-0097472_11	phrog_122	67.8	1.5e-19	head decoration	head and packaging
UniRef90	UHGV-0097472_11	UniRef90_UPI001D0EEDC7	94.0	9.18e-23	N/A	N/A
eggNOG-mapper	UHGV-0097472_11	411470.RUMGNA_00230	64.3	0.00000000000668	N/A	N/A
Pfam	UHGV-0097472_11	PF09956	N/A	N/A	N/A	DUF2190
COG	UHGV-0097472_11	COG5471	N/A	N/A	Predicted phage recombinase, RecA/RadA family	N/A
structural_annotation	UHGV-0097472_11	PF09956,COG5471	N/A	N/A	N/A	N/A
PHROG	UHGV-0097472_12	phrog_4523	324.5	0	major head and protease protein	head and packaging
UniRef90	UHGV-0097472_12	UniRef90_A0A4S2AAE7	496.0	0	Mu-like_gpT domain-containing protein	N/A
eggNOG-mapper	UHGV-0097472_12	478749.BRYFOR_07537	482.0	0	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides	N/A
Pfam	UHGV-0097472_12	PF10124	N/A	N/A	Mu-like prophage major head subunit gpT	Mu-like_gpT
COG	UHGV-0097472_12	COG3087	N/A	N/A	Cell division protein FtsN	N/A
structural_annotation	UHGV-0097472_12	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-0097472_13	K06904	44.8	0.0000000000024	N/A	N/A
PHROG	UHGV-0097472_13	phrog_4523	149.5	2.66247e-44	major head and protease protein	head and packaging
UniRef90	UHGV-0097472_13	UniRef90_E5VKD9	230.0	0	Caudovirus prohead protease	N/A
eggNOG-mapper	UHGV-0097472_13	1235835.C814_01181	217.0	0	Phage prohead protease, HK97 family	N/A
Pfam	UHGV-0097472_13	PF04586	N/A	N/A	Caudovirus prohead serine protease	Peptidase_S78
COG	UHGV-0097472_13	COG3740	N/A	N/A	Phage head maturation protease	N/A
structural_annotation	UHGV-0097472_13	PF04586,TIGR01543,COG3740	N/A	N/A	N/A	N/A
PHROG	UHGV-0097472_14	phrog_21	276.4	0	portal protein	head and packaging
UniRef90	UHGV-0097472_14	UniRef90_A0A3P6JS84	601.0	0	Phage portal protein, lambda family	N/A
eggNOG-mapper	UHGV-0097472_14	478749.BRYFOR_07535	589.0	0	Phage portal protein, lambda family	N/A
Pfam	UHGV-0097472_14	PF05136	N/A	N/A	Phage portal protein, lambda family	Phage_portal_2
NCBIFam	UHGV-0097472_14	TIGR01539.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0097472_14	COG5511	N/A	N/A	Phage capsid protein	N/A
structural_annotation	UHGV-0097472_14	PF05136,MF_04135,TIGR01539,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0097472_15	phrog_118	54.6	0.0000000000000014	head-tail adaptor	connector
UniRef90	UHGV-0097472_15	UniRef90_A0A3D5LSK8	84.0	1.73e-19	Peptidylprolyl isomerase	N/A
eggNOG-mapper	UHGV-0097472_15	1415774.U728_497	71.6	0.00000000000000196	N/A	N/A
structural_annotation	UHGV-0097472_15	PF19645	N/A	N/A	N/A	N/A
KOfam	UHGV-0097472_16	K21512	379.9	0	gpA; terminase, large subunit [EC:3.1.21.4]	N/A
PHROG	UHGV-0097472_16	phrog_15	488.1	0	terminase large subunit	head and packaging
UniRef90	UHGV-0097472_16	UniRef90_A8SB64	832.0	0	Phage terminase large subunit (GpA)	N/A
eggNOG-mapper	UHGV-0097472_16	887325.HMPREF0381_0382	798.0	0	Phage terminase large subunit (GpA)	N/A
Pfam	UHGV-0097472_16	PF05876	N/A	N/A	Phage terminase large subunit gpA, ATPase domain	GpA_ATPase
Pfam	UHGV-0097472_16	PF20454	N/A	N/A	Terminase large subunit gpA, endonuclease domain	GpA_nuclease
COG	UHGV-0097472_16	COG5525	N/A	N/A	Phage terminase, large subunit GpA	N/A
HAMAP	UHGV-0097472_16	MF_04144	N/A	N/A	Terminase, large subunit	N/A
structural_annotation	UHGV-0097472_16	PF05876,PF20454,MF_04144,TIGR01547,COG5525	N/A	N/A	N/A	N/A
PHROG	UHGV-0097472_17	phrog_57	90.0	4.2e-26	terminase small subunit	head and packaging
UniRef90	UHGV-0097472_17	UniRef90_E5VKE3	182.0	0	SLIT-ROBO Rho GTPase-activating protein 3	N/A
eggNOG-mapper	UHGV-0097472_17	478749.BRYFOR_07532	195.0	0	N/A	N/A
structural_annotation	UHGV-0097472_17	PF07471,TIGR01764,COG4220	N/A	N/A	N/A	N/A
PHROG	UHGV-0097472_18	phrog_24386	132.3	3.5e-39	N/A	unknown function
eggNOG-mapper	UHGV-0097472_18	1408312.JNJS01000008_gene657	126.0	7.11e-36	phosphatase activity	N/A
COG	UHGV-0097472_18	COG0561	N/A	N/A	Hydroxymethylpyrimidine pyrophosphatase and other HAD family phosphatases	N/A
eggNOG-mapper	UHGV-0097472_20	397290.C810_01492	56.6	0.0000000744	N/A	N/A
PHROG	UHGV-0097472_22	phrog_4643	117.6	1.1e-34	N/A	unknown function
PHROG	UHGV-0097472_25	phrog_2600	127.6	1.3e-37	N/A	unknown function
eggNOG-mapper	UHGV-0097472_25	742740.HMPREF9474_03130	263.0	0	N/A	N/A
PHROG	UHGV-0097472_26	phrog_36	47.8	0.0000000000003	transcriptional regulator	transcription regulation
UniRef90	UHGV-0097472_26	UniRef90_A0A7U9S1Q6	104.0	2.04e-25	Sigma70_r4_2 domain-containing protein	N/A
eggNOG-mapper	UHGV-0097472_26	478749.BRYFOR_07530	118.0	1.82e-31	N/A	N/A
Pfam	UHGV-0097472_26	PF04545	N/A	N/A	Sigma-70, region 4	Sigma70_r4
structural_annotation	UHGV-0097472_26	PF07374,MF_00245,TIGR02984,COG2739	N/A	N/A	N/A	N/A
PHROG	UHGV-0097472_27	phrog_229	114.2	1.2e-33	MazG-like pyrophosphatase	other
UniRef90	UHGV-0097472_27	UniRef90_UPI001C0EF10D	136.0	1.47e-39	nucleoside triphosphate pyrophosphohydrolase family protein	N/A
eggNOG-mapper	UHGV-0097472_27	428125.CLOLEP_01391	120.0	8.88e-34	MazG nucleotide pyrophosphohydrolase domain	N/A
Pfam	UHGV-0097472_27	PF03819	N/A	N/A	MazG nucleotide pyrophosphohydrolase domain	MazG
COG	UHGV-0097472_27	COG1694	N/A	N/A	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	N/A
structural_annotation	UHGV-0097472_27	PF03819,MF_01020,NF001613,COG0140	N/A	N/A	N/A	N/A
Pfam	UHGV-0097472_28	PF13936	N/A	N/A	Helix-turn-helix domain	HTH_38
PHROG	UHGV-0097472_29	phrog_17690	84.4	1.2e-24	N/A	unknown function
UniRef90	UHGV-0097472_29	UniRef90_A0A6L5XWF4	80.5	3.11e-17	3-dehydroquinate synthase	N/A
eggNOG-mapper	UHGV-0097472_29	33035.JPJF01000123_gene2433	84.7	1.2e-19	N/A	N/A
KOfam	UHGV-0097472_30	K03111	135.2	8.1e-40	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0097472_30	phrog_44	133.4	1.7e-39	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0097472_30	UniRef90_UPI00196118A2	170.0	0	single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0097472_30	97138.C820_02339	159.0	0	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-0097472_30	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0097472_30	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0097472_30	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0097472_30	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0097472_30	PF00436,MF_00984,NF005580,COG0629	N/A	N/A	N/A	N/A
KOfam	UHGV-0097472_32	K03427	54.5	0.0000000000000016	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	N/A
PHROG	UHGV-0097472_32	phrog_5696	216.4	0	N/A	unknown function
UniRef90	UHGV-0097472_32	UniRef90_A0A316QTS6	239.0	0	N6_Mtase domain-containing protein	N/A
eggNOG-mapper	UHGV-0097472_32	395019.Bmul_5588	159.0	1.05097e-43	N-6 DNA Methylase	N/A
Pfam	UHGV-0097472_32	PF02384	N/A	N/A	N-6 DNA Methylase	N6_Mtase
COG	UHGV-0097472_32	COG0286	N/A	N/A	Type I restriction-modification system, DNA methylase subunit	N/A
structural_annotation	UHGV-0097472_32	PF05185,TIGR00497	N/A	N/A	N/A	N/A
KOfam	UHGV-0097472_33	K04763	177.3	0	xerD; integrase/recombinase XerD	N/A
PHROG	UHGV-0097472_33	phrog_1	109.6	4.4e-32	integrase	integration and excision
UniRef90	UHGV-0097472_33	UniRef90_A0A3D0XCX4	374.0	0	Integrase	N/A
eggNOG-mapper	UHGV-0097472_33	883096.HMPREF9699_01296	207.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0097472_33	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0097472_33	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0097472_33	PF00589,PF13495,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-0097472_35	phrog_24518	69.2	3.1e-20	N/A	unknown function
KOfam	UHGV-0097472_36	K03700	84.6	1.6e-24	recU; recombination protein U	N/A
PHROG	UHGV-0097472_36	phrog_843	152.3	1.4013e-45	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0097472_36	UniRef90_UPI001C123EEF	192.0	0	Holliday junction resolvase RecU	N/A
eggNOG-mapper	UHGV-0097472_36	1151292.QEW_0324	152.0	2.38221e-44	Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation	N/A
Pfam	UHGV-0097472_36	PF03838	N/A	N/A	Recombination protein U	RecU
COG	UHGV-0097472_36	COG3331	N/A	N/A	Penicillin-binding protein-related factor A, putative recombinase	N/A
structural_annotation	UHGV-0097472_36	PF03838,MF_00130,NF002581,COG3331	N/A	N/A	N/A	N/A
PHROG	UHGV-0097472_37	phrog_3584	175.6	0	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0097472_37	610130.Closa_0713	157.0	1.82169e-44	N/A	N/A
structural_annotation	UHGV-0097472_37	PF11726	N/A	N/A	N/A	N/A
PHROG	UHGV-0097472_44	phrog_16397	132.8	6.10001e-40	N/A	unknown function
eggNOG-mapper	UHGV-0097472_44	742740.HMPREF9474_04316	116.0	3.37e-33	N/A	N/A
KOfam	UHGV-0097472_46	K22300	53.9	0.0000000000000045	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0097472_46	phrog_8	40.0	0.000000000029	transcriptional regulator	transcription regulation
UniRef90	UHGV-0097472_46	UniRef90_C0D708	98.2	1.23e-23	DNA-binding helix-turn-helix protein	N/A
eggNOG-mapper	UHGV-0097472_46	1235800.C819_02266	89.0	9.26e-21	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0097472_46	PF12844	N/A	N/A	Helix-turn-helix domain	HTH_19
COG	UHGV-0097472_46	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0097472_46	PF01381,MF_00535,NF007257,COG1476	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0097472_47	1235835.C814_03388	94.4	2.85e-20	N/A	N/A
UniRef90	UHGV-0097472_48	UniRef90_A0A1Q6KSP3	221.0	0	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0097472_48	742765.HMPREF9457_02739	191.0	0	N/A	N/A
structural_annotation	UHGV-0097472_48	PF12844,PF16452,MF_00015,NF041951,NF007621,COG2932	N/A	N/A	N/A	N/A
KOfam	UHGV-0097472_50	K03496	240.0	0	parA, soj; chromosome partitioning protein	N/A
PHROG	UHGV-0097472_50	phrog_164	164.2	0	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0097472_50	UniRef90_R9LTY3	365.0	0	AAA_31 domain-containing protein	N/A
eggNOG-mapper	UHGV-0097472_50	1235797.C816_04288	365.0	0	Anion-transporting ATPase	N/A
Pfam	UHGV-0097472_50	PF13614	N/A	N/A	AAA domain	AAA_31
COG	UHGV-0097472_50	COG1192	N/A	N/A	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	N/A
structural_annotation	UHGV-0097472_50	PF13614,MF_00533,NF010443,COG1192	N/A	N/A	N/A	N/A
UniRef90	UHGV-0097472_51	UniRef90_A0A0H5Q6C4	597.0	0	HTH_11 domain-containing protein	N/A
eggNOG-mapper	UHGV-0097472_51	1507.HMPREF0262_00498	577.0	0	N/A	N/A
PHROG	UHGV-0097472_55	phrog_31631	58.1	1.1e-16	N/A	unknown function