UHGV-0097489 (vOTU-161730)

Viral Genome: UHGV-0097489

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0097489
vOTU ID	vOTU-161730
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_206356
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	63.86 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9803
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	35.62
Jumbo phage	No

Genome content
Genome length (bp)	20,539
GC content	51.83%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	28
CDS density	95%
Average CDS length (bps)	698.79
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 63.86)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0097489_3	phrog_1558	54.0	4.3e-21	N/A	unknown function
UniRef90	UHGV-0097489_3	UniRef90_A0A316RAK3	214.0	0	Sigma70_r4_2 domain-containing protein	N/A
eggNOG-mapper	UHGV-0097489_3	411459.RUMOBE_01740	60.5	0.000000000912	N/A	N/A
Pfam	UHGV-0097489_3	PF08281	N/A	N/A	Sigma-70, region 4	Sigma70_r4_2
structural_annotation	UHGV-0097489_3	PF06530,NF008895,COG1595	N/A	N/A	N/A	N/A
PHROG	UHGV-0097489_4	phrog_144	94.3	1.2e-27	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0097489_4	UniRef90_A0A844FGQ3	111.0	1.7e-28	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0097489_4	411459.RUMOBE_01739	109.0	1.03e-28	N/A	N/A
PHROG	UHGV-0097489_5	phrog_83	64.7	1.8e-18	terminase small subunit	head and packaging
UniRef90	UHGV-0097489_5	UniRef90_A0A316RD76	318.0	0	Phage terminase small subunit P27 family	N/A
eggNOG-mapper	UHGV-0097489_5	411468.CLOSCI_01487	125.0	4.14e-34	Phage terminase, small subunit	N/A
Pfam	UHGV-0097489_5	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
COG	UHGV-0097489_5	COG3747	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-0097489_5	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-0097489_6	phrog_9	359.8	0	terminase large subunit	head and packaging
UniRef90	UHGV-0097489_6	UniRef90_A0A316R7M0	1156.0	0	Terminase large subunit	N/A
eggNOG-mapper	UHGV-0097489_6	411459.RUMOBE_01737	713.0	0	N/A	N/A
Pfam	UHGV-0097489_6	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0097489_6	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0097489_6	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0097489_6	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0097489_7	phrog_12	301.6	0	portal protein	head and packaging
UniRef90	UHGV-0097489_7	UniRef90_A0A316R7D3	842.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0097489_7	411459.RUMOBE_01735	444.0	0	N/A	N/A
Pfam	UHGV-0097489_7	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0097489_7	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0097489_7	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0097489_7	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-0097489_8	K01358	104.0	2.4e-30	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0097489_8	phrog_94	174.1	0	head maturation protease	head and packaging
UniRef90	UHGV-0097489_8	UniRef90_A0A316R8I3	488.0	0	Clp protease	N/A
eggNOG-mapper	UHGV-0097489_8	742741.HMPREF9475_00424	197.0	0	Clp protease	N/A
Pfam	UHGV-0097489_8	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0097489_8	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-0097489_8	PF00574,MF_00444,NF011090,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-0097489_9	phrog_10	186.9	0	major head protein	head and packaging
UniRef90	UHGV-0097489_9	UniRef90_A0A316RM35	687.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0097489_9	411459.RUMOBE_01733	308.0	0	phage phi-C31 gp36 major capsid-like protein	N/A
Pfam	UHGV-0097489_9	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0097489_9	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0097489_9	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0097489_9	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
UniRef90	UHGV-0097489_10	UniRef90_A0A316R9F5	187.0	0	Phage gp6-like head-tail connector protein	N/A
eggNOG-mapper	UHGV-0097489_10	411459.RUMOBE_01732	76.6	4.19e-17	N/A	N/A
Pfam	UHGV-0097489_10	PF05135	N/A	N/A	Phage gp6-like head-tail connector protein	Phage_connect_1
NCBIFam	UHGV-0097489_10	TIGR01560.2	N/A	N/A	head-tail connector protein	N/A
structural_annotation	UHGV-0097489_10	PF05135,TIGR01560	N/A	N/A	N/A	N/A
UniRef90	UHGV-0097489_11	UniRef90_A0A316R8D9	232.0	0	Phage head-tail adapter protein	N/A
eggNOG-mapper	UHGV-0097489_11	195103.CPF_1582	68.9	0.000000000000116	Phage head-tail adaptor	N/A
Pfam	UHGV-0097489_11	PF05521	N/A	N/A	Phage head-tail joining protein	Phage_H_T_join
NCBIFam	UHGV-0097489_11	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
structural_annotation	UHGV-0097489_11	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0097489_12	phrog_5	42.5	0.000000000014	tail completion or Neck1 protein	connector
UniRef90	UHGV-0097489_12	UniRef90_A0A174MCG9	96.3	1.44e-22	Phage protein, HK97 gp10 family	N/A
eggNOG-mapper	UHGV-0097489_12	411459.RUMOBE_01730	96.3	2.41e-23	Phage protein, HK97 gp10 family	N/A
NCBIFam	UHGV-0097489_12	TIGR01725.1	N/A	N/A	HK97-gp10 family putative phage morphogenesis protein	N/A
structural_annotation	UHGV-0097489_12	PF04883,TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-0097489_13	phrog_78	51.4	0.000000000000023	tail terminator	connector
eggNOG-mapper	UHGV-0097489_13	411468.CLOSCI_01495	95.1	1.44e-23	N/A	N/A
structural_annotation	UHGV-0097489_13	PF05657,NF040576,COG3167	N/A	N/A	N/A	N/A
PHROG	UHGV-0097489_14	phrog_88	137.9	5.29999e-41	major tail protein	tail
UniRef90	UHGV-0097489_14	UniRef90_A0A316RAJ2	406.0	0	Major tail protein	N/A
eggNOG-mapper	UHGV-0097489_14	411459.RUMOBE_01728	229.0	0	phage major tail protein, phi13 family	N/A
NCBIFam	UHGV-0097489_14	TIGR01603.1	N/A	N/A	major tail protein	N/A
COG	UHGV-0097489_14	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0097489_14	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-0097489_15	phrog_13494	58.4	1.1e-16	N/A	unknown function
eggNOG-mapper	UHGV-0097489_15	742741.HMPREF9475_00431	52.8	0.000000251	N/A	N/A
PHROG	UHGV-0097489_16	phrog_25901	75.2	1.4e-21	N/A	unknown function
eggNOG-mapper	UHGV-0097489_16	411468.CLOSCI_01498	67.4	0.00000000000462	N/A	N/A
KOfam	UHGV-0097489_17	K10421	45.7	0.00000000000036	CLIP1, RSN; CAP-Gly domain-containing linker protein 1	N/A
PHROG	UHGV-0097489_17	phrog_1533	517.9	0	tail length tape measure protein	tail
UniRef90	UHGV-0097489_17	UniRef90_A0A316R7C3	1130.0	0	Phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-0097489_17	35241.Q9AYV8_BPTU2	382.0	0	peptidoglycan catabolic process	N/A
Pfam	UHGV-0097489_17	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-0097489_17	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
PHROG	UHGV-0097489_18	phrog_33	71.3	2.5e-20	distal tail protein Dit	tail
UniRef90	UHGV-0097489_18	UniRef90_A0A3E3AF06	103.0	3.63e-23	Phage tail protein	N/A
eggNOG-mapper	UHGV-0097489_18	1232452.BAIB02000007_gene1615	145.0	3.17999e-40	phage tail	N/A
Pfam	UHGV-0097489_18	PF05709	N/A	N/A	Phage tail protein RIFT-related domain	Sipho_tail
NCBIFam	UHGV-0097489_18	TIGR01633.1	N/A	N/A	distal tail protein Dit	N/A
COG	UHGV-0097489_18	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0097489_18	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0097489_19	phrog_13289	174.2	0	tail protein	tail
UniRef90	UHGV-0097489_19	UniRef90_A0A316RM27	1019.0	0	Prophage_tail domain-containing protein	N/A
eggNOG-mapper	UHGV-0097489_19	1280689.AUJC01000011_gene1532	116.0	7.53e-25	Prophage endopeptidase tail	N/A
Pfam	UHGV-0097489_19	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0097489_19	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0097489_19	COG4926	N/A	N/A	Phage-related protein	N/A
UniRef90	UHGV-0097489_20	UniRef90_A0A316R9D9	1111.0	0	BppU_N domain-containing protein	N/A
eggNOG-mapper	UHGV-0097489_20	641107.CDLVIII_4353	57.8	0.000000915	N/A	N/A
structural_annotation	UHGV-0097489_20	PF00386,NF033147	N/A	N/A	N/A	N/A
UniRef90	UHGV-0097489_21	UniRef90_R6J123	115.0	1.06e-32	ATP synthase B chain	N/A
PHROG	UHGV-0097489_22	phrog_4105	78.9	5e-23	N/A	unknown function
eggNOG-mapper	UHGV-0097489_22	610130.Closa_0762	73.2	0.00000000000000357	N/A	N/A
PHROG	UHGV-0097489_23	phrog_263	90.8	8.3e-27	holin	lysis
UniRef90	UHGV-0097489_23	UniRef90_A0A316RBA3	156.0	0	Phage holin	N/A
eggNOG-mapper	UHGV-0097489_23	1121344.JHZO01000003_gene952	77.0	2.39e-17	SPP1 phage holin	N/A
Pfam	UHGV-0097489_23	PF04688	N/A	N/A	SPP1 phage holin	Holin_SPP1
NCBIFam	UHGV-0097489_23	TIGR01592.1	N/A	N/A	phage holin	N/A
structural_annotation	UHGV-0097489_23	PF04688	N/A	N/A	N/A	N/A
UniRef90	UHGV-0097489_24	UniRef90_R6J3S0	572.0	0	Peptidase_C39_2 domain-containing protein	N/A
Pfam	UHGV-0097489_24	PF13529	N/A	N/A	Peptidase_C39 like family	Peptidase_C39_2
COG	UHGV-0097489_24	COG4990	N/A	N/A	Predicted cysteine peptidase, C39 family	N/A
structural_annotation	UHGV-0097489_24	PF11814,NF033920,COG4990	N/A	N/A	N/A	N/A
UniRef90	UHGV-0097489_26	UniRef90_A0A315YPS7	69.3	0.00000000000509	Helix-turn-helix protein	N/A
eggNOG-mapper	UHGV-0097489_26	471875.RUMLAC_02311	55.1	0.0000000345	Helix-turn-helix XRE-family like proteins	N/A
COG	UHGV-0097489_26	COG2944	N/A	N/A	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	N/A