UHGV-0099557 (vOTU-022065)

Viral Genome: UHGV-0099557

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0099557
vOTU ID	vOTU-022065
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_222107
Associated BioSample	SAMEA3541472
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	67.2 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9749
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	13.39
Jumbo phage	No

Genome content
Genome length (bp)	26,560
GC content	43.70%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	36
CDS density	91%
Average CDS length (bps)	670.67
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 67.2)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0099557_1	phrog_199	64.4	1.5e-18	holin	lysis
UniRef90	UHGV-0099557_1	UniRef90_A0A417CRV5	247.0	0	Holin	N/A
eggNOG-mapper	UHGV-0099557_1	411460.RUMTOR_02100	194.0	0	N/A	N/A
Pfam	UHGV-0099557_1	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-0099557_1	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
UniRef90	UHGV-0099557_2	UniRef90_A0A417CS53	991.0	0	Peptidase S74 domain-containing protein	N/A
eggNOG-mapper	UHGV-0099557_2	411459.RUMOBE_00913	76.6	0.0000000000049	N/A	N/A
Pfam	UHGV-0099557_2	PF13884	N/A	N/A	Chaperone of endosialidase	Peptidase_S74
KOfam	UHGV-0099557_4	K03733	188.8	0	xerC; integrase/recombinase XerC	N/A
PHROG	UHGV-0099557_4	phrog_1	157.4	0	integrase	integration and excision
UniRef90	UHGV-0099557_4	UniRef90_A0A1C5YVZ3	645.0	0	Tyrosine recombinase XerD	N/A
eggNOG-mapper	UHGV-0099557_4	411459.RUMOBE_00920	437.0	0	Phage integrase, N-terminal SAM-like domain	N/A
Pfam	UHGV-0099557_4	PF13495	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
Pfam	UHGV-0099557_4	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0099557_4	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0099557_4	PF00589,PF02899,MF_01807,TIGR02224,COG4973	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0099557_5	411459.RUMOBE_04220	95.1	1.27e-20	Histidine kinase	N/A
COG	UHGV-0099557_5	COG0642	N/A	N/A	Signal transduction histidine kinase	N/A
PHROG	UHGV-0099557_6	phrog_16267	125.5	0	N/A	unknown function
UniRef90	UHGV-0099557_6	UniRef90_UPI00073E79CE	766.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-0099557_6	411459.RUMOBE_00923	740.0	0	N/A	N/A
COG	UHGV-0099557_6	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0099557_6	PF05113,PF02010,NF033848,NF011764,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-0099557_7	phrog_1401	67.7	1.8e-19	N/A	unknown function
UniRef90	UHGV-0099557_7	UniRef90_A0A7C6P910	93.6	4.19e-22	N/A	N/A
eggNOG-mapper	UHGV-0099557_7	1232453.BAIF02000058_gene1640	110.0	1.59e-29	N/A	N/A
structural_annotation	UHGV-0099557_7	PF07761	N/A	N/A	N/A	N/A
PHROG	UHGV-0099557_8	phrog_2566	73.6	2.1e-21	N/A	unknown function
eggNOG-mapper	UHGV-0099557_8	203120.LEUM_1633	52.8	0.0000000443	N/A	N/A
PHROG	UHGV-0099557_9	phrog_1194	76.6	2.9e-22	N/A	unknown function
eggNOG-mapper	UHGV-0099557_9	33035.JPJF01000093_gene2242	152.0	0	N/A	N/A
structural_annotation	UHGV-0099557_9	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0099557_10	phrog_1535	401.5	0	tail length tape measure protein	tail
UniRef90	UHGV-0099557_10	UniRef90_A0A1C5RGR7	894.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0099557_10	33035.JPJF01000093_gene2243	778.0	0	phage tail tape measure protein	N/A
COG	UHGV-0099557_10	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-0099557_10	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-0099557_12	phrog_8355	109.3	1.1e-32	N/A	unknown function
UniRef90	UHGV-0099557_12	UniRef90_UPI001C031F13	110.0	7.47e-30	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-0099557_12	33035.JPJF01000093_gene2244	107.0	1.71e-29	N/A	N/A
PHROG	UHGV-0099557_13	phrog_8300	93.6	1.5e-27	N/A	unknown function
eggNOG-mapper	UHGV-0099557_13	33035.JPJF01000093_gene2245	95.1	2.83e-24	N/A	N/A
structural_annotation	UHGV-0099557_13	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0099557_14	phrog_820	133.7	8.4e-40	major tail protein	tail
eggNOG-mapper	UHGV-0099557_14	1282664.H354_06691	219.0	0	N/A	N/A
structural_annotation	UHGV-0099557_14	PF06199,TIGR02241,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0099557_15	phrog_2595	79.1	5.1e-23	head-tail connector protein	connector
UniRef90	UHGV-0099557_15	UniRef90_UPI001C00BA9C	182.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-0099557_15	1123263.AUKY01000051_gene1075	96.3	1e-23	N/A	N/A
Pfam	UHGV-0099557_15	PF12691	N/A	N/A	Bacteriophage minor capsid protein	Minor_capsid_3
structural_annotation	UHGV-0099557_15	PF12691,COG5003	N/A	N/A	N/A	N/A
PHROG	UHGV-0099557_16	phrog_556	59.5	5.9e-17	minor head protein	head and packaging
eggNOG-mapper	UHGV-0099557_16	742740.HMPREF9474_03509	177.0	0	N/A	N/A
PHROG	UHGV-0099557_17	phrog_8710	141.5	2.20004e-42	N/A	unknown function
eggNOG-mapper	UHGV-0099557_17	1304866.K413DRAFT_0782	151.0	0	N/A	N/A
structural_annotation	UHGV-0099557_17	PF10665,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0099557_18	phrog_541	86.0	3.9e-25	head-tail adaptor	connector
eggNOG-mapper	UHGV-0099557_18	1298920.KI911353_gene4848	202.0	0	N/A	N/A
PHROG	UHGV-0099557_19	phrog_422	277.6	0	major head protein	head and packaging
UniRef90	UHGV-0099557_19	UniRef90_A0A414EG86	618.0	0	Phage capsid protein	N/A
eggNOG-mapper	UHGV-0099557_19	663278.Ethha_1589	392.0	0	N/A	N/A
structural_annotation	UHGV-0099557_19	PF19821,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0099557_20	phrog_2303	127.6	1.1e-37	head scaffolding protein	head and packaging
eggNOG-mapper	UHGV-0099557_20	483218.BACPEC_01156	194.0	0	N/A	N/A
PHROG	UHGV-0099557_23	phrog_478	115.3	3e-34	site-specific recombination directionality factor RDF	integration and excision
UniRef90	UHGV-0099557_23	UniRef90_R6R5K5	142.0	4.96004e-41	Protein 64 protein	N/A
eggNOG-mapper	UHGV-0099557_23	1111121.HMPREF1247_0834	138.0	3.11e-40	N/A	N/A
PHROG	UHGV-0099557_24	phrog_918	129.6	7e-39	N/A	unknown function
UniRef90	UHGV-0099557_24	UniRef90_UPI000E468F85	135.0	8.57001e-40	N/A	N/A
eggNOG-mapper	UHGV-0099557_24	1140001.I571_01827	127.0	1.52e-37	N/A	N/A
Pfam	UHGV-0099557_24	PF19791	N/A	N/A	N/A	DUF6275
structural_annotation	UHGV-0099557_24	PF19791	N/A	N/A	N/A	N/A
PHROG	UHGV-0099557_25	phrog_1048	180.8	0	N/A	unknown function
UniRef90	UHGV-0099557_25	UniRef90_UPI001D0240A6	318.0	0	N/A	N/A
eggNOG-mapper	UHGV-0099557_25	457412.RSAG_01107	291.0	0	N/A	N/A
Pfam	UHGV-0099557_25	PF11195	N/A	N/A	N/A	DUF2829
dbAPIS	UHGV-0099557_25	APIS029	N/A	N/A	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	N/A
structural_annotation	UHGV-0099557_25	PF11195	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0099557_26	PF11344	N/A	N/A	N/A	N/A
PHROG	UHGV-0099557_27	phrog_581	252.0	0	minor head protein	head and packaging
UniRef90	UHGV-0099557_27	UniRef90_A0A1C5PIA8	773.0	0	Phage minor capsid protein 2	N/A
eggNOG-mapper	UHGV-0099557_27	33035.JPJF01000093_gene2255	500.0	0	N/A	N/A
Pfam	UHGV-0099557_27	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0099557_27	COG5585	N/A	N/A	Putative phage head morphogenesis protein, F of phage Mu or gp7 of SPP1	N/A
structural_annotation	UHGV-0099557_27	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-0099557_28	phrog_533	297.5	0	portal protein	head and packaging
UniRef90	UHGV-0099557_28	UniRef90_A0A1C5YZW6	1079.0	0	Phage portal protein, putative, A118 family	N/A
eggNOG-mapper	UHGV-0099557_28	742740.HMPREF9474_03501	719.0	0	N/A	N/A
structural_annotation	UHGV-0099557_28	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-0099557_29	K06909	95.7	6.6e-28	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0099557_29	phrog_2	73.5	4.2e-21	terminase large subunit	head and packaging
UniRef90	UHGV-0099557_29	UniRef90_A0A417CQ07	930.0	0	Terminase	N/A
eggNOG-mapper	UHGV-0099557_29	742740.HMPREF9474_03500	753.0	0	Phage terminase, large subunit, PBSX family	N/A
COG	UHGV-0099557_29	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0099557_29	PF03237,PF17289,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
KOfam	UHGV-0099557_30	K07474	139.6	3.69999e-41	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-0099557_30	phrog_51	135.1	4.2e-40	terminase small subunit	head and packaging
UniRef90	UHGV-0099557_30	UniRef90_A0A417CPY2	313.0	0	Terminase small subunit	N/A
eggNOG-mapper	UHGV-0099557_30	742740.HMPREF9474_03499	217.0	0	Terminase Small Subunit	N/A
Pfam	UHGV-0099557_30	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-0099557_30	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-0099557_30	PF03592,COG3728	N/A	N/A	N/A	N/A
Pfam	UHGV-0099557_31	PF20385	N/A	N/A	N/A	DUF6680
PHROG	UHGV-0099557_32	phrog_36	67.6	2.3e-19	transcriptional regulator	transcription regulation
UniRef90	UHGV-0099557_32	UniRef90_R6ZAS5	138.0	5.03e-39	GED domain-containing protein	N/A
eggNOG-mapper	UHGV-0099557_32	476272.RUMHYD_02841	180.0	0	N/A	N/A
structural_annotation	UHGV-0099557_32	PF02996	N/A	N/A	N/A	N/A