UHGV-0102565 (vOTU-069302)

Viral Genome: UHGV-0102565

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0102565
vOTU ID	vOTU-069302
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_226963
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	98.36 (High-quality)
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9815
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	50.08
Jumbo phage	No

Genome content
Genome length (bp)	44,730
GC content	40.11%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	72
CDS density	92%
Average CDS length (bps)	572.79
Total tRNA genes	1
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 98.36)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0102565_1	phrog_22984	96.8	1.3e-28	N/A	unknown function
PHROG	UHGV-0102565_2	phrog_21718	133.2	1.2e-39	N/A	unknown function
eggNOG-mapper	UHGV-0102565_2	397290.C810_05210	122.0	2.53e-33	N/A	N/A
UniRef90	UHGV-0102565_4	UniRef90_A0A412ELA1	91.3	3.72e-23	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0102565_4	1410625.JHWK01000002_gene45	68.6	0.00000000000000865	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0102565_4	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0102565_4	COG2944	N/A	N/A	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	N/A
structural_annotation	UHGV-0102565_4	PF15731,NF007481,COG2944	N/A	N/A	N/A	N/A
UniRef90	UHGV-0102565_6	UniRef90_A0A843HPX3	51.2	0.000000459	Sigma-70 family RNA polymerase sigma factor	N/A
eggNOG-mapper	UHGV-0102565_6	1235790.C805_00057	58.2	0.000000000145	N/A	N/A
structural_annotation	UHGV-0102565_6	PF13404,TIGR01636	N/A	N/A	N/A	N/A
UniRef90	UHGV-0102565_7	UniRef90_A0A395X7A4	170.0	0	CTP synthase	N/A
eggNOG-mapper	UHGV-0102565_7	476272.RUMHYD_01766	124.0	9.2e-36	N/A	N/A
PHROG	UHGV-0102565_8	phrog_3754	115.3	4.3e-34	N/A	unknown function
eggNOG-mapper	UHGV-0102565_8	476272.RUMHYD_01764	176.0	0	N/A	N/A
PHROG	UHGV-0102565_9	phrog_581	234.4	0	minor head protein	head and packaging
UniRef90	UHGV-0102565_9	UniRef90_UPI001C0EDE82	605.0	0	phage minor capsid protein	N/A
eggNOG-mapper	UHGV-0102565_9	476272.RUMHYD_01761	166.0	2.8026e-45	Phage minor capsid protein 2	N/A
Pfam	UHGV-0102565_9	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0102565_9	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0102565_9	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-0102565_10	phrog_556	96.3	2.1e-28	minor head protein	head and packaging
UniRef90	UHGV-0102565_10	UniRef90_UPI001C0ECC47	259.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-0102565_10	1449343.JQLQ01000002_gene1329	57.4	0.0000000103	Minor capsid protein	N/A
Pfam	UHGV-0102565_10	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-0102565_10	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-0102565_11	phrog_533	288.4	0	portal protein	head and packaging
UniRef90	UHGV-0102565_11	UniRef90_A0A1C6CDM8	678.0	0	Phage portal protein, putative, A118 family	N/A
eggNOG-mapper	UHGV-0102565_11	33035.JPJF01000106_gene3135	505.0	0	phage minor capsid protein	N/A
structural_annotation	UHGV-0102565_11	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-0102565_12	K06909	419.8	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0102565_12	phrog_3717	161.5	0	terminase large subunit	head and packaging
UniRef90	UHGV-0102565_12	UniRef90_A0A412EKJ9	961.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0102565_12	33035.JPJF01000106_gene3136	663.0	0	Terminase small subunit	N/A
Pfam	UHGV-0102565_12	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
Pfam	UHGV-0102565_12	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-0102565_12	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-0102565_12	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0102565_12	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0102565_12	PF04466,PF17288,PF03592,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0102565_13	411459.RUMOBE_01385	50.1	0.00000148	N/A	N/A
AcrCatalog	UHGV-0102565_13	cluster_11670	78.2	6.1e-22	NA	N/A
eggNOG-mapper	UHGV-0102565_14	397290.C810_01492	70.1	0.000000000000268	N/A	N/A
PHROG	UHGV-0102565_18	phrog_8684	101.1	6.6e-30	N/A	unknown function
UniRef90	UHGV-0102565_18	UniRef90_A0A3A6GQT2	192.0	0	YopX domain-containing protein	N/A
eggNOG-mapper	UHGV-0102565_18	457412.RSAG_01162	90.1	6.36e-21	YopX protein	N/A
Pfam	UHGV-0102565_18	PF09643	N/A	N/A	YopX protein	YopX
NCBIFam	UHGV-0102565_18	TIGR01671.1	N/A	N/A	phage conserved hypothetical protein TIGR01671	N/A
structural_annotation	UHGV-0102565_18	PF09643,TIGR01671	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0102565_20	476272.RUMHYD_01751	48.1	0.00000901	N/A	N/A
AcrCatalog	UHGV-0102565_20	cluster_11670	42.7	0.0000000431	NA	N/A
UniRef90	UHGV-0102565_22	UniRef90_A0A317UCE7	104.0	1.37e-26	N/A	N/A
eggNOG-mapper	UHGV-0102565_23	457412.RSAG_01159	254.0	0	N/A	N/A
structural_annotation	UHGV-0102565_23	PF06319,NF033832,COG5321	N/A	N/A	N/A	N/A
PHROG	UHGV-0102565_24	phrog_419	111.0	1.3e-32	N/A	unknown function
UniRef90	UHGV-0102565_24	UniRef90_A0A060QMU0	102.0	1.3e-26	N/A	N/A
eggNOG-mapper	UHGV-0102565_24	1123312.KB904569_gene346	100.0	1.73e-26	N/A	N/A
PHROG	UHGV-0102565_25	phrog_4601	41.6	0.000000000018	N/A	unknown function
structural_annotation	UHGV-0102565_25	PF17888	N/A	N/A	N/A	N/A
UniRef90	UHGV-0102565_27	UniRef90_A0A373P4I4	63.9	0.0000000000145	Winged helix-turn-helix transcriptional regulator	N/A
Pfam	UHGV-0102565_27	PF12840	N/A	N/A	Helix-turn-helix domain	HTH_20
structural_annotation	UHGV-0102565_27	PF01726,COG0640	N/A	N/A	N/A	N/A
PHROG	UHGV-0102565_29	phrog_17690	136.5	8.39994e-41	N/A	unknown function
eggNOG-mapper	UHGV-0102565_29	476272.RUMHYD_03925	196.0	0	N/A	N/A
KOfam	UHGV-0102565_31	K15255	244.9	0	PIF1; ATP-dependent DNA helicase PIF1 [EC:5.6.2.3]	N/A
PHROG	UHGV-0102565_31	phrog_325	262.8	0	Dda-like helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0102565_31	UniRef90_A0A2V2D011	880.0	0	AAA domain-containing protein	N/A
eggNOG-mapper	UHGV-0102565_31	1504823.CCMM01000005_gene215	268.0	0	Caulimovirus viroplasmin	N/A
PADLOC	UHGV-0102565_31	cluster10	54.7	1.7e-18	RecD_0_IVD	CRISPR-CAS
Pfam	UHGV-0102565_31	PF05970	N/A	N/A	PIF1-like helicase	PIF1
COG	UHGV-0102565_31	COG0507	N/A	N/A	ATPase/5'-3' helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V)	N/A
structural_annotation	UHGV-0102565_31	PF05970,PF16277,MF_03176,TIGR01448,COG0507	N/A	N/A	N/A	N/A
PHROG	UHGV-0102565_32	phrog_8841	490.7	0	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0102565_32	UniRef90_A0A3A6GQS5	1140.0	0	N/A	N/A
eggNOG-mapper	UHGV-0102565_32	411460.RUMTOR_02070	528.0	0	N/A	N/A
Pfam	UHGV-0102565_32	PF06048	N/A	N/A	N/A	DUF927
Pfam	UHGV-0102565_32	PF18662	N/A	N/A	Cch helix turn helix domain	HTH_56
COG	UHGV-0102565_32	COG5519	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0102565_32	PF06048,PF18662,MF_00016,NF011296,COG5519	N/A	N/A	N/A	N/A
KOfam	UHGV-0102565_33	K02316	77.2	2.6e-22	dnaG; DNA primase [EC:2.7.7.101]	N/A
PHROG	UHGV-0102565_33	phrog_11992	129.2	3.8e-38	N/A	unknown function
UniRef90	UHGV-0102565_33	UniRef90_A0A3A6GSV7	318.0	0	DNA primase	N/A
eggNOG-mapper	UHGV-0102565_33	411460.RUMTOR_02069	126.0	1.05e-34	CHC2 zinc finger	N/A
PADLOC	UHGV-0102565_33	drt-UG29	45.2	0.00000000000082	DRT	DRT
Pfam	UHGV-0102565_33	PF01807	N/A	N/A	CHC2 zinc finger	zf-CHC2
COG	UHGV-0102565_33	COG0358	N/A	N/A	DNA primase (bacterial type)	N/A
structural_annotation	UHGV-0102565_33	PF01807,PF00401	N/A	N/A	N/A	N/A
PHROG	UHGV-0102565_34	phrog_3490	155.1	0	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0102565_34	UniRef90_R9KEE1	258.0	0	ERCC4 domain-containing protein	N/A
eggNOG-mapper	UHGV-0102565_34	1256908.HMPREF0373_00660	261.0	0	N/A	N/A
Pfam	UHGV-0102565_34	PF02732	N/A	N/A	ERCC4 domain	ERCC4
structural_annotation	UHGV-0102565_34	PF03834,NF040956,COG1948	N/A	N/A	N/A	N/A
PHROG	UHGV-0102565_35	phrog_18107	241.5	0	N/A	unknown function
eggNOG-mapper	UHGV-0102565_35	397290.C810_05167	214.0	0	N/A	N/A
structural_annotation	UHGV-0102565_35	PF05037	N/A	N/A	N/A	N/A
PHROG	UHGV-0102565_36	phrog_2872	171.9	0	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0102565_36	UniRef90_UPI0015715A02	281.0	0	AAA family ATPase	N/A
eggNOG-mapper	UHGV-0102565_36	1256908.HMPREF0373_00658	252.0	0	AAA domain	N/A
structural_annotation	UHGV-0102565_36	TIGR01618	N/A	N/A	N/A	N/A
UniRef90	UHGV-0102565_37	UniRef90_R6RDX0	76.6	4.32e-17	Arginyl-tRNA synthetase	N/A
structural_annotation	UHGV-0102565_38	NF011879	N/A	N/A	N/A	N/A
PHROG	UHGV-0102565_43	phrog_7964	145.0	0	N/A	unknown function
UniRef90	UHGV-0102565_43	UniRef90_A0A285PUH1	137.0	3.1e-37	Trimeric LpxA-like	N/A
eggNOG-mapper	UHGV-0102565_43	411470.RUMGNA_02189	114.0	2.36e-29	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell	N/A
Pfam	UHGV-0102565_43	PF18836	N/A	N/A	YdcK Beta solenoid repeat	B_solenoid_ydck
COG	UHGV-0102565_43	COG1044	N/A	N/A	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	N/A
UniRef90	UHGV-0102565_47	UniRef90_A0A2N5PI32	103.0	2.24e-27	N/A	N/A
eggNOG-mapper	UHGV-0102565_47	411470.RUMGNA_03231	103.0	3.75e-28	N/A	N/A
Pfam	UHGV-0102565_47	PF05339	N/A	N/A	N/A	DUF739
COG	UHGV-0102565_47	COG3655	N/A	N/A	DNA-binding transcriptional regulator, XRE family	N/A
structural_annotation	UHGV-0102565_47	PF05339,MF_00535,NF002773,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-0102565_48	phrog_2967	49.2	0.00000000000011	transcriptional regulator	transcription regulation
UniRef90	UHGV-0102565_48	UniRef90_UPI001D029144	163.0	0	transcriptional regulator	N/A
eggNOG-mapper	UHGV-0102565_48	457412.RSAG_00795	121.0	2.2e-33	sequence-specific DNA binding	N/A
COG	UHGV-0102565_48	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0102565_48	PF01381,NF007257,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-0102565_51	phrog_215	51.2	0.000000000000018	structural protein with Ig domain	head and packaging
eggNOG-mapper	UHGV-0102565_51	180332.JTGN01000005_gene2952	105.0	3.1e-21	domain, Protein	N/A
Pfam	UHGV-0102565_51	PF02368	N/A	N/A	Bacterial Ig-like domain (group 2)	Big_2
COG	UHGV-0102565_51	COG2382	N/A	N/A	Enterochelin esterase or related enzyme	N/A
KOfam	UHGV-0102565_52	K06400	296.1	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0102565_52	phrog_95	332.3	0	integrase	integration and excision
UniRef90	UHGV-0102565_52	UniRef90_A0A2V2D7K6	998.0	0	Recombinase family protein	N/A
eggNOG-mapper	UHGV-0102565_52	33035.JPJF01000109_gene439	678.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-0102565_52	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0102565_52	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-0102565_52	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-0102565_52	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0102565_52	PF07508,PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A
PHROG	UHGV-0102565_53	phrog_38078	53.6	1.3e-16	N/A	unknown function
UniRef90	UHGV-0102565_53	UniRef90_UPI0009315CF1	489.0	0	SH3 domain-containing protein	N/A
eggNOG-mapper	UHGV-0102565_53	476272.RUMHYD_01851	219.0	0	Putative peptidoglycan binding domain	N/A
Pfam	UHGV-0102565_53	PF05257	N/A	N/A	CHAP domain	CHAP
Pfam	UHGV-0102565_53	PF08239	N/A	N/A	Bacterial SH3 domain	SH3_3
COG	UHGV-0102565_53	COG3409	N/A	N/A	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	N/A
structural_annotation	UHGV-0102565_53	PF08239,PF09953,NF040678,COG3942,COG4991	N/A	N/A	N/A	N/A
PHROG	UHGV-0102565_55	phrog_6616	475.9	0	tail protein	tail
UniRef90	UHGV-0102565_55	UniRef90_A0A2V2D052	2575.0	0	Peptidase S74 domain-containing protein	N/A
eggNOG-mapper	UHGV-0102565_55	1121866.AUGK01000003_gene1439	262.0	0	Phage minor structural protein	N/A
COG	UHGV-0102565_55	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0102565_55	PF05113,PF03921,PF13884,NF033848,COG3500	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0102565_56	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0102565_57	phrog_1535	343.3	0	tail length tape measure protein	tail
UniRef90	UHGV-0102565_57	UniRef90_A0A1C5P271	484.0	0	Chromosome segregation protein	N/A
eggNOG-mapper	UHGV-0102565_57	411459.RUMOBE_01384	540.0	0	phage tail tape measure protein	N/A
COG	UHGV-0102565_57	COG5412	N/A	N/A	Phage-related protein	N/A
PHROG	UHGV-0102565_58	phrog_706	107.3	1.4e-31	N/A	unknown function
UniRef90	UHGV-0102565_58	UniRef90_UPI001C0F2CC6	284.0	0	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-0102565_58	411459.RUMOBE_01383	207.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0102565_58	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0102565_58	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0102565_59	phrog_11299	81.8	9.2e-24	N/A	unknown function
eggNOG-mapper	UHGV-0102565_59	411459.RUMOBE_01382	73.6	0.0000000000000092	N/A	N/A
structural_annotation	UHGV-0102565_59	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-0102565_60	phrog_3099	117.8	9.3e-35	N/A	unknown function
eggNOG-mapper	UHGV-0102565_60	33035.JPJF01000106_gene3126	191.0	0	N/A	N/A
structural_annotation	UHGV-0102565_60	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0102565_61	phrog_3266	87.3	1.5e-25	tail completion	connector
eggNOG-mapper	UHGV-0102565_61	476272.RUMHYD_01781	150.0	3.08286e-44	N/A	N/A
structural_annotation	UHGV-0102565_61	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-0102565_63	phrog_3366	92.0	6.6e-27	N/A	unknown function
eggNOG-mapper	UHGV-0102565_63	476272.RUMHYD_01779	153.0	1.4013e-45	N/A	N/A
structural_annotation	UHGV-0102565_63	PF20536,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0102565_64	phrog_1129	77.1	1.6e-22	holin	lysis
UniRef90	UHGV-0102565_64	UniRef90_A0A395X7B2	171.0	0	Enolase	N/A
eggNOG-mapper	UHGV-0102565_64	411461.DORFOR_00721	114.0	2.51e-32	N/A	N/A
Pfam	UHGV-0102565_64	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0102565_64	PF06946	N/A	N/A	N/A	N/A
PHROG	UHGV-0102565_65	phrog_774	67.3	2.8e-19	N/A	unknown function
eggNOG-mapper	UHGV-0102565_65	397290.C810_05225	141.0	6.75426e-43	N/A	N/A
eggNOG-mapper	UHGV-0102565_66	1444310.JANV01000162_gene1177	50.8	0.000000581	N/A	N/A
PHROG	UHGV-0102565_67	phrog_28328	83.8	3.5e-25	N/A	unknown function
eggNOG-mapper	UHGV-0102565_67	428125.CLOLEP_01381	55.5	0.00000000592	N/A	N/A
PHROG	UHGV-0102565_68	phrog_541	99.8	1.4e-29	head-tail adaptor	connector
eggNOG-mapper	UHGV-0102565_68	476272.RUMHYD_01778	117.0	4.02e-31	N/A	N/A
PHROG	UHGV-0102565_69	phrog_544	160.6	0	major head protein	head and packaging
UniRef90	UHGV-0102565_69	UniRef90_A0A395X7A1	674.0	0	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0102565_69	1232453.BAIF02000011_gene3359	393.0	0	N/A	N/A
Pfam	UHGV-0102565_69	PF18316	N/A	N/A	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
structural_annotation	UHGV-0102565_69	PF03864,PF18316,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0102565_70	phrog_194	65.0	1.5e-18	head scaffolding protein	head and packaging
UniRef90	UHGV-0102565_70	UniRef90_UPI001D14C9C8	194.0	0	phage scaffolding protein	N/A
eggNOG-mapper	UHGV-0102565_70	476272.RUMHYD_01775	194.0	0	COG NOG36366 non supervised orthologous group	N/A
Pfam	UHGV-0102565_70	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
PHROG	UHGV-0102565_71	phrog_28802	190.7	0	N/A	unknown function
eggNOG-mapper	UHGV-0102565_71	476272.RUMHYD_01772	158.0	0	N/A	N/A
PHROG	UHGV-0102565_72	phrog_20016	196.7	0	N/A	unknown function
UniRef90	UHGV-0102565_72	UniRef90_A0A285PT46	160.0	0	Tumour necrosis factor-like domain	N/A
eggNOG-mapper	UHGV-0102565_72	397290.C810_05214	179.0	0	N/A	N/A
structural_annotation	UHGV-0102565_72	PF18573,NF033147	N/A	N/A	N/A	N/A